| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | # $Id: Portfile 44414 2008-12-28 05:42:53Z mcalhoun@macports.org $ |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | PortGroup python25 1.0 |
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| 6 | |
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| 7 | name py25-pymvpa |
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| 8 | version 0.4.1 |
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| 9 | categories python |
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| 10 | |
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| 11 | platforms darwin |
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| 12 | maintainers jameskyle@ucla.edu |
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| 13 | description PyMVPA is a Python module intended to ease pattern classification analyses of large datasets. |
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| 14 | |
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| 15 | long_description ${description}. In the neuroimaging contexts such analysis techniques are also known as decoding or MVPA analysis. PyMVPA provides high-level abstraction of typical processing steps and a number of implementations of some popular algorithms. |
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| 16 | |
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| 17 | homepage http://www.pymvpa.org |
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| 18 | fetch.type git |
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| 19 | git.url git://git.debian.org/git/pkg-exppsy/pymvpa.git |
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| 20 | git.branch upstream/0.4.1 |
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| 21 | |
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| 22 | depends_lib port:py25-numpy \ |
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| 23 | port:git-core \ |
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| 24 | port:py25-setuptools |
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| 25 | configure.args |
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| 26 | |
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| 27 | build.env CFLAGS='-I${prefix}/include -L${prefix}/lib' |
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| 28 | |
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| 29 | patch.pre_args -p1 |
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| 30 | patchfiles patch-mvpa.diff |
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| 31 | |
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| 32 | default_variants +pywavelet +libsvm +hcluster +pynifti +shogun +scipy |
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| 33 | |
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| 34 | variant scipy description {Add support for scipy libraries} { |
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| 35 | depends_lib-append port:py25-scipy |
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| 36 | } |
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| 37 | |
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| 38 | variant pynifti description {Add support for the Nifti file format} { |
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| 39 | depends_lib-append port:py25-pynifti |
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| 40 | } |
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| 41 | |
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| 42 | variant hcluster description {perform cluster analysis and plot dendograms of results} { |
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| 43 | depends_lib-append port:py25-hcluster |
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| 44 | } |
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| 45 | |
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| 46 | variant libsvm description {compile the libsvm classifier extension} { |
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| 47 | depends_lib-append port:libsvm \ |
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| 48 | port:swig |
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| 49 | configure.args --with-libsvm |
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| 50 | } |
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| 51 | |
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| 52 | variant matplotlib description {include support for the matplotlib library} { |
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| 53 | ui_msg "The default matplotlib build may fail to compile." |
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| 54 | ui_msg "If this is the case, please build with +wxpython variant." |
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| 55 | depends_lib-append port:py25-matplotlib |
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| 56 | } |
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| 57 | |
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| 58 | variant pywavelet description {include support for pywavelet module} { |
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| 59 | depends_lib-append port:py25-pywavelets |
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| 60 | } |
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| 61 | |
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| 62 | variant shogun description {compile support for the py25-shogun classifiers} { |
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| 63 | depends_lib-append port:py25-shogun |
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| 64 | } |
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| 65 | build { |
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| 66 | system "cd ${worksrcpath} && ${build.env} python2.5 setup.py build_ext ${configure.args}" |
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| 67 | system "cd ${worksrcpath} && ${build.env} python2.5 setup.py build ${configure.args}" |
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| 68 | } |
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| 69 | |
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| 70 | post-destroot { |
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| 71 | xinstall -m 755 -d "${destroot}${prefix}/share/doc/" |
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| 72 | file delete ${worksrcpath}/doc/todo.txt |
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| 73 | file delete ${worksrcpath}/doc/legal.txt |
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| 74 | file delete ${worksrcpath}/doc/changelog.txt |
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| 75 | |
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| 76 | file copy ${worksrcpath}/TODO ${worksrcpath}/doc/ |
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| 77 | file copy ${worksrcpath}/COPYING ${worksrcpath}/doc/ |
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| 78 | file copy ${worksrcpath}/Changelog ${worksrcpath}/doc/ |
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| 79 | file copy ${worksrcpath}/doc ${destroot}${prefix}/share/doc/mvpa |
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| 80 | } |
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