| 1 | # $Id$ |
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| 2 | |
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| 3 | PortSystem 1.0 |
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| 4 | |
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| 5 | name tophat |
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| 6 | version 1.1.1 |
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| 7 | categories science biology |
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| 8 | platforms darwin |
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| 9 | maintainers gmail.com:haroldpimentel |
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| 10 | description TopHat is a fast splice junction mapper for RNA-Seq reads. |
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| 11 | long_description TopHat is a fast splice junction mapper for RNA-Seq reads. It aligns RNA-Seq reads to mammalian-sized genomes using the ultra high-throughput short read aligner Bowtie, and then analyzes the mapping results to identify splice junctions between exons. |
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| 12 | homepage http://tophat.cbcb.umd.edu/ |
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| 13 | master_sites http://tophat.cbcb.umd.edu/downloads/ |
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| 14 | checksums md5 33b37a4269c35ba7ef3c134f61c6a875 \ |
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| 15 | sha1 4671094ce142820ed2d4ba8a57eb787e215d2d3e \ |
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| 16 | rmd160 b758a9f9d8e758a146ecac4dc21db9d154fb3faf |
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| 17 | use_parallel_build no |
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| 18 | depends_lib port:zlib \ |
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| 19 | port:samtools \ |
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| 20 | port:bowtie |
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