nco-3.9.8 Conflicting types - build error

[uthyr@…]

I've tried building nco with netcdf configured for each fortran variant (netcdf +g95, netcdf +gfortran). in both cases, I get these identical conflicting type definitions.

Errors are:

Making all in nco /bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile /usr/bin/gcc-4.0 -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/opt/local/include -I/usr/include/malloc -I/opt/local/include -fno-common -O2 -std=c99 -D_BSD_SOURCE -c -o nco_att_utl.lo nco_att_utl.c libtool: compile: /usr/bin/gcc-4.0 -std=gnu99 -DHAVE_CONFIG_H -I. -I../.. -I/opt/local/include -I/usr/include/malloc -I/opt/local/include -fno-common -O2 -std=c99 -D_BSD_SOURCE -c nco_att_utl.c -o nco_att_utl.o In file included from nco_netcdf.h:27,

from nco_att_utl.h:26, from nco_att_utl.c:9:

nco_typ.h:76:1: warning: "NC_FILL_INT64" redefined In file included from nco_att_utl.h:25,

from nco_att_utl.c:9:

/opt/local/include/netcdf.h:92:1: warning: this is the location of the previous definition In file included from nco_netcdf.h:27,

from nco_att_utl.h:26, from nco_att_utl.c:9:

nco_typ.h:77:1: warning: "NC_FILL_UINT64" redefined In file included from nco_att_utl.h:25,

from nco_att_utl.c:9:

/opt/local/include/netcdf.h:93:1: warning: this is the location of the previous definition In file included from nco_att_utl.h:26,

from nco_att_utl.c:9:

nco_netcdf.h:165: error: conflicting types for 'nc_def_var_chunking' /opt/local/include/netcdf.h:688: error: previous declaration of 'nc_def_var_chunking' was here nco_netcdf.h:171: error: conflicting types for 'nc_get_var1_ushort' /opt/local/include/netcdf.h:1032: error: previous declaration of 'nc_get_var1_ushort' was here nco_netcdf.h:183: error: conflicting types for 'nc_put_var1_string' /opt/local/include/netcdf.h:1060: error: previous declaration of 'nc_put_var1_string' was here nco_netcdf.h:187: error: conflicting types for 'nc_get_vara_ushort' /opt/local/include/netcdf.h:1147: error: previous declaration of 'nc_get_vara_ushort' was here nco_netcdf.h:199: error: conflicting types for 'nc_put_vara_string' /opt/local/include/netcdf.h:1175: error: previous declaration of 'nc_put_vara_string' was here nco_netcdf.h:203: error: conflicting types for 'nc_get_vars_ushort' /opt/local/include/netcdf.h:1282: error: previous declaration of 'nc_get_vars_ushort' was here nco_netcdf.h:215: error: conflicting types for 'nc_put_vars_string' /opt/local/include/netcdf.h:1317: error: previous declaration of 'nc_put_vars_string' was here nco_netcdf.h:219: error: conflicting types for 'nc_get_varm_ushort' /opt/local/include/netcdf.h:1425: error: previous declaration of 'nc_get_varm_ushort' was here nco_netcdf.h:231: error: conflicting types for 'nc_put_varm_string' /opt/local/include/netcdf.h:1460: error: previous declaration of 'nc_put_varm_string' was here nco_netcdf.h:240: error: conflicting types for 'nc_put_att_string' /opt/local/include/netcdf.h:916: error: previous declaration of 'nc_put_att_string' was here nco_netcdf.h:245: error: conflicting types for 'nc_get_att_ushort' /opt/local/include/netcdf.h:890: error: previous declaration of 'nc_get_att_ushort' was here In file included from nco_att_utl.h:29,

from nco_att_utl.c:9:

nco.h:183:1: warning: "NC_NETCDF4" redefined In file included from nco_att_utl.h:25,

from nco_att_utl.c:9:

/opt/local/include/netcdf.h:151:1: warning: this is the location of the previous definition make[3]: * [nco_att_utl.lo] Error 1 make[2]: * [all-recursive] Error 1 make[1]: * [all-recursive] Error 1 make: * [all] Error 2 Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_nco/work/nco-3.9.8" && make all " returned error 2 Command output: nco_netcdf.h:171: error: conflicting types for 'nc_get_var1_ushort' /opt/local/include/netcdf.h:1032: error: previous declaration of 'nc_get_var1_ushort' was here nco_netcdf.h:183: error: conflicting types for 'nc_put_var1_string' /opt/local/include/netcdf.h:1060: error: previous declaration of 'nc_put_var1_string' was here nco_netcdf.h:187: error: conflicting types for 'nc_get_vara_ushort' /opt/local/include/netcdf.h:1147: error: previous declaration of 'nc_get_vara_ushort' was here nco_netcdf.h:199: error: conflicting types for 'nc_put_vara_string' /opt/local/include/netcdf.h:1175: error: previous declaration of 'nc_put_vara_string' was here nco_netcdf.h:203: error: conflicting types for 'nc_get_vars_ushort' /opt/local/include/netcdf.h:1282: error: previous declaration of 'nc_get_vars_ushort' was here nco_netcdf.h:215: error: conflicting types for 'nc_put_vars_string' /opt/local/include/netcdf.h:1317: error: previous declaration of 'nc_put_vars_string' was here nco_netcdf.h:219: error: conflicting types for 'nc_get_varm_ushort' /opt/local/include/netcdf.h:1425: error: previous declaration of 'nc_get_varm_ushort' was here nco_netcdf.h:231: error: conflicting types for 'nc_put_varm_string' /opt/local/include/netcdf.h:1460: error: previous declaration of 'nc_put_varm_string' was here nco_netcdf.h:240: error: conflicting types for 'nc_put_att_string' /opt/local/include/netcdf.h:916: error: previous declaration of 'nc_put_att_string' was here nco_netcdf.h:245: error: conflicting types for 'nc_get_att_ushort' /opt/local/include/netcdf.h:890: error: previous declaration of 'nc_get_att_ushort' was here In file included from nco_att_utl.h:29,

from nco_att_utl.c:9:

nco.h:183:1: warning: "NC_NETCDF4" redefined In file included from nco_att_utl.h:25,

from nco_att_utl.c:9:

/opt/local/include/netcdf.h:151:1: warning: this is the location of the previous definition make[3]: * [nco_att_utl.lo] Error 1 make[2]: * [all-recursive] Error 1 make[1]: * [all-recursive] Error 1 make: * [all] Error 2

Warning: the following items did not execute (for nco): org.macports.activate org.macports.build org.macports.destroot org.macports.install Error: Status 1 encountered during processing. salome stow>