| 1 | version:1 |
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| 2 | :msg:main ---> Computing dependencies for R:info:main .:debug:main R has no conflicts |
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| 3 | :debug:main Searching for dependency: pkgconfig |
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| 4 | :debug:main Found Dependency: receipt exists for pkgconfig |
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| 5 | :debug:main Searching for dependency: gcc48 |
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| 6 | :debug:main Found Dependency: receipt exists for gcc48 |
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| 7 | :debug:main Searching for dependency: readline |
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| 8 | :debug:main Found Dependency: receipt exists for readline |
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| 9 | :debug:main Searching for dependency: icu |
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| 10 | :debug:main Found Dependency: receipt exists for icu |
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| 11 | :debug:main Searching for dependency: libiconv |
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| 12 | :debug:main Found Dependency: receipt exists for libiconv |
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| 13 | :debug:main Searching for dependency: libgcc |
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| 14 | :debug:main Found Dependency: receipt exists for libgcc |
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| 15 | :debug:main Searching for dependency: xorg-libsm |
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| 16 | :debug:main Found Dependency: receipt exists for xorg-libsm |
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| 17 | :debug:main Searching for dependency: xorg-libice |
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| 18 | :debug:main Found Dependency: receipt exists for xorg-libice |
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| 19 | :debug:main Searching for dependency: xorg-libX11 |
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| 20 | :debug:main Found Dependency: receipt exists for xorg-libX11 |
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| 21 | :debug:main Searching for dependency: xorg-libXt |
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| 22 | :debug:main Found Dependency: receipt exists for xorg-libXt |
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| 23 | :debug:main Searching for dependency: tiff |
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| 24 | :debug:main Found Dependency: receipt exists for tiff |
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| 25 | :debug:main Searching for dependency: jpeg |
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| 26 | :debug:main Found Dependency: receipt exists for jpeg |
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| 27 | :debug:main Searching for dependency: libpng |
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| 28 | :debug:main Found Dependency: receipt exists for libpng |
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| 29 | :debug:main Searching for dependency: zlib |
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| 30 | :debug:main Found Dependency: receipt exists for zlib |
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| 31 | :debug:main Searching for dependency: cairo |
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| 32 | :debug:main Found Dependency: receipt exists for cairo |
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| 33 | :debug:main Searching for dependency: pango |
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| 34 | :debug:main Found Dependency: receipt exists for pango |
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| 35 | :debug:main Searching for dependency: glib2 |
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| 36 | :debug:main Found Dependency: receipt exists for glib2 |
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| 37 | :debug:main Searching for dependency: freetype |
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| 38 | :debug:main Found Dependency: receipt exists for freetype |
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| 39 | :debug:main Searching for dependency: fontconfig |
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| 40 | :debug:main Found Dependency: receipt exists for fontconfig |
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| 41 | :debug:main Searching for dependency: gettext |
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| 42 | :debug:main Found Dependency: receipt exists for gettext |
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| 43 | :msg:main |
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| 44 | :debug:main Executing org.macports.main (R) |
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| 45 | :debug:main changing euid/egid - current euid: 0 - current egid: 0 |
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| 46 | :debug:main egid changed to: 501 |
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| 47 | :debug:main euid changed to: 502 |
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| 48 | :debug:archivefetch archivefetch phase started at Sat Jun 28 20:29:42 CEST 2014 |
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| 49 | :msg:archivefetch ---> Fetching archive for R |
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| 50 | :warn:archivefetch Your DNS servers incorrectly claim to know the address of nonexistent hosts. This may cause checksum mismatches for some ports. See this page for more information: <https://trac.macports.org/wiki/MisbehavingServers> |
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| 51 | :debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0 |
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| 52 | :debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: readline icu libiconv libgcc xorg-libsm xorg-libice xorg-libX11 xorg-libXt tiff jpeg libpng zlib cairo pango glib2 freetype fontconfig gettext |
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| 53 | :debug:archivefetch Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo' |
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| 54 | :debug:archivefetch cairo is installed with the following variants: +universal+x11 |
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| 55 | :debug:archivefetch required: x11, forbidden: |
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| 56 | :debug:archivefetch accepted |
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| 57 | :debug:archivefetch Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango' |
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| 58 | :debug:archivefetch pango is installed with the following variants: +universal+x11 |
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| 59 | :debug:archivefetch required: x11, forbidden: |
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| 60 | :debug:archivefetch accepted |
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| 61 | :debug:archivefetch Executing org.macports.archivefetch (R) |
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| 62 | :debug:archivefetch euid/egid changed to: 0/0 |
