py27-numpy @1.5.1 +python build failure: library not found for -lgfortranbegin

[everbloom@…]

Run port install py27-numpy but it seems to be having problems with fortran. It's giving ld: library not found for -lgfortranbegin in the logs. Full log attached.

Is it trying to use the wrong fortran (somehow)? I'm stuck.

The same problem occurs with py26-numpy.

[everbloom@…]

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py27-numpy/main.log

[blb@…]

:info:build /usr/bin/gfortran -Wall build/temp.macosx-10.6-x86_64-2.7/numpy/linalg/lapack_litemodule.o build/temp.macosx-10.6-x86_64-2.7/numpy/linalg/python_xerbla.o -L/opt/local/lib -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -Lbuild/temp.macosx-10.6-x86_64-2.7 -llapack -lptf77blas -lptcblas -latlas -lgfortran -o build/lib.macosx-10.6-x86_64-2.7/numpy/linalg/lapack_lite.so -undefined dynamic_lookup -bundle
2105	:info:build ld: library not found for -lgfortranbegin

Where did /usr/bin/gfortran come from? I believe the py*-numpy ports depend on gcc to get a gfortran, but that should then be installed in /opt/local.

[everbloom@…]

According to itself, /usr/bin/gfortran is GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5659) + GF 4.2.4. So I guess it came with Xcode and Apple's gcc install.

whereis gfortran tells me about the /usr/bin/gfortran as well. However, in /opt/local/bin there's a gfortran-mp-4.4 which I guess is the macports gfortran. Is there a significant difference between macports gfortran and apple gfortran? Why is the port trying to use a non-mp version?

[blb@…]

Replying to everbloom@…:

According to itself, /usr/bin/gfortran is GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5659) + GF 4.2.4. So I guess it came with Xcode and Apple's gcc install.

Is that Xcode 4? If so, maybe Apple is including a fortran compiler now...

whereis gfortran tells me about the /usr/bin/gfortran as well. However, in /opt/local/bin there's a gfortran-mp-4.4 which I guess is the macports gfortran. Is there a significant difference between macports gfortran and apple gfortran? Why is the port trying to use a non-mp version?

That's a good question, the Portfile appears to be trying to use the MacPorts' one, but looks like numpy's build setup may be ignoring what the Portfile says.

[everbloom@…]

Replying to blb@…:

Replying to everbloom@…:

According to itself, /usr/bin/gfortran is GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5659) + GF 4.2.4. So I guess it came with Xcode and Apple's gcc install.

Is that Xcode 4? If so, maybe Apple is including a fortran compiler now...

Just Xcode 3.x, so I don't know how I got an Apple gfortran! I'm more likely to have the build that R tools come with.

whereis gfortran tells me about the /usr/bin/gfortran as well. However, in /opt/local/bin there's a gfortran-mp-4.4 which I guess is the macports gfortran. Is there a significant difference between macports gfortran and apple gfortran? Why is the port trying to use a non-mp version?

That's a good question, the Portfile appears to be trying to use the MacPorts' one, but looks like numpy's build setup may be ignoring what the Portfile says.

Buggery.

To my amazement, renaming /usr/bin/gfortran to /usr/bin/not-gfortran seems to have forced it to use mp's gfortran and it installed fine. That's *weird*, and not very nice of numpy to pick its own gfortran :(.

[ram@…]

The numpy distutils are very picky, Xcode doesn't provide a gfortran compiler so his compiler has come from somewhere else. Going to close this one as worksforme as you were able to work round this issue.