Ticket #41293: log_file_error_build_rasmol.log

File log_file_error_build_rasmol.log, 39.5 KB (added by guillem.portella@…, 7 years ago)

Log file from build attempt

Line 
1version:1
2:debug:main epoch: in tree: 0 installed: 0
3:debug:main imake 1.0.5_1 exists in the ports tree
4:debug:main imake 1.0.5_1  is the latest installed
5:debug:main imake 1.0.5_1  is active
6:debug:main Merging existing variants '' into variants
7:debug:main new fully merged portvariants:
8:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/imake
9:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
10:debug:main adding the default universal variant
11:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
12:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
13:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
14:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
15:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
16:debug:main No need to upgrade! imake 1.0.5_1 >= imake 1.0.5_1
17:debug:main epoch: in tree: 0 installed: 0
18:debug:main xorg-cf-files 1.0.4_2 exists in the ports tree
19:debug:main xorg-cf-files 1.0.4_2  is the latest installed
20:debug:main xorg-cf-files 1.0.4_2  is active
21:debug:main Merging existing variants '' into variants
22:debug:main new fully merged portvariants:
23:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-cf-files
24:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
25:debug:main only one arch supported, so not adding the default universal variant
26:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
27:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
28:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
29:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
30:debug:main No need to upgrade! xorg-cf-files 1.0.4_2 >= xorg-cf-files 1.0.4_2
31:debug:main epoch: in tree: 0 installed: 0
32:debug:main perl5 5.12.4_0 exists in the ports tree
33:debug:main perl5 5.12.4_0 +perl5_12 is the latest installed
34:debug:main perl5 5.12.4_0 +perl5_12 is active
35:debug:main Merging existing variants '+perl5_12' into variants
36:debug:main new fully merged portvariants: perl5_12 +
37:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5
38:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
39:debug:main universal_variant is false, so not adding the default universal variant
40:debug:main Executing variant perl5_12 provides perl5_12
41:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
42:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
43:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
44:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
45:debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0
46:debug:main epoch: in tree: 0 installed: 0
47:debug:main perl5.12 5.12.4_2 exists in the ports tree
48:debug:main perl5.12 5.12.4_2  is the latest installed
49:debug:main perl5.12 5.12.4_2  is active
50:debug:main Merging existing variants '' into variants
51:debug:main new fully merged portvariants:
52:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.12
53:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
54:debug:main adding the default universal variant
55:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
56:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
57:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
58:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
59:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
60:debug:main No need to upgrade! perl5.12 5.12.4_2 >= perl5.12 5.12.4_2
61:debug:main epoch: in tree: 0 installed: 0
62:debug:main gdbm 1.10_2 exists in the ports tree
63:debug:main gdbm 1.10_2  is the latest installed
64:debug:main gdbm 1.10_2  is active
65:debug:main Merging existing variants '' into variants
66:debug:main new fully merged portvariants:
67:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm
68:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
69:debug:main adding the default universal variant
70:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
71:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
72:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
73:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
74:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
75:debug:main No need to upgrade! gdbm 1.10_2 >= gdbm 1.10_2
76:debug:main epoch: in tree: 0 installed: 0
77:debug:main gettext 0.18.3.1_1 exists in the ports tree
78:debug:main gettext 0.18.3.1_1  is the latest installed
79:debug:main gettext 0.18.3.1_1  is active
80:debug:main Merging existing variants '' into variants
81:debug:main new fully merged portvariants:
82:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
83:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
84:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
85:debug:main compiler clang 500.2.79 not blacklisted because does not match {clang < 211.10.1}
86:debug:main universal variant already exists, so not adding the default one
87:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
88:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
89:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
90:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
91:debug:main No need to upgrade! gettext 0.18.3.1_1 >= gettext 0.18.3.1_1
92:debug:main epoch: in tree: 0 installed: 0
93:debug:main expat 2.1.0_0 exists in the ports tree
94:debug:main expat 2.1.0_0  is the latest installed
