Ticket #39529: main.log

File main.log, 58.4 KB (added by richard.katz@…, 11 years ago)

Main log

Line 
1version:1
2:debug:main epoch: in tree: 0 installed: 0
3:debug:main gfortran 4.7.1_2 exists in the ports tree
4:debug:main gfortran 4.7.1_2  is the latest installed
5:debug:main gfortran 4.7.1_2  is active
6:debug:main Merging existing variants '' into variants
7:debug:main new fully merged portvariants:
8:debug:main Changing to port directory: /opt/scienceports/lang/gfortran
9:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
10:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
11:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
12:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
13:debug:main universal_variant is false, so not adding the default universal variant
14:debug:main No need to upgrade! gfortran 4.7.1_2 >= gfortran 4.7.1_2
15:debug:main epoch: in tree: 0 installed: 0
16:debug:main gmp 5.0.5_0 exists in the ports tree
17:debug:main gmp 5.0.5_0  is the latest installed
18:debug:main gmp 5.0.5_0  is active
19:debug:main Merging existing variants '' into variants
20:debug:main new fully merged portvariants:
21:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp
22:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
23:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
24:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
25:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
26:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
27:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
28:debug:main universal variant already exists, so not adding the default one
29:debug:main No need to upgrade! gmp 5.0.5_0 >= gmp 5.0.5_0
30:debug:main epoch: in tree: 0 installed: 0
31:debug:main mpfr 3.1.1-p2_0 exists in the ports tree
32:debug:main mpfr 3.1.1-p2_0  is the latest installed
33:debug:main mpfr 3.1.1-p2_0  is active
34:debug:main Merging existing variants '' into variants
35:debug:main new fully merged portvariants:
36:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr
37:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
38:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
39:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
40:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
41:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
42:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
43:debug:main universal variant already exists, so not adding the default one
44:debug:main No need to upgrade! mpfr 3.1.1-p2_0 >= mpfr 3.1.1-p2_0
45:debug:main epoch: in tree: 0 installed: 0
46:debug:main libmpc 1.0.1_0 exists in the ports tree
47:debug:main libmpc 1.0.1_0  is the latest installed
48:debug:main libmpc 1.0.1_0  is active
49:debug:main Merging existing variants '' into variants
50:debug:main new fully merged portvariants:
51:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc
52:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
53:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
54:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
55:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
56:debug:main adding the default universal variant
57:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
58:debug:main No need to upgrade! libmpc 1.0.1_0 >= libmpc 1.0.1_0
59:debug:main epoch: in tree: 0 installed: 0
60:debug:main ppl 1.0_1 exists in the ports tree
61:debug:main ppl 1.0_1  is the latest installed
62:debug:main ppl 1.0_1  is active
63:debug:main Merging existing variants '' into variants
64:debug:main new fully merged portvariants:
65:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ppl
66:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
67:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
68:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
69:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
70:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
71:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
72:debug:main universal variant already exists, so not adding the default one
73:debug:main No need to upgrade! ppl 1.0_1 >= ppl 1.0_1
74:debug:main epoch: in tree: 1 installed: 1
75:debug:main glpk 4.48_0 exists in the ports tree
76:debug:main glpk 4.48_0  is the latest installed
77:debug:main glpk 4.48_0  is active
78:debug:main Merging existing variants '' into variants
79:debug:main new fully merged portvariants:
80:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/glpk
81:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
82:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
83:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
84:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
85:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/archcheck-1.0.tcl
86:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
87:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
88:debug:main universal variant already exists, so not adding the default one
89:debug:main No need to upgrade! glpk 4.48_0 >= glpk 4.48_0
90:debug:main epoch: in tree: 0 installed: 0
91:debug:main zlib 1.2.8_0 exists in the ports tree
92:debug:main zlib 1.2.8_0  is the latest installed
93:debug:main zlib 1.2.8_0  is active
94:debug:main Merging existing variants '' into variants
95:debug:main new fully merged portvariants:
96:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
97:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
98:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
99:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
100:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
101:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
102:debug:main adding the default universal variant
103:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
104:debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
105:debug:main Found Dependency: path: /usr/bin filename: clang regex: ^clang$
106:debug:main epoch: in tree: 0 installed: 0
107:debug:main hdf5-18 1.8.10_0 exists in the ports tree
108:debug:main hdf5-18 1.8.10_0 +clang is the latest installed
109:debug:main hdf5-18 1.8.10_0 +clang+openmpi is active
110:debug:main Merging existing variants '+clang+openmpi' into variants
111:debug:main new fully merged portvariants: openmpi + clang +
112:debug:main Changing to port directory: /opt/scienceports/science/hdf5-18
113:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
114:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
115:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
116:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
117:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
118:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
119:debug:main Using group file /opt/scienceports/_resources/port1.0/group/mpi-1.0.tcl
120:debug:main Using group file /opt/scienceports/_resources/port1.0/group/fortran-1.0.tcl
121:debug:main Using group file /opt/scienceports/_resources/port1.0/group/multiplecompilers-1.0.tcl
122:debug:main Using group file /opt/scienceports/_resources/port1.0/group/debug-1.0.tcl
123:debug:main adding the default debug variant
124:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
125:debug:main universal variant already exists, so not adding the default one
126:debug:main Executing variant clang provides clang
127:debug:main Executing variant openmpi provides openmpi
128:debug:main No need to upgrade! hdf5-18 1.8.10_0 >= hdf5-18 1.8.10_0
129:debug:main Found Dependency: path: /usr/bin filename: clang regex: ^clang$
130:debug:main clang is *not* installed by MacPorts
131:debug:main Searching for dependency: clang
132:debug:main Didn't find receipt, going to depspec regex for: clang
133:debug:main Found Dependency: path: /usr/bin filename: clang regex: ^clang$
134:debug:main clang not installed, soft dependency satisfied
135:debug:main epoch: in tree: 0 installed: 0
136:debug:main openmpi 1.6.3_0 exists in the ports tree
137:debug:main openmpi 1.6.3_0 +clang is the latest installed
138:debug:main openmpi 1.6.3_0 +gcc47 is active
139:debug:main Merging existing variants '+gcc47' into variants
140:debug:main new fully merged portvariants: gcc47 +
141:debug:main Changing to port directory: /opt/scienceports/science/openmpi
142:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
143:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
144:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
145:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
146:debug:main Using group file /opt/scienceports/_resources/port1.0/group/multiplecompilers-1.0.tcl
147:debug:main Using group file /opt/scienceports/_resources/port1.0/group/debug-1.0.tcl
148:debug:main adding the default debug variant
149:debug:main universal_variant is false, so not adding the default universal variant
150:debug:main Executing variant gcc47 provides gcc47
151:debug:main No need to upgrade! openmpi 1.6.3_0 >= openmpi 1.6.3_0
152:debug:main epoch: in tree: 1 installed: 1
153:debug:main gcc47 4.7.3_0 exists in the ports tree
154:debug:main gcc47 4.7.3_0  is the latest installed
155:debug:main gcc47 4.7.3_0  is active
156:debug:main Merging existing variants '' into variants
157:debug:main new fully merged portvariants:
158:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc47
159:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
160:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
161:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
162:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
163:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
164:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
165:debug:main compiler llvm-gcc-4.2 2336.11.00 not blacklisted because does not match {llvm-gcc-4.2 < 2336.1}
166:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
167:debug:main universal variant already exists, so not adding the default one
168:debug:main No need to upgrade! gcc47 4.7.3_0 >= gcc47 4.7.3_0
169:debug:main epoch: in tree: 0 installed: 0
170:debug:main libiconv 1.14_0 exists in the ports tree
171:debug:main libiconv 1.14_0  is the latest installed
172:debug:main libiconv 1.14_0  is active
173:debug:main Merging existing variants '' into variants
174:debug:main new fully merged portvariants:
175:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
176:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
177:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
178:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
179:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
180:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
181:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
182:debug:main universal variant already exists, so not adding the default one
183:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
184:debug:main epoch: in tree: 1 installed: 1
185:debug:main cloog 0.17.0_1 exists in the ports tree
186:debug:main cloog 0.17.0_1  is the latest installed
187:debug:main cloog 0.17.0_1  is active
188:debug:main Merging existing variants '' into variants
189:debug:main new fully merged portvariants:
190:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cloog
191:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
192:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
193:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
194:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
195:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
196:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
197:debug:main universal variant already exists, so not adding the default one
198:debug:main No need to upgrade! cloog 0.17.0_1 >= cloog 0.17.0_1
199:debug:main epoch: in tree: 1 installed: 1
200:debug:main isl 0.10_1 exists in the ports tree
201:debug:main isl 0.10_1  is the latest installed
202:debug:main isl 0.10_1  is active
203:debug:main Merging existing variants '' into variants
204:debug:main new fully merged portvariants:
205:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl
206:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
207:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
208:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
209:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
210:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
211:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
212:debug:main universal variant already exists, so not adding the default one
213:debug:main No need to upgrade! isl 0.10_1 >= isl 0.10_1
214:debug:main epoch: in tree: 0 installed: 0
215:debug:main gcc_select 0.1_8 exists in the ports tree
216:debug:main gcc_select 0.1_8  is the latest installed
217:debug:main gcc_select 0.1_8  is active
218:debug:main Merging existing variants '' into variants
219:debug:main new fully merged portvariants:
220:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/gcc_select
221:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
222:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
223:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
224:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
225:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
226:debug:main universal_variant is false, so not adding the default universal variant
227:debug:main No need to upgrade! gcc_select 0.1_8 >= gcc_select 0.1_8
228:debug:main epoch: in tree: 0 installed: 0
229:debug:main ld64 136_1 exists in the ports tree
230:debug:main ld64 136_1 +llvm32 is the latest installed
231:debug:main ld64 136_1 +llvm32 is active
232:debug:main Merging existing variants '+llvm32' into variants
233:debug:main new fully merged portvariants: llvm32 +
234:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
235:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
236:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
237:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
238:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
239:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
240:debug:main universal variant already exists, so not adding the default one
241:debug:main Executing variant llvm32 provides llvm32
242:debug:main No need to upgrade! ld64 136_1 >= ld64 136_1
243:debug:main epoch: in tree: 1 installed: 1
244:debug:main llvm-3.2 3.2_1 exists in the ports tree
245:debug:main llvm-3.2 3.2_1  is the latest installed
246:debug:main llvm-3.2 3.2_1  is active
247:debug:main Merging existing variants '' into variants
248:debug:main new fully merged portvariants:
249:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.2
250:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
251:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
252:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
253:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
254:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
255:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
256:debug:main universal variant already exists, so not adding the default one
257:debug:main No need to upgrade! llvm-3.2 3.2_1 >= llvm-3.2 3.2_1
258:debug:main epoch: in tree: 0 installed: 0
259:debug:main libffi 3.0.13_0 exists in the ports tree
260:debug:main libffi 3.0.13_0  is the latest installed
261:debug:main libffi 3.0.13_0  is active
262:debug:main Merging existing variants '' into variants
263:debug:main new fully merged portvariants:
264:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
265:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
266:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
267:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
268:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
269:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
270:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
271:debug:main universal variant already exists, so not adding the default one
272:debug:main No need to upgrade! libffi 3.0.13_0 >= libffi 3.0.13_0
273:debug:main epoch: in tree: 0 installed: 0
274:debug:main perl5 5.12.4_0 exists in the ports tree
275:debug:main perl5 5.12.4_0 +perl5_12 is the latest installed
276:debug:main perl5 5.12.4_0 +perl5_12 is active
277:debug:main Merging existing variants '+perl5_12' into variants
278:debug:main new fully merged portvariants: perl5_12 +
279:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5
280:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
281:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
282:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
283:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
284:debug:main universal_variant is false, so not adding the default universal variant
285:debug:main Executing variant perl5_12 provides perl5_12
286:debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0
287:debug:main epoch: in tree: 0 installed: 0
288:debug:main perl5.12 5.12.4_2 exists in the ports tree
289:debug:main perl5.12 5.12.4_2  is the latest installed
290:debug:main perl5.12 5.12.4_2  is active
291:debug:main Merging existing variants '' into variants
292:debug:main new fully merged portvariants:
293:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.12
294:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
295:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
296:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
297:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
298:debug:main adding the default universal variant
299:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
300:debug:main No need to upgrade! perl5.12 5.12.4_2 >= perl5.12 5.12.4_2
301:debug:main epoch: in tree: 0 installed: 0
302:debug:main gdbm 1.10_2 exists in the ports tree
303:debug:main gdbm 1.10_2  is the latest installed
304:debug:main gdbm 1.10_2  is active
305:debug:main Merging existing variants '' into variants
306:debug:main new fully merged portvariants:
307:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm
308:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
309:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
310:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
311:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
312:debug:main adding the default universal variant
313:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
314:debug:main No need to upgrade! gdbm 1.10_2 >= gdbm 1.10_2
315:debug:main epoch: in tree: 0 installed: 0
316:debug:main gettext 0.18.2.1_0 exists in the ports tree
317:debug:main gettext 0.18.2.1_0  is the latest installed
318:debug:main gettext 0.18.2.1_0  is active
319:debug:main Merging existing variants '' into variants
320:debug:main new fully merged portvariants:
321:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
322:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
323:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
324:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
325:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
326:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
327:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
328:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
329:debug:main compiler clang 425.0.28 not blacklisted because does not match {clang < 211.10.1}
330:debug:main universal variant already exists, so not adding the default one
331:debug:main No need to upgrade! gettext 0.18.2.1_0 >= gettext 0.18.2.1_0
332:debug:main epoch: in tree: 0 installed: 0
333:debug:main expat 2.1.0_0 exists in the ports tree
334:debug:main expat 2.1.0_0  is the latest installed
335:debug:main expat 2.1.0_0  is active
336:debug:main Merging existing variants '' into variants
337:debug:main new fully merged portvariants:
338:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
339:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
340:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
341:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
342:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
343:debug:main adding the default universal variant
344:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
345:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
346:debug:main epoch: in tree: 0 installed: 0
347:debug:main ncurses 5.9_2 exists in the ports tree
348:debug:main ncurses 5.9_2  is the latest installed
349:debug:main ncurses 5.9_2  is active
350:debug:main Merging existing variants '' into variants
351:debug:main new fully merged portvariants:
352:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
353:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
354:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
355:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
356:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
357:debug:main adding the default universal variant
358:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
359:debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
360:debug:main epoch: in tree: 0 installed: 0
361:debug:main llvm_select 0.2_0 exists in the ports tree
362:debug:main llvm_select 0.2_0  is the latest installed
363:debug:main llvm_select 0.2_0  is active
364:debug:main Merging existing variants '' into variants
365:debug:main new fully merged portvariants:
366:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
367:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
368:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
369:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
370:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
371:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
372:debug:main universal_variant is false, so not adding the default universal variant
373:debug:main No need to upgrade! llvm_select 0.2_0 >= llvm_select 0.2_0
374:debug:main epoch: in tree: 0 installed: 0
375:debug:main cctools 839_0 exists in the ports tree
376:debug:main cctools 839_0 +llvm32 is the latest installed
377:debug:main cctools 839_0 +llvm32 is active
378:debug:main Merging existing variants '+llvm32' into variants
379:debug:main new fully merged portvariants: llvm32 +
380:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools
381:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
382:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
383:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
384:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
385:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
386:debug:main universal variant already exists, so not adding the default one
387:debug:main Executing variant llvm32 provides llvm32
388:debug:main No need to upgrade! cctools 839_0 >= cctools 839_0
389:debug:main epoch: in tree: 0 installed: 0
390:debug:main cctools-headers 839_0 exists in the ports tree
391:debug:main cctools-headers 839_0  is the latest installed
392:debug:main cctools-headers 839_0  is active
393:debug:main Merging existing variants '' into variants
394:debug:main new fully merged portvariants:
395:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools-headers
396:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
397:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
398:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
399:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
400:debug:main universal_variant is false, so not adding the default universal variant
401:debug:main No need to upgrade! cctools-headers 839_0 >= cctools-headers 839_0
402:debug:main epoch: in tree: 2 installed: 2
403:debug:main libstdcxx 4.8.1_0 exists in the ports tree
404:debug:main libstdcxx 4.8.1_0  is the latest installed
405:debug:main libstdcxx 4.8.1_0  is active
406:debug:main Merging existing variants '' into variants
407:debug:main new fully merged portvariants:
408:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc48
409:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
410:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
411:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
412:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
413:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
414:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
415:debug:main compiler llvm-gcc-4.2 2336.11.00 not blacklisted because does not match {llvm-gcc-4.2 < 2336.1}
416:debug:main compiler clang 425.0.28 not blacklisted because does not match {clang < 425}
417:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
418:debug:main universal variant already exists, so not adding the default one
419:debug:main No need to upgrade! libstdcxx 4.8.1_0 >= libstdcxx 4.8.1_0
420:debug:main epoch: in tree: 0 installed: 0
421:debug:main curl 7.31.0_0 exists in the ports tree
422:debug:main curl 7.31.0_0 +ssl is the latest installed
423:debug:main curl 7.31.0_0 +ssl is active
424:debug:main Merging existing variants '+ssl' into variants
425:debug:main new fully merged portvariants: ssl +
426:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl
427:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
428:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
429:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
430:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
431:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
432:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
433:debug:main universal variant already exists, so not adding the default one
434:debug:main Executing variant ssl provides ssl
435:debug:main No need to upgrade! curl 7.31.0_0 >= curl 7.31.0_0
436:debug:main epoch: in tree: 0 installed: 0
437:debug:main libidn 1.26_0 exists in the ports tree
438:debug:main libidn 1.26_0  is the latest installed
439:debug:main libidn 1.26_0  is active
440:debug:main Merging existing variants '' into variants
441:debug:main new fully merged portvariants:
442:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/mail/libidn
443:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
444:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
445:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
446:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
447:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
448:debug:main adding the default universal variant
449:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
450:debug:main No need to upgrade! libidn 1.26_0 >= libidn 1.26_0
451:debug:main epoch: in tree: 1 installed: 1
452:debug:main openssl 1.0.1e_1 exists in the ports tree
453:debug:main openssl 1.0.1e_1  is the latest installed
454:debug:main openssl 1.0.1e_1  is active
455:debug:main Merging existing variants '' into variants
456:debug:main new fully merged portvariants:
457:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
458:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
459:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
460:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
461:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
462:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
463:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
464:debug:main universal variant already exists, so not adding the default one
465:debug:main No need to upgrade! openssl 1.0.1e_1 >= openssl 1.0.1e_1
466:debug:main epoch: in tree: 0 installed: 0
467:debug:main curl-ca-bundle 7.31.0_0 exists in the ports tree
468:debug:main curl-ca-bundle 7.31.0_0  is the latest installed
469:debug:main curl-ca-bundle 7.31.0_0  is active
470:debug:main Merging existing variants '' into variants
471:debug:main new fully merged portvariants:
472:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl
473:debug:main OS darwin/12.4.0 (Mac OS X 10.8) arch i386
474:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
475:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
476:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
477:debug:main universal_variant is false, so not adding the default universal variant
478:debug:main No need to upgrade! curl-ca-bundle 7.31.0_0 >= curl-ca-bundle 7.31.0_0
479:msg:main --->  Computing dependencies for netcdf:info:main .:debug:main netcdf has no conflicts
480:debug:main Searching for dependency: gfortran
481:debug:main Found Dependency: receipt exists for gfortran
482:debug:main Found Dependency: path: /usr/bin filename: clang regex: ^clang$
483:debug:main Searching for dependency: clang
484:debug:main Didn't find receipt, going to depspec regex for: clang
485:debug:main Found Dependency: path: /usr/bin filename: clang regex: ^clang$
486:debug:main Searching for dependency: hdf5-18
487:debug:main Found Dependency: receipt exists for hdf5-18
488:debug:main Searching for dependency: curl
489:debug:main Found Dependency: receipt exists for curl
490:msg:main
491:debug:main Executing org.macports.main (netcdf)
492:debug:main changing euid/egid - current euid: 0 - current egid: 0
493:debug:main egid changed to: 501
494:debug:main euid changed to: 504
495:debug:main Skipping completed org.macports.archivefetch (netcdf)
496:debug:main Privilege de-escalation not attempted as not running as root.
497:debug:main Skipping completed org.macports.fetch (netcdf)
498:debug:main Privilege de-escalation not attempted as not running as root.
499:debug:main Skipping completed org.macports.checksum (netcdf)
500:debug:main Privilege de-escalation not attempted as not running as root.
501:debug:main Skipping completed org.macports.extract (netcdf)
502:debug:main Privilege de-escalation not attempted as not running as root.
503:debug:main Skipping completed org.macports.patch (netcdf)
504:debug:main Privilege de-escalation not attempted as not running as root.
505:debug:configure configure phase started at Mon Jul 15 09:35:56 BST 2013
506:notice:configure --->  Configuring netcdf
507:debug:configure Using compiler 'Mac OS X clang'
508:debug:configure Executing proc-pre-org.macports.configure-configure-0
509:debug:configure Executing org.macports.configure (netcdf)
510:debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -mtune=native -fno-common -arch x86_64' CPPFLAGS='-I/opt/local/include -mtune=native -DNDEBUG' CXXFLAGS='-pipe -O2 -mtune=native -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.8' CXX='clang++' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_scienceports_science_netcdf/netcdf/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -mtune=native -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' FCFLAGS='-pipe -O2 -mtune=native -m64' OBJC='clang' INSTALL='/usr/bin/install -c' F90='gfortran' FC='gfortran' FFLAGS='-pipe -O2 -mtune=native -m64' OBJCFLAGS='-pipe -O2 -arch x86_64' F77='gfortran' CC_PRINT_OPTIONS='YES' CC='clang'
511:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_scienceports_science_netcdf/netcdf/work/netcdf-4.2.1.1" && ./configure --prefix=/opt/local --disable-doxygen --enable-netcdf-4'
512:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_scienceports_science_netcdf/netcdf/work/netcdf-4.2.1.1" && ./configure --prefix=/opt/local --disable-doxygen --enable-netcdf-4
513:info:configure configure: netCDF 4.2.1.1
514:info:configure checking build system type... x86_64-apple-darwin12.4.0
515:info:configure checking host system type... x86_64-apple-darwin12.4.0
516:info:configure checking target system type... x86_64-apple-darwin12.4.0
517:info:configure checking for a BSD-compatible install... /usr/bin/install -c
518:info:configure checking whether build environment is sane... yes
519:info:configure checking for a thread-safe mkdir -p... ./install-sh -c -d
520:info:configure checking for gawk... no
521:info:configure checking for mawk... no
522:info:configure checking for nawk... no
523:info:configure checking for awk... awk
524:info:configure checking whether make sets $(MAKE)... yes
525:info:configure configure: checking user options
526:info:configure checking whether a win32 DLL is desired... no
527:info:configure checking whether a NCIO_MINBLOCKSIZE was specified... 256
528:info:configure checking if fsync support is enabled... yes
529:info:configure checking whether extra valgrind tests should be run... no
530:info:configure checking whether we should try to build netCDF-4... yes
531:info:configure checking whether reading of HDF4 SD files is to be enabled... no
532:info:configure checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no
533:info:configure checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no
534:info:configure checking whether extra example tests should be run... no
535:info:configure checking whether parallel IO tests should be run... no
536:info:configure checking whether a default chunk size in bytes was specified... 4194304
537:info:configure checking whether a maximum per-variable cache size for HDF5 was specified... 67108864
538:info:configure checking whether a number of chunks for the default per-variable cache was specified... 10
539:info:configure checking whether a default file cache size for HDF5 was specified... 4194304
540:info:configure checking whether a default file cache maximum number of elements for HDF5 was specified... 1009
541:info:configure checking whether a default cache preemption for HDF5 was specified... 0.75
542:info:configure checking whether netCDF-4 logging is enabled... no
543:info:configure checking whether cdmremote client is to be built... no
544:info:configure checking whether DAP client is to be built... yes
545:info:configure checking for style of include used by make... GNU
546:info:configure checking for gcc... clang
547:info:configure checking whether the C compiler works... yes
548:info:configure checking for C compiler default output file name... a.out
549:info:configure checking for suffix of executables...
550:info:configure checking whether we are cross compiling... no
551:info:configure checking for suffix of object files... o
552:info:configure checking whether we are using the GNU C compiler... yes
553:info:configure checking whether clang accepts -g... yes
554:info:configure checking for clang option to accept ISO C89... none needed
555:info:configure checking dependency style of clang... gcc3
556:info:configure checking for curl_easy_setopt in -lcurl... yes
557:info:configure checking for library containing curl_easy_setopt... -lcurl
558:info:configure checking whether dap remote testing should be enabled (default on)... yes
559:info:configure checking whether netcdf4 group names should be enabled (default on)... yes
560:info:configure checking whether the time-consuming dap tests should be enabled (default off)... no
561:info:configure checking whether netCDF extra tests should be run (developers only)... no
562:info:configure checking whether FFIO will be used... no
563:info:configure checking whether examples should be built... yes
564:info:configure checking whether v2 netCDF API should be built... yes
565:info:configure checking whether the ncgen/ncdump/nccopy should be built... yes
566:info:configure checking whether test should be built and run... yes
567:info:configure checking whether large file (> 2GB) tests should be run... no
568:info:configure checking whether benchmaks should be run (experimental)... no
569:info:configure checking whether extreme numbers should be used in tests... yes
570:info:configure checking where to put large temp files if large file tests are run... .
571:info:configure configure: finding C compiler
572:info:configure checking for gcc... (cached) clang
573:info:configure checking whether we are using the GNU C compiler... (cached) yes
574:info:configure checking whether clang accepts -g... (cached) yes
575:info:configure checking for clang option to accept ISO C89... (cached) none needed
576:info:configure checking dependency style of clang... (cached) gcc3
577:info:configure checking whether clang and cc understand -c and -o together... yes
578:info:configure checking for an ANSI C-conforming const... yes
579:info:configure checking whether a CURLOPT_KEYPASSWD is defined... yes
580:info:configure configure: setting up libtool
581:info:configure checking how to print strings... printf
582:info:configure checking for a sed that does not truncate output... /usr/bin/sed
583:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
584:info:configure checking for egrep... /usr/bin/grep -E
585:info:configure checking for fgrep... /usr/bin/grep -F
586:info:configure checking for ld used by clang... /usr/bin/ld
587:info:configure checking if the linker (/usr/bin/ld) is GNU ld... no
588:info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm
589:info:configure checking the name lister (/opt/local/bin/nm) interface... BSD nm
590:info:configure checking whether ln -s works... yes
591:info:configure checking the maximum length of command line arguments... 196608
592:info:configure checking whether the shell understands some XSI constructs... yes
593:info:configure checking whether the shell understands "+="... yes
594:info:configure checking how to convert x86_64-apple-darwin12.4.0 file names to x86_64-apple-darwin12.4.0 format... func_convert_file_noop
595:info:configure checking how to convert x86_64-apple-darwin12.4.0 file names to toolchain format... func_convert_file_noop
596:info:configure checking for /usr/bin/ld option to reload object files... -r
597:info:configure checking for objdump... no
598:info:configure checking how to recognize dependent libraries... pass_all
599:info:configure checking for dlltool... no
600:info:configure checking how to associate runtime and link libraries... printf %s\n
601:info:configure checking for ar... ar
602:info:configure checking for archiver @FILE support... no
603:info:configure checking for strip... strip
604:info:configure checking for ranlib... ranlib
605:info:configure checking command to parse /opt/local/bin/nm output from clang object... ok
606:info:configure checking for sysroot... no
607:info:configure checking for mt... no
608:info:configure checking if : is a manifest tool... no
609:info:configure checking for dsymutil... dsymutil
610:info:configure checking for nmedit... nmedit
611:info:configure checking for lipo... lipo
612:info:configure checking for otool... otool
613:info:configure checking for otool64... no
614:info:configure checking for -single_module linker flag... yes
615:info:configure checking for -exported_symbols_list linker flag... yes
616:info:configure checking for -force_load linker flag... yes
617:info:configure checking how to run the C preprocessor... clang -E
618:info:configure checking for ANSI C header files... yes
619:info:configure checking for sys/types.h... yes
620:info:configure checking for sys/stat.h... yes
621:info:configure checking for stdlib.h... yes
622:info:configure checking for string.h... yes
623:info:configure checking for memory.h... yes
624:info:configure checking for strings.h... yes
625:info:configure checking for inttypes.h... yes
626:info:configure checking for stdint.h... yes
627:info:configure checking for unistd.h... yes
628:info:configure checking for dlfcn.h... yes
629:info:configure checking for objdir... .libs
630:info:configure checking if clang supports -fno-rtti -fno-exceptions... yes
631:info:configure checking for clang option to produce PIC... -fno-common -DPIC
632:info:configure checking if clang PIC flag -fno-common -DPIC works... yes
633:info:configure checking if clang static flag -static works... no
634:info:configure checking if clang supports -c -o file.o... yes
635:info:configure checking if clang supports -c -o file.o... (cached) yes
636:info:configure checking whether the clang linker (/usr/bin/ld) supports shared libraries... yes
637:info:configure checking dynamic linker characteristics... darwin12.4.0 dyld
638:info:configure checking how to hardcode library paths into programs... immediate
639:info:configure checking whether stripping libraries is possible... yes
640:info:configure checking if libtool supports shared libraries... yes
641:info:configure checking whether to build shared libraries... yes
642:info:configure checking whether to build static libraries... yes
643:info:configure configure: finding other utilities
644:info:configure checking for doxygen... no
645:info:configure configure: WARNING: Doxygen not found - documentation will not be built
646:info:configure checking for special C compiler options needed for large files... no
647:info:configure checking for _FILE_OFFSET_BITS value needed for large files... no
648:info:configure configure: displaying some results
649:info:configure checking CPPFLAGS... -I/opt/local/include -mtune=native -DNDEBUG
650:info:configure checking CC CFLAGS... clang -pipe -O2 -mtune=native -fno-common -arch x86_64
651:info:configure checking type clang... clang is hashed (/usr/bin/clang)
652:info:configure checking CXX... clang++
653:info:configure checking CXXFLAGS... -pipe -O2 -mtune=native -arch x86_64
654:info:configure checking type clang++... clang++ is /usr/bin/clang++
655:info:configure checking FC... gfortran
656:info:configure checking FFLAGS... -pipe -O2 -mtune=native -m64
657:info:configure checking type gfortran... gfortran is /opt/local/bin/gfortran
658:info:configure checking F90... gfortran
659:info:configure checking FCFLAGS... -pipe -O2 -mtune=native -m64
660:info:configure checking type gfortran... gfortran is /opt/local/bin/gfortran
661:info:configure checking AR... ar
662:info:configure checking AR_FLAGS... cru
663:info:configure checking type ar... ar is hashed (/opt/local/bin/ar)
664:info:configure checking NM... /opt/local/bin/nm
665:info:configure checking NMFLAGS...
666:info:configure configure: checking types, headers, and functions
667:info:configure checking for stdlib.h... (cached) yes
668:info:configure checking for sys/types.h... (cached) yes
669:info:configure checking sys/param.h usability... yes
670:info:configure checking sys/param.h presence... yes
671:info:configure checking for sys/param.h... yes
672:info:configure checking for dirent.h that defines DIR... yes
673:info:configure checking for library containing opendir... none required
674:info:configure checking for ANSI C header files... (cached) yes
675:info:configure checking for sys/wait.h that is POSIX.1 compatible... yes
676:info:configure checking whether time.h and sys/time.h may both be included... yes
677:info:configure checking locale.h usability... yes
678:info:configure checking locale.h presence... yes
679:info:configure checking for locale.h... yes
680:info:configure checking stdio.h usability... yes
681:info:configure checking stdio.h presence... yes
682:info:configure checking for stdio.h... yes
683:info:configure checking stdarg.h usability... yes
684:info:configure checking stdarg.h presence... yes
685:info:configure checking for stdarg.h... yes
686:info:configure checking errno.h usability... yes
687:info:configure checking errno.h presence... yes
688:info:configure checking for errno.h... yes
689:info:configure checking ctype.h usability... yes
690:info:configure checking ctype.h presence... yes
691:info:configure checking for ctype.h... yes
692:info:configure checking fcntl.h usability... yes
693:info:configure checking fcntl.h presence... yes
694:info:configure checking for fcntl.h... yes
695:info:configure checking malloc.h usability... no
696:info:configure checking malloc.h presence... no
697:info:configure checking for malloc.h... no
698:info:configure checking for stdlib.h... (cached) yes
699:info:configure checking for string.h... (cached) yes
700:info:configure checking for strings.h... (cached) yes
701:info:configure checking for unistd.h... (cached) yes
702:info:configure checking for sys/stat.h... (cached) yes
703:info:configure checking getopt.h usability... yes
704:info:configure checking getopt.h presence... yes
705:info:configure checking for getopt.h... yes
706:info:configure checking sys/time.h usability... yes
707:info:configure checking sys/time.h presence... yes
708:info:configure checking for sys/time.h... yes
709:info:configure checking for vprintf... yes
710:info:configure checking for _doprnt... no
711:info:configure checking sys/resource.h usability... yes
712:info:configure checking sys/resource.h presence... yes
713:info:configure checking for sys/resource.h... yes
714:info:configure checking for stdbool.h that conforms to C99... yes
715:info:configure checking for _Bool... yes
716:info:configure checking for strlcat... yes
717:info:configure checking for strerror... yes
718:info:configure checking for snprintf... yes
719:info:configure checking for strchr... yes
720:info:configure checking for strrchr... yes
721:info:configure checking for strcat... yes
722:info:configure checking for strcpy... yes
723:info:configure checking for strdup... yes
724:info:configure checking for strcasecmp... yes
725:info:configure checking for strtod... yes
726:info:configure checking for strtoll... yes
727:info:configure checking for strtoull... yes
728:info:configure checking for strstr... yes
729:info:configure checking for mkstemp... yes
730:info:configure checking for rand... yes
731:info:configure checking for getrlimit... yes
732:info:configure checking for gettimeofday... yes
733:info:configure checking for fsync... yes
734:info:configure checking for MPI_Comm_f2c... no
735:info:configure checking whether in-memory files are enabled... yes
736:info:configure checking for memmove... yes
737:info:configure checking for getpagesize... yes
738:info:configure checking for sysconf... yes
739:info:configure checking whether mmap is enabled for in-memory files... no
740:info:configure checking for stdlib.h... (cached) yes
741:info:configure checking for unistd.h... (cached) yes
742:info:configure checking for sys/param.h... (cached) yes
743:info:configure checking for getpagesize... (cached) yes
744:info:configure checking for working mmap... yes
745:info:configure checking for mremap... no
746:info:configure mmap function or mremap function is not available: disabling mmap
747:info:configure checking for size_t... yes
748:info:configure checking for working alloca.h... yes
749:info:configure checking for alloca... yes
750:info:configure checking whether isnan is declared... yes
751:info:configure checking whether isinf is declared... yes
752:info:configure checking whether isfinite is declared... yes
753:info:configure checking whether signbit is declared... yes
754:info:configure checking for struct stat.st_blksize... yes
755:info:configure checking for IEEE floating point format... yes
756:info:configure checking for size_t... (cached) yes
757:info:configure checking for off_t... yes
758:info:configure checking for ssize_t... yes
759:info:configure checking for ptrdiff_t... yes
760:info:configure checking for uchar... no
761:info:configure checking for longlong... no
762:info:configure checking whether char is unsigned... no
763:info:configure checking whether byte ordering is bigendian... no
764:info:configure checking size of short... 2
765:info:configure checking size of int... 4
766:info:configure checking size of long... 8
767:info:configure checking size of long long... 8
768:info:configure checking size of float... 4
769:info:configure checking size of double... 8
770:info:configure checking size of off_t... 8
771:info:configure checking size of size_t... 8
772:info:configure checking for library containing deflate... -lz
773:info:configure checking for floor in -lm... yes
774:info:configure checking for library containing SZ_Compress... no
775:info:configure checking for library containing H5Fflush... -lhdf5
776:info:configure checking for library containing H5DSis_scale... -lhdf5_hl
777:info:configure checking hdf5.h usability... no
778:info:configure checking hdf5.h presence... no
779:info:configure checking for hdf5.h... no
780:info:configure configure: error: NetCDF-4 requires HDF5, but hdf5.h cannot be found.
781:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_scienceports_science_netcdf/netcdf/work/netcdf-4.2.1.1" && ./configure --prefix=/opt/local --disable-doxygen --enable-netcdf-4
782:info:configure Exit code: 1
783:error:configure org.macports.configure for port netcdf returned: configure failure: command execution failed
784:debug:configure Error code: NONE
785:debug:configure Backtrace: configure failure: command execution failed
786    while executing
787"$procedure $targetname"
788:info:configure Warning: targets not executed for netcdf: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install
789:notice:configure Please see the log file for port netcdf for details:
790    /opt/local/var/macports/logs/_opt_scienceports_science_netcdf/netcdf/main.log