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| 63 | :debug:archivefetch chowned /opt/local/var/macports/incoming to macports |
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| 64 | :debug:archivefetch euid/egid changed to: 502/501 |
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| 65 | :info:archivefetch ---> R-3.1.0_1+accelerate+cairo+gfortran48+recommended+x11.darwin_13.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified |
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| 66 | :msg:archivefetch ---> Attempting to fetch R-3.1.0_1+accelerate+cairo+gfortran48+recommended+x11.darwin_13.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/R |
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| 67 | :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found |
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| 68 | :msg:archivefetch ---> Attempting to fetch R-3.1.0_1+accelerate+cairo+gfortran48+recommended+x11.darwin_13.x86_64.tbz2 from http://lil.fr.packages.macports.org/R |
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| 69 | :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found |
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| 70 | :msg:archivefetch ---> Attempting to fetch R-3.1.0_1+accelerate+cairo+gfortran48+recommended+x11.darwin_13.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/R |
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| 71 | :debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found |
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| 72 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
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| 73 | :debug:fetch fetch phase started at Sat Jun 28 20:29:43 CEST 2014 |
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| 74 | :notice:fetch ---> Fetching distfiles for R |
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| 75 | :debug:fetch Can't run fetch on this port without elevated privileges. Escalating privileges back to root. |
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| 76 | :debug:fetch euid changed to: 0. egid changed to: 0. |
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| 77 | :debug:fetch changing euid/egid - current euid: 0 - current egid: 0 |
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| 78 | :debug:fetch egid changed to: 501 |
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| 79 | :debug:fetch euid changed to: 502 |
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| 80 | :debug:fetch Executing org.macports.fetch (R) |
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| 81 | :info:fetch ---> R-3.1.0.tar.gz doesn't seem to exist in /opt/local/var/macports/distfiles/R |
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| 82 | :notice:fetch ---> Attempting to fetch R-3.1.0.tar.gz from http://nue.de.distfiles.macports.org/macports/distfiles/R |
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| 83 | :debug:fetch Privilege de-escalation not attempted as not running as root. |
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| 84 | :debug:checksum checksum phase started at Sat Jun 28 20:30:49 CEST 2014 |
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| 85 | :notice:checksum ---> Verifying checksums for R |
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| 86 | :debug:checksum Executing org.macports.checksum (R) |
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| 87 | :info:checksum ---> Checksumming R-3.1.0.tar.gz |
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| 88 | :debug:checksum Calculated (rmd160) is 15d6c762baf36d4e2680599b5e976d0c068b7dbd |
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| 89 | :debug:checksum Correct (rmd160) checksum for R-3.1.0.tar.gz |
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| 90 | :debug:checksum Calculated (sha256) is 8a680390f84c58c01dcdefd682eaa0e90389f09e6d2f2e090c71af40065f5fe2 |
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| 91 | :debug:checksum Correct (sha256) checksum for R-3.1.0.tar.gz |
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| 92 | :debug:checksum Privilege de-escalation not attempted as not running as root. |
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| 93 | :debug:extract extract phase started at Sat Jun 28 20:30:49 CEST 2014 |
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| 94 | :notice:extract ---> Extracting R |
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| 95 | :debug:extract Executing org.macports.extract (R) |
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| 96 | :info:extract ---> Extracting R-3.1.0.tar.gz |
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| 97 | :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R/R-3.1.0.tar.gz' |
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| 98 | :debug:extract Environment: |
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| 99 | CC_PRINT_OPTIONS='YES' |
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| 100 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' |
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| 101 | CPATH='/opt/local/include' |
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| 102 | LIBRARY_PATH='/opt/local/lib' |
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| 103 | MACOSX_DEPLOYMENT_TARGET='10.9' |
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| 104 | :debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-3.1.0.tar.gz' | /usr/bin/tar -xf -' |
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| 105 | :debug:extract Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-3.1.0.tar.gz' | /usr/bin/tar -xf - |
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| 106 | :debug:extract euid/egid changed to: 0/0 |
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| 107 | :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work to macports |
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| 108 | :debug:extract euid/egid changed to: 502/501 |
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| 109 | :debug:extract Privilege de-escalation not attempted as not running as root. |
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| 110 | :debug:patch patch phase started at Sat Jun 28 20:30:52 CEST 2014 |
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| 111 | :debug:patch Executing org.macports.patch (R) |
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| 112 | :debug:patch Executing proc-post-org.macports.patch-patch-0 |
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| 113 | :info:patch ---> Patching Rscript.c: s|R_HOME|"/opt/local/Library/Frameworks/R.framework/Versions/3.1/Resources"| |
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| 114 | :debug:patch Executing reinplace: /usr/bin/sed s|R_HOME|\"/opt/local/Library/Frameworks/R.framework/Versions/3.1/Resources\"| < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0/src/unix/Rscript.c >@ file12 2>@stderr |
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| 115 | :debug:patch euid/egid changed to: 0/0 |
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| 116 | :debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0/src/unix/Rscript.c to macports |
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| 117 | :debug:patch euid/egid changed to: 502/501 |
