~ vm$ sudo port upgrade py27-numpy ---> Computing dependencies for py27-numpy ---> Fetching archive for py27-numpy ---> Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/py27-numpy ---> Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/py27-numpy ---> Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-numpy ---> Fetching distfiles for py27-numpy ---> Attempting to fetch numpy-1.9.1.tar.gz from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/py-numpy ---> Attempting to fetch numpy-1.9.1.tar.gz from http://nue.de.distfiles.macports.org/macports/distfiles/py-numpy ---> Attempting to fetch numpy-1.9.1.tar.gz from http://lil.fr.distfiles.macports.org/py-numpy ---> Attempting to fetch numpy-1.9.1.tar.gz from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/py-numpy ---> Attempting to fetch numpy-1.9.1.tar.gz from http://her.gr.distfiles.macports.org/mirrors/macports/mpdistfiles/py-numpy ---> Attempting to fetch numpy-1.9.1.tar.gz from https://github.com/numpy/numpy/tarball/v1.9.1 ---> Verifying checksums for py27-numpy ---> Extracting py27-numpy ---> Applying patches to py27-numpy ---> Configuring py27-numpy ---> Building py27-numpy Error: org.macports.build for port py27-numpy returned: command execution failed Please see the log file for port py27-numpy for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log Error: Unable to upgrade port: 1 To report a bug, follow the instructions in the guide: http://guide.macports.org/#project.tickets ~ vm$ ~ vm$ ~ vm$ /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log -bash: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log: Permission denied ~ vm$ cat /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log version:1 :msg:main ---> Computing dependencies for py27-numpy:info:main .:debug:main py27-numpy has no conflicts :debug:main Searching for dependency: python27 :debug:main Found Dependency: receipt exists for python27 :debug:main Searching for dependency: fftw-3 :debug:main Found Dependency: receipt exists for fftw-3 :debug:main Searching for dependency: py27-nose :debug:main Found Dependency: receipt exists for py27-nose :debug:main Searching for dependency: py27-cython :debug:main Found Dependency: receipt exists for py27-cython :msg:main :debug:main Executing org.macports.main (py27-numpy) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 20 :debug:main euid changed to: 502 :debug:archivefetch archivefetch phase started at Sun Nov 2 23:22:15 CET 2014 :msg:archivefetch ---> Fetching archive for py27-numpy :debug:archivefetch Executing org.macports.archivefetch (py27-numpy) :debug:archivefetch euid/egid changed to: 0/0 :debug:archivefetch chowned /opt/local/var/macports/incoming to macports :debug:archivefetch euid/egid changed to: 502/20 :info:archivefetch ---> py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified :msg:archivefetch ---> Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/py27-numpy :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found :msg:archivefetch ---> Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/py27-numpy :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found :msg:archivefetch ---> Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-numpy :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found :debug:archivefetch Privilege de-escalation not attempted as not running as root. :debug:fetch fetch phase started at Sun Nov 2 23:22:17 CET 2014 :notice:fetch ---> Fetching distfiles for py27-numpy :debug:fetch Executing org.macports.fetch (py27-numpy) :info:fetch ---> numpy-1.9.1.tar.gz doesn't seem to exist in /opt/local/var/macports/distfiles/py-numpy :notice:fetch ---> Attempting to fetch numpy-1.9.1.tar.gz from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/py-numpy :debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found :notice:fetch ---> Attempting to fetch numpy-1.9.1.tar.gz from http://nue.de.distfiles.macports.org/macports/distfiles/py-numpy :debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found :notice:fetch ---> Attempting to fetch numpy-1.9.1.tar.gz from http://lil.fr.distfiles.macports.org/py-numpy :debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found :notice:fetch ---> Attempting to fetch numpy-1.9.1.tar.gz from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/py-numpy :debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found :notice:fetch ---> Attempting to fetch numpy-1.9.1.tar.gz from http://her.gr.distfiles.macports.org/mirrors/macports/mpdistfiles/py-numpy :debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found :notice:fetch ---> Attempting to fetch numpy-1.9.1.tar.gz from https://github.com/numpy/numpy/tarball/v1.9.1 :debug:fetch Privilege de-escalation not attempted as not running as root. :debug:checksum checksum phase started at Sun Nov 2 23:22:23 CET 2014 :notice:checksum ---> Verifying checksums for py27-numpy :debug:checksum Executing org.macports.checksum (py27-numpy) :info:checksum ---> Checksumming numpy-1.9.1.tar.gz :debug:checksum Calculated (rmd160) is c043ce0045166762e36c513458abc499d36bbcf5 :debug:checksum Correct (rmd160) checksum for numpy-1.9.1.tar.gz :debug:checksum Calculated (sha256) is 504b7cbc3b47df592d683e0f3b992cfa4d29338f8d23fca07f040164018b607f :debug:checksum Correct (sha256) checksum for numpy-1.9.1.tar.gz :debug:checksum Privilege de-escalation not attempted as not running as root. :debug:extract extract phase started at Sun Nov 2 23:22:24 CET 2014 :notice:extract ---> Extracting py27-numpy :debug:extract Executing org.macports.extract (py27-numpy) :info:extract ---> Extracting numpy-1.9.1.tar.gz :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/py-numpy/numpy-1.9.1.tar.gz' :debug:extract Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' :debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/py-numpy/numpy-1.9.1.tar.gz' | /usr/bin/tar -xf -' :debug:extract Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/py-numpy/numpy-1.9.1.tar.gz' | /usr/bin/tar -xf - :debug:extract euid/egid changed to: 0/0 :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work to macports :debug:extract euid/egid changed to: 502/20 :debug:extract Executing proc-post-org.macports.extract-extract-0 :debug:extract Privilege de-escalation not attempted as not running as root. :debug:patch patch phase started at Sun Nov 2 23:22:24 CET 2014 :debug:patch Executing org.macports.patch (py27-numpy) :notice:patch ---> Applying patches to py27-numpy :info:patch ---> Applying patch-f2py_setup.py.diff :debug:patch Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0' :debug:patch Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy/files/patch-f2py_setup.py.diff' :info:patch patching file numpy/f2py/setup.py :info:patch ---> Applying patch-fcompiler_g95.diff :debug:patch Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0' :debug:patch Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy/files/patch-fcompiler_g95.diff' :info:patch patching file numpy/distutils/fcompiler/__init__.py :info:patch ---> Applying patch-numpy_core_setup.py.diff :debug:patch Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' :debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0' :debug:patch Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy/files/patch-numpy_core_setup.py.diff' :info:patch patching file numpy/core/setup.py :debug:patch Executing proc-post-org.macports.patch-patch-0 :info:patch ---> Patching setup.py: s|@@MPORTS_PYTHON@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7| :debug:patch Executing reinplace: /usr/bin/sed s|@@MPORTS_PYTHON@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7| < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/numpy/f2py/setup.py >@ file11 2>@stderr :debug:patch euid/egid changed to: 0/0 :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/numpy/f2py/setup.py to macports :debug:patch euid/egid changed to: 502/20 :debug:patch euid/egid changed to: 0/0 :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/numpy/f2py/setup.py :debug:patch euid/egid changed to: 502/20 :debug:patch Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Sun Nov 2 23:22:24 CET 2014 :notice:configure ---> Configuring py27-numpy :debug:configure Using compiler 'Xcode Clang' :debug:configure Executing org.macports.configure (py27-numpy) :debug:configure Privilege de-escalation not attempted as not running as root. :debug:build build phase started at Sun Nov 2 23:22:24 CET 2014 :notice:build ---> Building py27-numpy :debug:build Executing proc-pre-org.macports.build-build-0 :debug:build Executing org.macports.build (py27-numpy) :debug:build Environment: ARCHFLAGS='-arch x86_64' ATLAS='None' BLAS='/usr/lib' CC='/usr/bin/clang' CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS' CFLAGS='-arch x86_64' CPATH='/opt/local/include' CXX='/usr/bin/clang++' CXXFLAGS='-arch x86_64' F90FLAGS='-m64' FCFLAGS='-m64' FFLAGS='-m64' LAPACK='/usr/lib' LDFLAGS='-arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' OBJC='/usr/bin/clang' OBJCFLAGS='-arch x86_64' :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build' :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build :info:build Running from numpy source directory. :info:build Traceback (most recent call last): :info:build File "/opt/local/bin/cython", line 9, in :info:build load_entry_point('Cython==0.21.1', 'console_scripts', 'cython')() :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 637, in setuptools_main :info:build return main(command_line = 1) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 654, in main :info:build result = compile(sources, options) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 629, in compile :info:build return compile_multiple(source, options) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 602, in compile_multiple :info:build context = options.create_context() :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 527, in create_context :info:build self.cplus, self.language_level, options=self) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 69, in __init__ :info:build from . import Builtin, CythonScope :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/CythonScope.py", line 5, in :info:build from .UtilityCode import CythonUtilityCode :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/UtilityCode.py", line 3, in :info:build from .TreeFragment import parse_from_strings, StringParseContext :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/TreeFragment.py", line 20, in :info:build from . import Parsing :info:build File "Cython/Compiler/Parsing.py", line 26, in init Cython.Compiler.Parsing (Cython/Compiler/Parsing.c:55936) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/ModuleNode.py", line 2922, in :info:build capsule_utility_code = UtilityCode.load("Capsule") :info:build File "Cython/Compiler/Code.py", line 240, in Cython.Compiler.Code.UtilityCodeBase.load (Cython/Compiler/Code.c:7277) :info:build self.write("\n") :info:build ValueError: More than one filename match found for utility code Capsule :info:build Processing numpy/random/mtrand/mtrand.pyx :info:build Traceback (most recent call last): :info:build File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 199, in :info:build main() :info:build File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 195, in main :info:build find_process_files(root_dir) :info:build File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 187, in find_process_files :info:build process(cur_dir, fromfile, tofile, function, hash_db) :info:build File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 161, in process :info:build processor_function(fromfile, tofile) :info:build File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 72, in process_pyx :info:build raise Exception('Cython failed') :info:build Exception: Cython failed :info:build Cythonizing sources :info:build Traceback (most recent call last): :info:build File "setup.py", line 251, in :info:build setup_package() :info:build File "setup.py", line 239, in setup_package :info:build generate_cython() :info:build File "setup.py", line 191, in generate_cython :info:build raise RuntimeError("Running cythonize failed!") :info:build RuntimeError: Running cythonize failed! :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build :info:build Exit code: 1 :error:build org.macports.build for port py27-numpy returned: command execution failed :debug:build Error code: CHILDSTATUS 88402 1 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "portbuild::build_main org.macports.build" ("eval" body line 1) invoked from within "eval $procedure $targetname" :info:build Warning: targets not executed for py27-numpy: org.macports.install org.macports.build org.macports.destroot :notice:build Please see the log file for port py27-numpy for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log