| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | |
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| 6 | name samscope |
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| 7 | version 1.6.6.91 |
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| 8 | categories science |
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| 9 | platforms darwin |
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| 10 | license AGPL |
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| 11 | maintainers krisp@dna.bio.keio.ac.jp |
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| 12 | description OpenGL based SAM/BAM file viewer |
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| 13 | long_description Samscope is a lightweight SAM/BAM file viewer that makes visually\ |
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| 14 | exploring next generation sequencing data intuitive and maybe even\ |
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| 15 | fun!\ |
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| 16 | \ |
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| 17 | Samscope uses multiple layers to simultaneously (or sequentially)\ |
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| 18 | view SAM/BAM related features like coverage or allele frequency, or\ |
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| 19 | ChIP-SEQ features like polarity. The paging-friendly binary file\ |
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| 20 | layout makes it feasible to browse data sets far larger than the\ |
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| 21 | system's available RAM. |
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| 22 | homepage http://samscope.dna.bio.keio.ac.jp |
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| 23 | master_sites ${homepage}/archive/source/ \ |
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| 24 | sourceforge:samscope/source/ |
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| 25 | use_bzip2 yes |
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| 26 | distfiles ${name}-${version}${extract.suffix} |
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| 27 | |
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| 28 | #for now we need a patch: |
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| 29 | patch_sites.mirror_subdir patches/macports/ |
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| 30 | patchfiles ${name}-${version}.patch |
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| 31 | patch.pre_args -p1 |
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| 32 | |
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| 33 | |
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| 34 | #needs to be updated for each new version |
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| 35 | checksums samscope-1.6.6.91.patch \ |
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| 36 | rmd160 aad1f65eb15a9c53094e04d8976fd5b453f9044b \ |
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| 37 | sha256 2cf4b0f5bf1f230b1ce31d6dbee74768330b8982182db5ab20648007b65e4a71 \ |
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| 38 | samscope-1.6.6.91.tar.bz2 \ |
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| 39 | rmd160 97b1e6ed053ba0b8dc23dc89b73f919ab0cac1a1 \ |
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| 40 | sha256 3962dddc38bb04b14cd16a4e60c9904c11e38aef89ab83495ba4a871e5063ed6 |
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| 41 | |
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| 42 | #dependencies |
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| 43 | |
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| 44 | depends_lib port:boost port:bzip2 port:freeglut port:libdevil port:xorg-libXmu port:xorg-libX11 |
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| 45 | depends_build port:cmake port:scons |
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| 46 | depends_run port:samtools |
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| 47 | |
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| 48 | ####stuff for actually building and compiling |
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| 49 | |
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| 50 | use_configure no |
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| 51 | build.cmd scons |
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| 52 | destroot.args PREFIX=${prefix} |
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| 53 | |
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