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| 118 | :debug:patch euid/egid changed to: 0/0 |
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| 119 | :debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0/src/unix/Rscript.c |
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| 120 | :debug:patch euid/egid changed to: 502/501 |
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| 121 | :debug:patch Privilege de-escalation not attempted as not running as root. |
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| 122 | :debug:configure configure phase started at Sat Jun 28 20:30:52 CEST 2014 |
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| 123 | :notice:configure ---> Configuring R |
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| 124 | :debug:configure Using compiler 'Xcode Clang' |
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| 125 | :debug:configure Executing proc-pre-org.macports.configure-configure-0 |
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| 126 | :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv libgcc xorg-libsm xorg-libice xorg-libX11 xorg-libXt tiff jpeg libpng zlib cairo pango glib2 freetype fontconfig gettext pkgconfig gcc48 |
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| 127 | :debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo' |
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| 128 | :debug:configure cairo is installed with the following variants: +universal+x11 |
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| 129 | :debug:configure required: x11, forbidden: |
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| 130 | :debug:configure accepted |
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| 131 | :debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango' |
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| 132 | :debug:configure pango is installed with the following variants: +universal+x11 |
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| 133 | :debug:configure required: x11, forbidden: |
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| 134 | :debug:configure accepted |
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| 135 | :debug:configure Executing org.macports.configure (R) |
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| 136 | :debug:configure Environment: |
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| 137 | CC='/usr/bin/clang' |
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| 138 | CC_PRINT_OPTIONS='YES' |
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| 139 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS' |
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| 140 | CFLAGS='-pipe -Os -flax-vector-conversions -arch x86_64' |
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| 141 | CPATH='/opt/local/include' |
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| 142 | CPPFLAGS='-I/opt/local/include' |
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| 143 | CXX='/usr/bin/clang++' |
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| 144 | CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' |
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| 145 | F77='/opt/local/bin/gfortran-mp-4.8' |
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| 146 | F77FLAGS='-m64' |
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| 147 | F90='/opt/local/bin/gfortran-mp-4.8' |
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| 148 | F90FLAGS='-pipe -Os -m64' |
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| 149 | FC='/opt/local/bin/gfortran-mp-4.8' |
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| 150 | FCFLAGS='-pipe -Os -m64' |
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| 151 | FFLAGS='-pipe -Os' |
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| 152 | INSTALL='/usr/bin/install -c' |
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| 153 | LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64' |
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| 154 | LIBRARY_PATH='/opt/local/lib' |
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| 155 | MACOSX_DEPLOYMENT_TARGET='10.9' |
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| 156 | OBJC='/usr/bin/clang' |
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| 157 | OBJCFLAGS='-pipe -Os -arch x86_64' |
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| 158 | OBJCXX='/usr/bin/clang++' |
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| 159 | OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' |
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| 160 | :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0" && ./configure --prefix=/opt/local/Library/Frameworks --enable-R-framework --enable-R-shlib --enable-BLAS-shlib --disable-openmp --with-readline --with-aqua --without-tcltk --with-libpng --with-ICU --with-included-gettext --without-internal-tzcode --with-blas="-framework vecLib" --with-lapack="-framework vecLib" --with-x --with-jpeglib --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib --with-cairo --with-recommended-packages' |
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| 161 | :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0" && ./configure --prefix=/opt/local/Library/Frameworks --enable-R-framework --enable-R-shlib --enable-BLAS-shlib --disable-openmp --with-readline --with-aqua --without-tcltk --with-libpng --with-ICU --with-included-gettext --without-internal-tzcode --with-blas="-framework vecLib" --with-lapack="-framework vecLib" --with-x --with-jpeglib --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib --with-cairo --with-recommended-packages |
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| 162 | :info:configure checking build system type... x86_64-apple-darwin13.2.0 |
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| 163 | :info:configure checking host system type... x86_64-apple-darwin13.2.0 |
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| 164 | :info:configure loading site script './config.site' |
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| 165 | :info:configure loading build-specific script './config.site' |
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| 166 | :info:configure checking for pwd... /bin/pwd |
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| 167 | :info:configure checking whether builddir is srcdir... yes |
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| 168 | :info:configure checking for working aclocal... found |
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| 169 | :info:configure checking for working autoconf... found |
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| 170 | :info:configure checking for working automake... found |
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| 171 | :info:configure checking for working autoheader... found |
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| 172 | :info:configure checking for gawk... gawk |
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| 173 | :info:configure checking whether ln -s works... yes |
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| 174 | :info:configure checking for bison... bison -y |
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| 175 | :info:configure checking for ar... ar |
