Ticket #33410: Portfile-samtools.diff

Portfile

@@ -4 +4 @@
 PortSystem              1.0
 
 name                    samtools
-version                 0.1.17
+version                 0.1.18
 categories              science
 platforms               darwin
 maintainers             gmail.com:haroldpimentel openmaintainer
@@ -20 +20 @@
 homepage                http://samtools.sourceforge.net/
 master_sites            sourceforge
 
-checksums               sha1    4d2ef4273d9f71cd1f504f43c596970845d78718 \
-                        rmd160  0921e733358ccf01d316dff2b797957f4f2cfb7b
+checksums               sha1    77be35df7a90c288a003ff826ba99aef53b2fbe6 \
+                        rmd160  0301de58e31c7529a2535086be0cc7d93778ede8
+
+patchfiles              patch-Makefile.diff
 
 use_bzip2               yes
 
@@ -29 +31 @@
 
 use_configure           no
 
+set archflags           [get_canonical_archflags cc]
+set sdkroot             [portconfigure::configure_get_sdkroot]
+set sdkroot_flags       ""
+
+if {${sdkroot} != ""} {
+    set sdkroot_flags "-isysroot ${sdkroot}"
+}
+
+build.env-append        CC=${configure.cc} \
+                        CFLAGS="${configure.cflags} ${archflags} ${sdkroot_flags}"
+
 destroot {
     xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin
     xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib