Opened 12 years ago
Closed 12 years ago
#32050 closed submission (fixed)
Portfile for RAxML 7.2.9
| Reported by: | mattoates@… | Owned by: | macports-tickets@… |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | |
| Keywords: | Cc: | matt.cottrell@… | |
| Port: | raxml |
Description
RAxML version 7.2.9 released by Alexandros Stamatakis in October 2010 A parallel command line program for constructing phylogenetic trees through maximum likelihood techniques.
Attachments (2)
Change History (6)
Changed 12 years ago by mattoates@…
| Attachment: | raxml_port_mattoates.tar.gz added |
|---|
comment:1 follow-up: 2 Changed 12 years ago by mf2k (Frank Schima)
| Keywords: | new Portfile removed |
|---|---|
| Port: | raxml added |
| Version: | 2.0.3 |
comment:2 Changed 12 years ago by matt.cottrell@…
I need this raxml port to satisfy a dependency in the py27-qiime port that I am making. It builds and I use it in my work as a microbial oceanographer. This raxml port would be a very useful addition to MacPorts because it is a tool used by a wide range of scientists using phylogenetic analysis of DNA and protein sequences in their work. Could someone take a look at it and commit?
comment:4 Changed 12 years ago by jmroot (Joshua Root)
| Resolution: | → fixed |
|---|---|
| Status: | new → closed |
Committed in r94486 with some changes:
- Fixed to use correct CFLAGS, LDFLAGS and CC
- Made default status of sse3 variant conditional on whether sse3 is available
- Added check that mpi variant is not set before making pthreads default
- Corrected license version range
- Cleaned up whitespace
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Portfile for RAxML with directory structure