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| 176 | :info:configure checking for a BSD-compatible install... /usr/bin/install -c |
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| 177 | :info:configure checking for sed... /usr/bin/sed |
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| 178 | :info:configure checking for which... /usr/bin/which |
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| 179 | :info:configure checking for less... /opt/local/bin/less |
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| 180 | :info:configure checking for gtar... no |
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| 181 | :info:configure checking for gnutar... no |
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| 182 | :info:configure checking for tar... /usr/bin/tar |
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| 183 | :info:configure checking for tex... /opt/local/bin/tex |
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| 184 | :info:configure checking for pdftex... /opt/local/bin/pdftex |
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| 185 | :info:configure checking for pdflatex... /opt/local/bin/pdflatex |
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| 186 | :info:configure checking for makeindex... /opt/local/bin/makeindex |
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| 187 | :info:configure checking for makeinfo... /opt/local/bin/makeinfo |
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| 188 | :info:configure checking whether makeinfo version is at least 4.7... yes |
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| 189 | :info:configure checking for ginstall-info... no |
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| 190 | :info:configure checking for install-info... /opt/local/bin/install-info |
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| 191 | :info:configure checking for texi2dvi... /opt/local/bin/texi2dvi |
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| 192 | :info:configure checking for kpsewhich... /opt/local/bin/kpsewhich |
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| 193 | :info:configure checking for latex inconsolata package... missing |
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| 194 | :info:configure configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally |
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| 195 | :info:configure checking for unzip... /usr/bin/unzip |
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| 196 | :info:configure checking for zip... /usr/bin/zip |
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| 197 | :info:configure checking for gzip... /opt/local/bin/gzip |
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| 198 | :info:configure checking for bzip2... /opt/local/bin/bzip2 |
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| 199 | :info:configure checking for firefox... no |
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| 200 | :info:configure checking for mozilla... no |
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| 201 | :info:configure checking for galeon... no |
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| 202 | :info:configure checking for opera... no |
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| 203 | :info:configure checking for xdg-open... /opt/local/bin/xdg-open |
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| 204 | :info:configure using default browser ... /opt/local/bin/xdg-open |
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| 205 | :info:configure checking for acroread... no |
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| 206 | :info:configure checking for acroread4... no |
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| 207 | :info:configure checking for xdg-open... /opt/local/bin/xdg-open |
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| 208 | :info:configure checking for notangle... false |
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| 209 | :info:configure checking for realpath... false |
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| 210 | :info:configure checking for pkg-config... /opt/local/bin/pkg-config |
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| 211 | :info:configure checking for gcc... /usr/bin/clang |
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| 212 | :info:configure checking whether the C compiler works... yes |
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| 213 | :info:configure checking for C compiler default output file name... a.out |
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| 214 | :info:configure checking for suffix of executables... |
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| 215 | :info:configure checking whether we are cross compiling... no |
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| 216 | :info:configure checking for suffix of object files... o |
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| 217 | :info:configure checking whether we are using the GNU C compiler... yes |
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| 218 | :info:configure checking whether /usr/bin/clang accepts -g... yes |
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| 219 | :info:configure checking for /usr/bin/clang option to accept ISO C89... none needed |
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| 220 | :info:configure checking how to run the C preprocessor... /usr/bin/clang -E |
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| 221 | :info:configure checking for grep that handles long lines and -e... /opt/local/bin/grep |
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| 222 | :info:configure checking for egrep... /opt/local/bin/grep -E |
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| 223 | :info:configure checking whether /usr/bin/clang needs -traditional... no |
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| 224 | :info:configure checking how to run the C preprocessor... /usr/bin/clang -E |
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| 225 | :info:configure defining F77 to be /opt/local/bin/gfortran-mp-4.8 |
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| 226 | :info:configure checking whether we are using the GNU Fortran 77 compiler... no |
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| 227 | :info:configure checking whether /opt/local/bin/gfortran-mp-4.8 accepts -g... no |
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| 228 | :info:configure checking whether we are using the GNU C++ compiler... yes |
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| 229 | :info:configure checking whether /usr/bin/clang++ accepts -g... yes |
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| 230 | :info:configure checking how to run the C++ preprocessor... /usr/bin/clang++ -E |
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| 231 | :info:configure checking whether __attribute__((visibility())) is supported... no |
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| 232 | :info:configure checking whether /usr/bin/clang accepts -fvisibility... yes |
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| 233 | :info:configure checking whether /opt/local/bin/gfortran-mp-4.8 accepts -fvisibility... no |
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| 234 | :info:configure checking for ANSI C header files... yes |
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| 235 | :info:configure checking for sys/types.h... yes |
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| 236 | :info:configure checking for sys/stat.h... yes |
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| 237 | :info:configure checking for stdlib.h... yes |
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| 238 | :info:configure checking for string.h... yes |
|---|
| 239 | :info:configure checking for memory.h... yes |
|---|
| 240 | :info:configure checking for strings.h... yes |
|---|
| 241 | :info:configure checking for inttypes.h... yes |
|---|
| 242 | :info:configure checking for stdint.h... yes |
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| 243 | :info:configure checking for unistd.h... yes |
|---|
| 244 | :info:configure checking minix/config.h usability... no |
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| 245 | :info:configure checking minix/config.h presence... no |
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| 246 | :info:configure checking for minix/config.h... no |
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| 247 | :info:configure checking whether it is safe to define __EXTENSIONS__... yes |
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| 248 | :info:configure checking whether we are using the GNU Objective C compiler... yes |
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| 249 | :info:configure checking whether /usr/bin/clang accepts -g... yes |
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| 250 | :info:configure checking for Objective C++ compiler... trying some possibilities |
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| 251 | :info:configure checking whether /usr/bin/clang++ can compile ObjC++... yes |
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| 252 | :info:configure /usr/bin/clang++ |
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| 253 | :info:configure checking for a sed that does not truncate output... (cached) /usr/bin/sed |
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| 254 | :info:configure checking for fgrep... /opt/local/bin/grep -F |
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| 255 | :info:configure checking for ld used by /usr/bin/clang... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld |
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| 256 | :info:configure checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no |
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| 257 | :info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm |
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| 258 | :info:configure checking the name lister (/opt/local/bin/nm) interface... BSD nm |
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| 259 | :info:configure checking the maximum length of command line arguments... 196608 |
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| 260 | :info:configure checking whether the shell understands some XSI constructs... yes |
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| 261 | :info:configure checking whether the shell understands "+="... yes |
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| 262 | :info:configure checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r |
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| 263 | :info:configure checking for objdump... no |
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| 264 | :info:configure checking how to recognize dependent libraries... pass_all |
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| 265 | :info:configure checking for strip... strip |
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| 266 | :info:configure checking for ranlib... ranlib |
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| 267 | :info:configure checking command to parse /opt/local/bin/nm output from /usr/bin/clang object... ok |
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| 268 | :info:configure checking for dsymutil... dsymutil |
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| 269 | :info:configure checking for nmedit... nmedit |
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| 270 | :info:configure checking for lipo... lipo |
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| 271 | :info:configure checking for otool... otool |
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| 272 | :info:configure checking for otool64... no |
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| 273 | :info:configure checking for -single_module linker flag... yes |
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| 274 | :info:configure checking for -exported_symbols_list linker flag... yes |
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| 275 | :info:configure checking for dlfcn.h... yes |
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| 276 | :info:configure checking whether we are using the GNU C++ compiler... (cached) yes |
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| 277 | :info:configure checking whether /usr/bin/clang++ accepts -g... (cached) yes |
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| 278 | :info:configure checking how to run the C++ preprocessor... /usr/bin/clang++ -E |
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| 279 | :info:configure checking whether we are using the GNU Fortran 77 compiler... (cached) no |
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| 280 | :info:configure checking whether /opt/local/bin/gfortran-mp-4.8 accepts -g... (cached) no |
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| 281 | :info:configure checking for objdir... .libs |
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| 282 | :info:configure checking if /usr/bin/clang supports -fno-rtti -fno-exceptions... yes |
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| 283 | :info:configure checking for /usr/bin/clang option to produce PIC... -fno-common -DPIC |
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| 284 | :info:configure checking if /usr/bin/clang PIC flag -fno-common -DPIC works... yes |
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| 285 | :info:configure checking if /usr/bin/clang static flag -static works... no |
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| 286 | :info:configure checking if /usr/bin/clang supports -c -o file.o... yes |
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| 287 | :info:configure checking if /usr/bin/clang supports -c -o file.o... (cached) yes |
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| 288 | :info:configure checking whether the /usr/bin/clang linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes |
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| 289 | :info:configure checking dynamic linker characteristics... darwin13.2.0 dyld |
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| 290 | :info:configure checking how to hardcode library paths into programs... immediate |
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| 291 | :info:configure checking whether stripping libraries is possible... yes |
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| 292 | :info:configure checking if libtool supports shared libraries... yes |
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| 293 | :info:configure checking whether to build shared libraries... yes |
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| 294 | :info:configure checking whether to build static libraries... no |
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| 295 | :info:configure checking for ld used by /usr/bin/clang++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld |
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| 296 | :info:configure checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no |
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| 297 | :info:configure checking whether the /usr/bin/clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes |
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| 298 | :info:configure checking for /usr/bin/clang++ option to produce PIC... -fno-common -DPIC |
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| 299 | :info:configure checking if /usr/bin/clang++ PIC flag -fno-common -DPIC works... yes |
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| 300 | :info:configure checking if /usr/bin/clang++ static flag -static works... no |
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| 301 | :info:configure checking if /usr/bin/clang++ supports -c -o file.o... yes |
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| 302 | :info:configure checking if /usr/bin/clang++ supports -c -o file.o... (cached) yes |
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| 303 | :info:configure checking whether the /usr/bin/clang++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes |
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| 304 | :info:configure checking dynamic linker characteristics... darwin13.2.0 dyld |
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| 305 | :info:configure checking how to hardcode library paths into programs... immediate |
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| 306 | :info:configure checking if libtool supports shared libraries... yes |
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| 307 | :info:configure checking whether to build shared libraries... yes |
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| 308 | :info:configure checking whether to build static libraries... no |
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| 309 | :info:configure checking for /opt/local/bin/gfortran-mp-4.8 option to produce PIC... |
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| 310 | :info:configure checking if /opt/local/bin/gfortran-mp-4.8 static flag works... no |
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| 311 | :info:configure checking if /opt/local/bin/gfortran-mp-4.8 supports -c -o file.o... no |
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| 312 | :info:configure checking if /opt/local/bin/gfortran-mp-4.8 supports -c -o file.o... (cached) no |
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| 313 | :info:configure checking whether the /opt/local/bin/gfortran-mp-4.8 linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... no |
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| 314 | :info:configure checking dynamic linker characteristics... darwin13.2.0 dyld |
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| 315 | :info:configure checking how to hardcode library paths into programs... immediate |
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| 316 | :info:configure checking for sin in -lm... yes |
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| 317 | :info:configure checking for library containing dlopen... none required |
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| 318 | :info:configure checking readline/history.h usability... yes |
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| 319 | :info:configure checking readline/history.h presence... yes |
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| 320 | :info:configure checking for readline/history.h... yes |
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| 321 | :info:configure checking readline/readline.h usability... yes |
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| 322 | :info:configure checking readline/readline.h presence... yes |
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| 323 | :info:configure checking for readline/readline.h... yes |
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| 324 | :info:configure checking for rl_callback_read_char in -lreadline... yes |
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| 325 | :info:configure checking for history_truncate_file... yes |
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| 326 | :info:configure checking whether rl_completion_matches exists and is declared... yes |
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| 327 | :info:configure checking for ANSI C header files... (cached) yes |
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| 328 | :info:configure checking for dirent.h that defines DIR... yes |
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| 329 | :info:configure checking for library containing opendir... none required |
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| 330 | :info:configure checking for sys/wait.h that is POSIX.1 compatible... yes |
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| 331 | :info:configure checking arpa/inet.h usability... yes |
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| 332 | :info:configure checking arpa/inet.h presence... yes |
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| 333 | :info:configure checking for arpa/inet.h... yes |
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| 334 | :info:configure checking dl.h usability... no |
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| 335 | :info:configure checking dl.h presence... no |
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| 336 | :info:configure checking for dl.h... no |
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| 337 | :info:configure checking for dlfcn.h... (cached) yes |
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| 338 | :info:configure checking elf.h usability... no |
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| 339 | :info:configure checking elf.h presence... no |
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| 340 | :info:configure checking for elf.h... no |
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| 341 | :info:configure checking fcntl.h usability... yes |
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| 342 | :info:configure checking fcntl.h presence... yes |
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| 343 | :info:configure checking for fcntl.h... yes |
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| 344 | :info:configure checking floatingpoint.h usability... no |
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| 345 | :info:configure checking floatingpoint.h presence... no |
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| 346 | :info:configure checking for floatingpoint.h... no |
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| 347 | :info:configure checking fpu_control.h usability... no |
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| 348 | :info:configure checking fpu_control.h presence... no |
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| 349 | :info:configure checking for fpu_control.h... no |
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| 350 | :info:configure checking glob.h usability... yes |
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| 351 | :info:configure checking glob.h presence... yes |
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| 352 | :info:configure checking for glob.h... yes |
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| 353 | :info:configure checking grp.h usability... yes |
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| 354 | :info:configure checking grp.h presence... yes |
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| 355 | :info:configure checking for grp.h... yes |
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| 356 | :info:configure checking langinfo.h usability... yes |
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| 357 | :info:configure checking langinfo.h presence... yes |
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| 358 | :info:configure checking for langinfo.h... yes |
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| 359 | :info:configure checking netdb.h usability... yes |
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| 360 | :info:configure checking netdb.h presence... yes |
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| 361 | :info:configure checking for netdb.h... yes |
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| 362 | :info:configure checking netinet/in.h usability... yes |
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| 363 | :info:configure checking netinet/in.h presence... yes |
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| 364 | :info:configure checking for netinet/in.h... yes |
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| 365 | :info:configure checking pwd.h usability... yes |
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| 366 | :info:configure checking pwd.h presence... yes |
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| 367 | :info:configure checking for pwd.h... yes |
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| 368 | :info:configure checking sched.h usability... yes |
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| 369 | :info:configure checking sched.h presence... yes |
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| 370 | :info:configure checking for sched.h... yes |
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| 371 | :info:configure checking for strings.h... (cached) yes |
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| 372 | :info:configure checking sys/param.h usability... yes |
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| 373 | :info:configure checking sys/param.h presence... yes |
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| 374 | :info:configure checking for sys/param.h... yes |
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| 375 | :info:configure checking sys/resource.h usability... yes |
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| 376 | :info:configure checking sys/resource.h presence... yes |
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| 377 | :info:configure checking for sys/resource.h... yes |
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| 378 | :info:configure checking sys/select.h usability... yes |
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| 379 | :info:configure checking sys/select.h presence... yes |
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| 380 | :info:configure checking for sys/select.h... yes |
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| 381 | :info:configure checking sys/socket.h usability... yes |
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| 382 | :info:configure checking sys/socket.h presence... yes |
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| 383 | :info:configure checking for sys/socket.h... yes |
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| 384 | :info:configure checking for sys/stat.h... (cached) yes |
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| 385 | :info:configure checking sys/time.h usability... yes |
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| 386 | :info:configure checking sys/time.h presence... yes |
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| 387 | :info:configure checking for sys/time.h... yes |
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| 388 | :info:configure checking sys/times.h usability... yes |
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| 389 | :info:configure checking sys/times.h presence... yes |
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| 390 | :info:configure checking for sys/times.h... yes |
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| 391 | :info:configure checking sys/utsname.h usability... yes |
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| 392 | :info:configure checking sys/utsname.h presence... yes |
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| 393 | :info:configure checking for sys/utsname.h... yes |
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| 394 | :info:configure checking for unistd.h... (cached) yes |
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| 395 | :info:configure checking utime.h usability... yes |
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| 396 | :info:configure checking utime.h presence... yes |
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| 397 | :info:configure checking for utime.h... yes |
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| 398 | :info:configure checking errno.h usability... yes |
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| 399 | :info:configure checking errno.h presence... yes |
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| 400 | :info:configure checking for errno.h... yes |
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| 401 | :info:configure checking for inttypes.h... (cached) yes |
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| 402 | :info:configure checking limits.h usability... yes |
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| 403 | :info:configure checking limits.h presence... yes |
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| 404 | :info:configure checking for limits.h... yes |
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| 405 | :info:configure checking locale.h usability... yes |
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| 406 | :info:configure checking locale.h presence... yes |
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| 407 | :info:configure checking for locale.h... yes |
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| 408 | :info:configure checking stdarg.h usability... yes |
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| 409 | :info:configure checking stdarg.h presence... yes |
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| 410 | :info:configure checking for stdarg.h... yes |
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| 411 | :info:configure checking stdbool.h usability... yes |
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| 412 | :info:configure checking stdbool.h presence... yes |
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| 413 | :info:configure checking for stdbool.h... yes |