95:debug:main expat 2.1.0_0  is active
96:debug:main Merging existing variants '' into variants
97:debug:main new fully merged portvariants:
98:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
99:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
100:debug:main adding the default universal variant
101:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
102:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
103:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
104:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
105:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
106:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
107:debug:main epoch: in tree: 0 installed: 0
108:debug:main libiconv 1.14_0 exists in the ports tree
109:debug:main libiconv 1.14_0  is the latest installed
110:debug:main libiconv 1.14_0  is active
111:debug:main Merging existing variants '' into variants
112:debug:main new fully merged portvariants:
113:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
114:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
115:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
116:debug:main universal variant already exists, so not adding the default one
117:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
118:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
119:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
120:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
121:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
122:debug:main epoch: in tree: 0 installed: 0
123:debug:main ncurses 5.9_2 exists in the ports tree
124:debug:main ncurses 5.9_2  is the latest installed
125:debug:main ncurses 5.9_2  is active
126:debug:main Merging existing variants '' into variants
127:debug:main new fully merged portvariants:
128:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
129:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
130:debug:main adding the default universal variant
131:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
132:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
133:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
134:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
135:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
136:debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
137:debug:main epoch: in tree: 0 installed: 0
138:debug:main xorg-libXi 1.7.2_0 exists in the ports tree
139:debug:main xorg-libXi 1.7.2_0  is the latest installed
140:debug:main xorg-libXi 1.7.2_0  is active
141:debug:main Merging existing variants '' into variants
142:debug:main new fully merged portvariants:
143:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXi
144:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
145:debug:main adding the default universal variant
146:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
147:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
148:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
149:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
150:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
151:debug:main No need to upgrade! xorg-libXi 1.7.2_0 >= xorg-libXi 1.7.2_0
152:debug:main epoch: in tree: 0 installed: 0
153:debug:main xorg-libXext 1.3.2_0 exists in the ports tree
154:debug:main xorg-libXext 1.3.2_0  is the latest installed
155:debug:main xorg-libXext 1.3.2_0  is active
156:debug:main Merging existing variants '' into variants
157:debug:main new fully merged portvariants:
158:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXext
159:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
160:debug:main adding the default universal variant
161:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
162:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
163:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
164:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
165:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
166:debug:main No need to upgrade! xorg-libXext 1.3.2_0 >= xorg-libXext 1.3.2_0
167:debug:main epoch: in tree: 0 installed: 0
168:debug:main xorg-libX11 1.6.2_0 exists in the ports tree
169:debug:main xorg-libX11 1.6.2_0  is the latest installed
170:debug:main xorg-libX11 1.6.2_0  is active
171:debug:main Merging existing variants '' into variants
172:debug:main new fully merged portvariants:
173:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libX11
174:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
175:debug:main adding the default universal variant
176:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
177:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
178:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
179:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
180:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
181:debug:main No need to upgrade! xorg-libX11 1.6.2_0 >= xorg-libX11 1.6.2_0
182:debug:main epoch: in tree: 0 installed: 0
183:debug:main xorg-libXdmcp 1.1.1_0 exists in the ports tree
184:debug:main xorg-libXdmcp 1.1.1_0  is the latest installed
185:debug:main xorg-libXdmcp 1.1.1_0  is active
186:debug:main Merging existing variants '' into variants
187:debug:main new fully merged portvariants:
188:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdmcp
189:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
190:debug:main adding the default universal variant
191:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
192:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
193:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
194:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
195:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
196:debug:main No need to upgrade! xorg-libXdmcp 1.1.1_0 >= xorg-libXdmcp 1.1.1_0
197:debug:main epoch: in tree: 0 installed: 0
198:debug:main xorg-libXau 1.0.8_0 exists in the ports tree
199:debug:main xorg-libXau 1.0.8_0  is the latest installed
200:debug:main xorg-libXau 1.0.8_0  is active
201:debug:main Merging existing variants '' into variants
202:debug:main new fully merged portvariants:
203:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXau
204:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
205:debug:main adding the default universal variant
206:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
207:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
208:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
209:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
210:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
211:debug:main No need to upgrade! xorg-libXau 1.0.8_0 >= xorg-libXau 1.0.8_0
212:debug:main epoch: in tree: 0 installed: 0
213:debug:main xorg-xproto 7.0.24_0 exists in the ports tree
214:debug:main xorg-xproto 7.0.24_0  is the latest installed
215:debug:main xorg-xproto 7.0.24_0  is active
216:debug:main Merging existing variants '' into variants
217:debug:main new fully merged portvariants:
218:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xproto
219:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
220:debug:main only one arch supported, so not adding the default universal variant
221:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
222:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
223:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
224:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
225:debug:main No need to upgrade! xorg-xproto 7.0.24_0 >= xorg-xproto 7.0.24_0
226:debug:main epoch: in tree: 0 installed: 0
227:debug:main xorg-libxcb 1.9.1_0 exists in the ports tree
228:debug:main xorg-libxcb 1.9.1_0 +python27 is the latest installed
229:debug:main xorg-libxcb 1.9.1_0 +python27 is active
230:debug:main Merging existing variants '+python27' into variants
231:debug:main new fully merged portvariants: python27 +
232:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libxcb
233:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
234:debug:main adding the default universal variant
235:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
236:debug:main Executing variant python27 provides python27
237:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
238:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
239:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
240:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
241:debug:main No need to upgrade! xorg-libxcb 1.9.1_0 >= xorg-libxcb 1.9.1_0
242:debug:main epoch: in tree: 0 installed: 0
243:debug:main xorg-xcb-proto 1.8_0 exists in the ports tree
244:debug:main xorg-xcb-proto 1.8_0 +python27 is the latest installed
245:debug:main xorg-xcb-proto 1.8_0 +python27 is active
246:debug:main Merging existing variants '+python27' into variants
247:debug:main new fully merged portvariants: python27 +
248:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xcb-proto
249:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
250:debug:main only one arch supported, so not adding the default universal variant
251:debug:main Executing variant python27 provides python27
252:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
253:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
254:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
255:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
256:debug:main No need to upgrade! xorg-xcb-proto 1.8_0 >= xorg-xcb-proto 1.8_0
257:debug:main epoch: in tree: 0 installed: 0
258:debug:main libxml2 2.9.1_0 exists in the ports tree
259:debug:main libxml2 2.9.1_0  is the latest installed
260:debug:main libxml2 2.9.1_0  is active
261:debug:main Merging existing variants '' into variants
262:debug:main new fully merged portvariants:
263:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2
264:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
265:debug:main adding the default universal variant
266:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
267:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
268:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
269:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
270:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
271:debug:main No need to upgrade! libxml2 2.9.1_0 >= libxml2 2.9.1_0
272:debug:main epoch: in tree: 0 installed: 0
273:debug:main zlib 1.2.8_0 exists in the ports tree
274:debug:main zlib 1.2.8_0  is the latest installed
275:debug:main zlib 1.2.8_0  is active
276:debug:main Merging existing variants '' into variants
277:debug:main new fully merged portvariants:
278:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
279:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
280:debug:main adding the default universal variant
281:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
282:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
283:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
284:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
285:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
286:debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
287:debug:main epoch: in tree: 0 installed: 0
288:debug:main xz 5.0.5_0 exists in the ports tree
289:debug:main xz 5.0.5_0  is the latest installed
290:debug:main xz 5.0.5_0  is active
291:debug:main Merging existing variants '' into variants
292:debug:main new fully merged portvariants:
293:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz
294:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
295:debug:main adding the default universal variant
296:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
297:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
298:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
299:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
300:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
301:debug:main No need to upgrade! xz 5.0.5_0 >= xz 5.0.5_0
302:debug:main epoch: in tree: 2 installed: 2
303:debug:main python27 2.7.5_1 exists in the ports tree
304:debug:main python27 2.7.5_1  is the latest installed
305:debug:main python27 2.7.5_1  is active
306:debug:main Merging existing variants '' into variants
307:debug:main new fully merged portvariants:
308:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
309:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
310:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
311:debug:main universal variant already exists, so not adding the default one
312:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
313:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
314:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
315:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
316:debug:main No need to upgrade! python27 2.7.5_1 >= python27 2.7.5_1
317:debug:main epoch: in tree: 1 installed: 1
318:debug:main openssl 1.0.1e_1 exists in the ports tree
319:debug:main openssl 1.0.1e_1  is the latest installed
320:debug:main openssl 1.0.1e_1  is active
321:debug:main Merging existing variants '' into variants
322:debug:main new fully merged portvariants:
323:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
324:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
325:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
326:debug:main universal variant already exists, so not adding the default one
327:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
328:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
329:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
330:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
331:debug:main No need to upgrade! openssl 1.0.1e_1 >= openssl 1.0.1e_1
332:debug:main epoch: in tree: 0 installed: 0
333:debug:main sqlite3 3.8.0.2_0 exists in the ports tree
334:debug:main sqlite3 3.8.0.2_0  is the latest installed
335:debug:main sqlite3 3.8.0.2_0  is active
336:debug:main Merging existing variants '' into variants
337:debug:main new fully merged portvariants:
338:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
339:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
340:debug:main adding the default universal variant
341:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
342:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
343:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
344:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
345:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
346:debug:main No need to upgrade! sqlite3 3.8.0.2_0 >= sqlite3 3.8.0.2_0
347:debug:main epoch: in tree: 20090923 installed: 20090923
348:debug:main libedit 20121213-3.0_0 exists in the ports tree
349:debug:main libedit 20121213-3.0_0  is the latest installed
350:debug:main libedit 20121213-3.0_0  is active
351:debug:main Merging existing variants '' into variants
352:debug:main new fully merged portvariants:
353:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
354:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
355:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
356:debug:main universal variant already exists, so not adding the default one
357:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
358:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
359:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
360:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
361:debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0
362:debug:main epoch: in tree: 0 installed: 0
363:debug:main db46 4.6.21_8 exists in the ports tree
364:debug:main db46 4.6.21_8  is the latest installed
365:debug:main db46 4.6.21_8  is active
366:debug:main Merging existing variants '' into variants
367:debug:main new fully merged portvariants:
368:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46
369:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
370:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
371:debug:main universal variant already exists, so not adding the default one
372:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
373:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
374:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
375:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
376:debug:main No need to upgrade! db46 4.6.21_8 >= db46 4.6.21_8
377:debug:main epoch: in tree: 0 installed: 0
378:debug:main db_select 0.1_2 exists in the ports tree
379:debug:main db_select 0.1_2  is the latest installed
380:debug:main db_select 0.1_2  is active
381:debug:main Merging existing variants '' into variants
382:debug:main new fully merged portvariants:
383:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/db_select
384:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
385:debug:main universal_variant is false, so not adding the default universal variant
386:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
387:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
388:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
389:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
390:debug:main No need to upgrade! db_select 0.1_2 >= db_select 0.1_2
391:debug:main epoch: in tree: 0 installed: 0
392:debug:main bzip2 1.0.6_0 exists in the ports tree
393:debug:main bzip2 1.0.6_0  is the latest installed
394:debug:main bzip2 1.0.6_0  is active
395:debug:main Merging existing variants '' into variants
396:debug:main new fully merged portvariants:
397:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
398:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
399:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
400:debug:main universal variant already exists, so not adding the default one
401:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
402:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
403:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
404:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
405:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
406:debug:main epoch: in tree: 0 installed: 0
407:debug:main python_select 0.3_3 exists in the ports tree
408:debug:main python_select 0.3_3  is the latest installed
409:debug:main python_select 0.3_3  is active
410:debug:main Merging existing variants '' into variants
411:debug:main new fully merged portvariants:
412:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
413:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
414:debug:main universal_variant is false, so not adding the default universal variant
415:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
416:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
417:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
418:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
419:debug:main No need to upgrade! python_select 0.3_3 >= python_select 0.3_3
420:debug:main epoch: in tree: 0 installed: 0
421:debug:main xorg-libpthread-stubs 0.3_0 exists in the ports tree
422:debug:main xorg-libpthread-stubs 0.3_0  is the latest installed
423:debug:main xorg-libpthread-stubs 0.3_0  is active
424:debug:main Merging existing variants '' into variants
425:debug:main new fully merged portvariants:
426:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libpthread-stubs
427:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
428:debug:main only one arch supported, so not adding the default universal variant
429:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
430:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
431:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
432:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
433:debug:main No need to upgrade! xorg-libpthread-stubs 0.3_0 >= xorg-libpthread-stubs 0.3_0
434:debug:main epoch: in tree: 0 installed: 0
435:debug:main xorg-kbproto 1.0.6_0 exists in the ports tree
436:debug:main xorg-kbproto 1.0.6_0  is the latest installed
437:debug:main xorg-kbproto 1.0.6_0  is active
438:debug:main Merging existing variants '' into variants
439:debug:main new fully merged portvariants:
440:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-kbproto
441:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
442:debug:main only one arch supported, so not adding the default universal variant
443:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
444:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
445:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
446:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
447:debug:main No need to upgrade! xorg-kbproto 1.0.6_0 >= xorg-kbproto 1.0.6_0
448:debug:main epoch: in tree: 0 installed: 0
449:debug:main xorg-xextproto 7.2.1_0 exists in the ports tree
450:debug:main xorg-xextproto 7.2.1_0  is the latest installed
451:debug:main xorg-xextproto 7.2.1_0  is active
452:debug:main Merging existing variants '' into variants
453:debug:main new fully merged portvariants:
454:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xextproto
455:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
456:debug:main only one arch supported, so not adding the default universal variant
457:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
458:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
459:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
460:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
461:debug:main No need to upgrade! xorg-xextproto 7.2.1_0 >= xorg-xextproto 7.2.1_0
462:debug:main epoch: in tree: 0 installed: 0
463:debug:main xorg-libXfixes 5.0.1_0 exists in the ports tree
464:debug:main xorg-libXfixes 5.0.1_0  is the latest installed
465:debug:main xorg-libXfixes 5.0.1_0  is active
466:debug:main Merging existing variants '' into variants
467:debug:main new fully merged portvariants:
468:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXfixes
469:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
470:debug:main adding the default universal variant
471:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
472:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
473:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
474:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
475:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
476:debug:main No need to upgrade! xorg-libXfixes 5.0.1_0 >= xorg-libXfixes 5.0.1_0
477:debug:main epoch: in tree: 0 installed: 0
478:debug:main xorg-fixesproto 5.0_0 exists in the ports tree
479:debug:main xorg-fixesproto 5.0_0  is the latest installed
480:debug:main xorg-fixesproto 5.0_0  is active
481:debug:main Merging existing variants '' into variants
482:debug:main new fully merged portvariants:
483:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-fixesproto
484:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
485:debug:main only one arch supported, so not adding the default universal variant
486:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
487:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
488:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
489:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
490:debug:main No need to upgrade! xorg-fixesproto 5.0_0 >= xorg-fixesproto 5.0_0
491:debug:main epoch: in tree: 0 installed: 0
492:debug:main xorg-inputproto 2.3_0 exists in the ports tree
493:debug:main xorg-inputproto 2.3_0  is the latest installed
494:debug:main xorg-inputproto 2.3_0  is active
495:debug:main Merging existing variants '' into variants
496:debug:main new fully merged portvariants:
497:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-inputproto
498:debug:main OS darwin/13.0.0 (Mac OS X 10.9) arch i386
499:debug:main only one arch supported, so not adding the default universal variant
500:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
501:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
502:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
503:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
504:debug:main No need to upgrade! xorg-inputproto 2.3_0 >= xorg-inputproto 2.3_0
505:msg:main --->  Computing dependencies for rasmol:info:main .:debug:main rasmol has no conflicts
506:debug:main Searching for dependency: imake
507:debug:main Found Dependency: receipt exists for imake
508:debug:main Searching for dependency: xorg-libXi
509:debug:main Found Dependency: receipt exists for xorg-libXi
510:msg:main
511:debug:main Executing org.macports.main (rasmol)
512:debug:main changing euid/egid - current euid: 0 - current egid: 0
513:debug:main egid changed to: 501
514:debug:main euid changed to: 502
515:debug:main Skipping completed org.macports.archivefetch (rasmol)
516:debug:main Privilege de-escalation not attempted as not running as root.
517:debug:main Skipping completed org.macports.fetch (rasmol)
518:debug:main Privilege de-escalation not attempted as not running as root.
519:debug:main Skipping completed org.macports.checksum (rasmol)
520:debug:main Privilege de-escalation not attempted as not running as root.
521:debug:main Skipping completed org.macports.extract (rasmol)
522:debug:main Privilege de-escalation not attempted as not running as root.
523:debug:main Skipping completed org.macports.patch (rasmol)
524:debug:main Privilege de-escalation not attempted as not running as root.
525:debug:configure configure phase started at Sun Nov 10 20:02:19 GMT 2013
526:notice:configure --->  Configuring rasmol
527:debug:configure Using compiler 'Xcode Clang'
528:debug:configure Executing org.macports.configure (rasmol)
529:debug:configure Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_rasmol/rasmol/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.9' IMAKECPP='/usr/bin/cpp'
530:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_rasmol/rasmol/work/RasMol_2.7.4.2_10Apr08/src" && xmkmf'
531:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_rasmol/rasmol/work/RasMol_2.7.4.2_10Apr08/src" && xmkmf
532:info:configure mv -f Makefile Makefile.bak
533:info:configure imake -DUseInstalled -I/opt/local/lib/X11/config
534:info:configure In file included from Imakefile.c:15:
535:info:configure /opt/local/lib/X11/config/Imake.tmpl:2144:10: fatal error: ' X11 .rules' file not found
536:info:configure #include ProjectRulesFile
537:info:configure          ^
538:info:configure /opt/local/lib/X11/config/Imake.tmpl:2142:35: note: expanded from macro 'ProjectRulesFile'
539:info:configure # define ProjectRulesFile       Concat3(<,TopLevelProject,.rules>)
540:info:configure                                         ^
541:info:configure /opt/local/lib/X11/config/Imake.rules:256:23: note: expanded from macro 'Concat3'
542:info:configure #define Concat3(a,b,c)a/**/b/**/c
543:info:configure                       ^
544:info:configure 1 error generated.
545:info:configure imake: Exit code 1.
546:info:configure   Stop.
547:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_rasmol/rasmol/work/RasMol_2.7.4.2_10Apr08/src" && xmkmf
548:info:configure Exit code: 1
549:error:configure org.macports.configure for port rasmol returned: xmkmf failure: command execution failed
550:debug:configure Error code: NONE
551:debug:configure Backtrace: xmkmf failure: command execution failed
552    while executing
553"$procedure $targetname"
554:info:configure Warning: targets not executed for rasmol: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install
555:notice:configure Please see the log file for port rasmol for details:
556    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_rasmol/rasmol/main.log