geant4 @4.9.3 runtime library problems

[karl.hauschild@…]

Hi,

I get the following runtime error for geant4.9.3 :

dyld: Library not loaded: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
  Referenced from: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
  Reason: Incompatible library version: vecLib requires version 1.0.0 or later, but libLAPACK.dylib provides version 0.0.0
Trace/BPT trap

This appears to be the same problem reported in ​https://trac.macports.org/ticket/20487

Similarly :

[hauschild] : otool -L /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib:
	/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib (compatibility version 1.0.0, current version 268.0.1)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 125.0.1)
	/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib (compatibility version 1.0.0, current version 268.0.1)
	/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib (compatibility version 1.0.0, current version 268.0.1)
	/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib (compatibility version 1.0.0, current version 219.0.0)
	/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib (compatibility version 1.0.0, current version 219.0.0)

Other ports with the same (fixed) problem used cmake : eg ​https://trac.macports.org/ticket/17577.

But I can not see where I would apply this to the geant4 Portfile

Many thanks, Karl Hauschild

[karl.hauschild@…]

Cc Me!

[jmroot (Joshua Root)]

Are you setting DYLD_LIBRARY_PATH or something?

[karl.hauschild@…]

Replying to jmr@…:

Are you setting DYLD_LIBRARY_PATH or something?

Yes, I have set

export  DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/opt/local/lib

But, I have now realised that this interferes with my system libraries. ie. Now if I try and run
[hauschild] : open any_old_file.pdf

I get the same

dyld: Library not loaded: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
  Referenced from: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
  Reason: Incompatible library version: vecLib requires version 1.0.0 or later, but libLAPACK.dylib provides version 0.0.0
Trace/BPT trap

I could of course add "/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A"
to the path, but this just moves the problem to another library

[jmroot (Joshua Root)]

OK, so this particular problem is caused by your configuration. (There are a number of other tickets open against geant4 of course.)

[karl.hauschild@…]

Yep, looks I noticed this behaviour after I installed geant4 by coincidence. Just uninstalled it and the problem remains if I have

export  DYLD_LIBRARY_PATH=$DYLD_LIBRARY_PATH:/opt/local/lib

but a change to

export  LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/local/lib

gets back the system functionality of "open". Will have to see what the above change breaks instead.

Will try reinstalling geant

Cheers.

[karl.hauschild@…]

OK. for closure :

I started by removing atlas which provided the libLAPACK and tried again with the
[hauschild] : open any_old_file.pdf

which then gave another error, remove offending library (and many dependencies before being able to do so)...etc...etc..etc
the the way down to point where mesa was uninstalled. Now these system libraries and /opt/local/lib appear to be living
side by side.

[karl.hauschild@…]

see ​http://trac.macports.org/ticket/26669 for resolution