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| 414 | :info:configure checking for stdint.h... (cached) yes |
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| 415 | :info:configure checking for string.h... (cached) yes |
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| 416 | :info:configure checking whether setjmp.h is POSIX.1 compatible... yes |
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| 417 | :info:configure checking whether sigsetjmp is declared... yes |
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| 418 | :info:configure checking whether siglongjmp is declared... yes |
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| 419 | :info:configure checking for GNU C library with version >= 2... no |
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| 420 | :info:configure checking return type of signal handlers... void |
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| 421 | :info:configure checking for uint64_t... yes |
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| 422 | :info:configure checking for int64_t... yes |
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| 423 | :info:configure checking for int_fast64_t... yes |
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| 424 | :info:configure checking for pid_t... yes |
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| 425 | :info:configure checking for size_t... yes |
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| 426 | :info:configure checking whether SIZE_MAX is declared... yes |
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| 427 | :info:configure checking for blkcnt_t... yes |
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| 428 | :info:configure checking for type of socket length... socklen_t * |
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| 429 | :info:configure checking for stack_t... yes |
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| 430 | :info:configure checking for intptr_t... yes |
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| 431 | :info:configure checking for uintptr_t... yes |
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| 432 | :info:configure checking whether byte ordering is bigendian... no |
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| 433 | :info:configure checking for an ANSI C-conforming const... yes |
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| 434 | :info:configure checking for /usr/bin/clang option to accept ISO C99... none needed |
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| 435 | :info:configure checking for /usr/bin/clang option to accept ISO Standard C... (cached) none needed |
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| 436 | :info:configure checking for inline... inline |
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| 437 | :info:configure checking size of int... 4 |
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| 438 | :info:configure checking size of long... 8 |
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| 439 | :info:configure checking size of long long... 8 |
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| 440 | :info:configure checking size of double... 8 |
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| 441 | :info:configure checking size of size_t... 8 |
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| 442 | :info:configure checking size of long double... 16 |
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| 443 | :info:configure checking whether we can compute C Make dependencies... yes, using $(CC) -MM |
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| 444 | :info:configure checking whether /usr/bin/clang supports -c -o FILE.lo... yes |
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| 445 | :info:configure checking how to get verbose linking output from /opt/local/bin/gfortran-mp-4.8... configure: WARNING: compilation failed |
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| 446 | :info:configure |
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| 447 | :info:configure checking for Fortran 77 libraries of /opt/local/bin/gfortran-mp-4.8... |
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| 448 | :info:configure checking how to get verbose linking output from /usr/bin/clang... configure: WARNING: cannot determine how to obtain linking information from /usr/bin/clang |
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| 449 | :info:configure |
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| 450 | :info:configure checking for C libraries of /usr/bin/clang... |
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| 451 | :info:configure checking for dummy main to link with Fortran 77 libraries... none |
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| 452 | :info:configure checking for Fortran 77 name-mangling scheme... configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0': |
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| 453 | :info:configure configure: error: cannot compile a simple Fortran program |
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| 454 | :info:configure See `config.log' for more details |
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| 455 | :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0" && ./configure --prefix=/opt/local/Library/Frameworks --enable-R-framework --enable-R-shlib --enable-BLAS-shlib --disable-openmp --with-readline --with-aqua --without-tcltk --with-libpng --with-ICU --with-included-gettext --without-internal-tzcode --with-blas="-framework vecLib" --with-lapack="-framework vecLib" --with-x --with-jpeglib --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib --with-cairo --with-recommended-packages |
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| 456 | :info:configure Exit code: 1 |
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| 457 | :error:configure Failed to configure R, consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-3.1.0/config.log |
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| 458 | :error:configure org.macports.configure for port R returned: configure failure: command execution failed |
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| 459 | :debug:configure Error code: NONE |
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| 460 | :debug:configure Backtrace: configure failure: command execution failed |
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| 461 | while executing |
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| 462 | "portconfigure::configure_main org.macports.configure" |
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| 463 | ("eval" body line 1) |
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| 464 | invoked from within |
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| 465 | "eval $procedure $targetname" |
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| 466 | :info:configure Warning: targets not executed for R: org.macports.install org.macports.configure org.macports.build org.macports.destroot |
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| 467 | :notice:configure Please see the log file for port R for details: |
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| 468 | /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/main.log |
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