py25-shogun install fails

[zac@…]

Building of py25-shogun works perfectly on a fresh install of MacPorts 1.7.1, however the install phase fails.

I have attached a build log. As a side note, doing:

"touch /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py25-shogun/work/destroot/opt/local/src/configure"

results in the installation completing successfully.

Importing the module in python works and shows the proper diagnostic information for Shogun, however trying to use the module fails. I have also included an example of failed dialog.

[zac@…]

shogun install

[zac@…]

python module failure

[krunk7@…]

Looks like your calling the sg module incorrectly (or directly as the case may be).

The correct method to set log level is:

>>> from sg import sg
shogun (sg.so/i386/v0.6.7_r3445_2008-11-14_09:47_3445)

Copyright (C) 1999-2008 Fraunhofer Institute FIRST and Max-Planck-Society
Written   (W) 2000-2008 Soeren Sonnenburg, Gunnar Raetsch et al.

This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

( configure options: "configure options --prefix=/opt/local --disable-svm-light --interface=python --python=/opt/local/bin/python2.5 --libs=/opt/local/lib --includes=/opt/local/include --cxx=/opt/local/bin/g++-mp-4.3 --cc=/opt/local/bin/gcc-mp-4.3 --install-path=/opt/local --enable-readline --destdir=/opt/local/var/macports/build/_Users_jkyle_Projects_macports_ports_python_py25-shogun/work/destroot" compile flags: "-fno-strict-aliasing -fPIC  -O2 -g -Wall -Wno-unused-parameter -Wformat -Wformat-security -Wimplicit -Wparentheses -Wshadow -O9 -fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -march=i486 -mtune=i686 -pthread" link flags: " -lpython2.5 -ldl -bundle -Wl,-flat_namespace -L/opt/local/lib    -undefined error -lm -pthread -latlas -llapack -lcblas -llapack -lcblas -lglpk -lm -L/opt/local/lib/ -llpsolve55" )
( seeding random number generator with 1572162048 (seed size 256))
determined range for x in log(1+exp(-x)) is:37 )
 
>>> sg('loglevel', 'ALL')
[INFO] Loglevel set to ALL.
>>> 

Please let me know if this does not work for you.

[zac@…]

Replying to krunk7@…:

Looks like your calling the sg module incorrectly (or directly as the case may be).

The correct method to set log level is:

>>> from sg import sg
shogun (sg.so/i386/v0.6.7_r3445_2008-11-14_09:47_3445)

Copyright (C) 1999-2008 Fraunhofer Institute FIRST and Max-Planck-Society
Written   (W) 2000-2008 Soeren Sonnenburg, Gunnar Raetsch et al.

This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

( configure options: "configure options --prefix=/opt/local --disable-svm-light --interface=python --python=/opt/local/bin/python2.5 --libs=/opt/local/lib --includes=/opt/local/include --cxx=/opt/local/bin/g++-mp-4.3 --cc=/opt/local/bin/gcc-mp-4.3 --install-path=/opt/local --enable-readline --destdir=/opt/local/var/macports/build/_Users_jkyle_Projects_macports_ports_python_py25-shogun/work/destroot" compile flags: "-fno-strict-aliasing -fPIC  -O2 -g -Wall -Wno-unused-parameter -Wformat -Wformat-security -Wimplicit -Wparentheses -Wshadow -O9 -fexpensive-optimizations -frerun-cse-after-loop -fcse-follow-jumps -finline-functions -fschedule-insns2 -fthread-jumps -fforce-addr -fstrength-reduce -march=i486 -mtune=i686 -pthread" link flags: " -lpython2.5 -ldl -bundle -Wl,-flat_namespace -L/opt/local/lib    -undefined error -lm -pthread -latlas -llapack -lcblas -llapack -lcblas -lglpk -lm -L/opt/local/lib/ -llpsolve55" )
( seeding random number generator with 1572162048 (seed size 256))
determined range for x in log(1+exp(-x)) is:37 )
 
>>> sg('loglevel', 'ALL')
[INFO] Loglevel set to ALL.
>>> 

Please let me know if this does not work for you.

That does in fact work, however it doesn't change the fact that the install doesn't work properly.

[krunk7@…]

Looks like the previous patch that was applied put the reinplace at the wrong port stage. I've uploaded a patch that corrects this.

[krunk7@…]

Portfile Patch

[raimue (Rainer Müller)]

Committed in r49429.

[raimue (Rainer Müller)]

Oh, just to avoid confusion, krunk == jameskyle.

[(none)]

Milestone Port Bugs deleted