Opened 14 years ago

Last modified 13 years ago

#25510 closed defect

Python Crash — at Version 1

Reported by: raramayo (Rodolfo Aramayo) Owned by: macports-tickets@…
Priority: Normal Milestone:
Component: ports Version: 1.9.1
Keywords: Cc:
Port: py26-biopython

Description (last modified by blb@…)

If I type:

==========

>python

Python 2.6.5 (r265:79063, Jun 16 2010, 11:08:17) 
[GCC 4.0.1 (Apple Inc. build 5493)] on darwin
Type "help", "copyright", "credits" or "license" for more information.

>>>>help()

Welcome to Python 2.6!  This is the online help utility.

If this is your first time using Python, you should definitely check out
the tutorial on the Internet at http://docs.python.org/tutorial/.

Enter the name of any module, keyword, or topic to get help on writing
Python programs and using Python modules.  To quit this help utility and
return to the interpreter, just type "quit".

To get a list of available modules, keywords, or topics, type "modules",
"keywords", or "topics".  Each module also comes with a one-line summary
of what it does; to list the modules whose summaries contain a given word
such as "spam", type "modules spam".

>>>>modules

Please wait a moment while I gather a list of all available modules...

/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/Bio/AlignAce/__init__.py:26: DeprecationWarning: Bio.AlignAce is deprecated. Please use Bio.Motif instead.
  DeprecationWarning)
/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/Bio/Enzyme/__init__.py:23: DeprecationWarning: Bio.Enzyme is deprecated, and will be removed in a future release of Biopython. Most of the functionality  is now provided by Bio.ExPASy.Enzyme.  If you want to  continue to use Bio.Enzyme, please get in contact  via the mailing lists to avoid its permanent removal from Biopython.
  " Biopython.", DeprecationWarning)
...
...
...
...
/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/Bio/Prosite/__init__.py:65: DeprecationWarning: Bio.Prosite is deprecated, and will be removed in a future release of Biopython. Most of the functionality  is now provided by Bio.ExPASy.Prosite.  If you want to  continue to use Bio.Prosite, please get in contact  via the mailing lists to avoid its permanent removal from Biopython.
  " Biopython.", DeprecationWarning)
Bus error

>

==========

ANd at this point python crashes

Change History (2)

comment:1 Changed 14 years ago by blb@…

Description: modified (diff)

What ports do you have installed (use port installed to see)? Could be an issue with some module; also, are you on 10.4 or 10.5?

Changed 14 years ago by raramayo (Rodolfo Aramayo)

Attachment: portinstalled.txt added
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