Ticket #45401: main.log

File main.log, 592.2 KB (added by josh.baraban@…, 3 years ago)

main.log

Line 
1version:1
2:debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3:debug:main epoch: in tree: 2 installed: 2
4:debug:main python27 2.7.8_2 exists in the ports tree
5:debug:main python27 2.7.8_2 +universal is the latest installed
6:debug:main python27 2.7.8_2 +universal is active
7:debug:main Merging existing variants '+universal' into variants
8:debug:main new fully merged portvariants: universal +
9:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
10:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
11:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
12:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
13:debug:main universal variant already exists, so not adding the default one
14:debug:main Executing variant universal provides universal
15:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
16:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
17:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
18:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
19:debug:main No need to upgrade! python27 2.7.8_2 >= python27 2.7.8_2
20:debug:main epoch: in tree: 2 installed: 2
21:debug:main gettext 0.19.2_0 exists in the ports tree
22:debug:main gettext 0.19.2_0 +universal is the latest installed
23:debug:main gettext 0.19.2_0 +universal is active
24:debug:main Merging existing variants '+universal' into variants
25:debug:main new fully merged portvariants: universal +
26:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
27:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
28:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
29:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
30:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
31:debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang < 211.10.1}
32:debug:main universal variant already exists, so not adding the default one
33:debug:main Executing variant universal provides universal
34:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
35:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
36:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
37:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
38:debug:main No need to upgrade! gettext 0.19.2_0 >= gettext 0.19.2_0
39:debug:main epoch: in tree: 0 installed: 0
40:debug:main expat 2.1.0_0 exists in the ports tree
41:debug:main expat 2.1.0_0  is the latest installed
42:debug:main expat 2.1.0_0 +universal is active
43:debug:main Merging existing variants '+universal' into variants
44:debug:main new fully merged portvariants: universal +
45:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
46:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
47:debug:main adding the default universal variant
48:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
49:debug:main Executing variant universal provides universal
50:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
51:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
52:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
53:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
54:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
55:debug:main epoch: in tree: 0 installed: 0
56:debug:main libiconv 1.14_0 exists in the ports tree
57:debug:main libiconv 1.14_0  is the latest installed
58:debug:main libiconv 1.14_0 +universal is active
59:debug:main Merging existing variants '+universal' into variants
60:debug:main new fully merged portvariants: universal +
61:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
62:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
63:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
64:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
65:debug:main universal variant already exists, so not adding the default one
66:debug:main Executing variant universal provides universal
67:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
68:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
69:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
70:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
71:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
72:debug:main epoch: in tree: 0 installed: 0
73:debug:main ncurses 5.9_2 exists in the ports tree
74:debug:main ncurses 5.9_2  is the latest installed
75:debug:main ncurses 5.9_2 +universal is active
76:debug:main Merging existing variants '+universal' into variants
77:debug:main new fully merged portvariants: universal +
78:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
79:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
80:debug:main adding the default universal variant
81:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
82:debug:main Executing variant universal provides universal
83:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
84:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
85:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
86:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
87:debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
88:debug:main epoch: in tree: 0 installed: 0
89:debug:main zlib 1.2.8_0 exists in the ports tree
90:debug:main zlib 1.2.8_0  is the latest installed
91:debug:main zlib 1.2.8_0 +universal is active
92:debug:main Merging existing variants '+universal' into variants
93:debug:main new fully merged portvariants: universal +
94:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
95:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
96:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
97:debug:main adding the default universal variant
98:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
99:debug:main Executing variant universal provides universal
100:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
101:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
102:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
103:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
104:debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
105:debug:main epoch: in tree: 1 installed: 1
106:debug:main openssl 1.0.1i_0 exists in the ports tree
107:debug:main openssl 1.0.1i_0 +universal is the latest installed
108:debug:main openssl 1.0.1i_0 +universal is active
109:debug:main Merging existing variants '+universal' into variants
110:debug:main new fully merged portvariants: universal +
111:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
112:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
113:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
114:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
115:debug:main universal variant already exists, so not adding the default one
116:debug:main Executing variant universal provides universal
117:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
118:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
119:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
120:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
121:debug:main No need to upgrade! openssl 1.0.1i_0 >= openssl 1.0.1i_0
122:debug:main epoch: in tree: 0 installed: 0
123:debug:main sqlite3 3.8.6_0 exists in the ports tree
124:debug:main sqlite3 3.8.6_0 +universal is the latest installed
125:debug:main sqlite3 3.8.6_0 +universal is active
126:debug:main Merging existing variants '+universal' into variants
127:debug:main new fully merged portvariants: universal +
128:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
129:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
130:debug:main adding the default universal variant
131:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
132:debug:main Executing variant universal provides universal
133:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
134:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
135:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
136:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
137:debug:main No need to upgrade! sqlite3 3.8.6_0 >= sqlite3 3.8.6_0
138:debug:main epoch: in tree: 20090923 installed: 20090923
139:debug:main libedit 20121213-3.0_0 exists in the ports tree
140:debug:main libedit 20121213-3.0_0  is the latest installed
141:debug:main libedit 20121213-3.0_0 +universal is active
142:debug:main Merging existing variants '+universal' into variants
143:debug:main new fully merged portvariants: universal +
144:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
145:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
146:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
147:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
148:debug:main universal variant already exists, so not adding the default one
149:debug:main Executing variant universal provides universal
150:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
151:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
152:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
153:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
154:debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0
155:debug:main epoch: in tree: 0 installed: 0
156:debug:main db48 4.8.30_3 exists in the ports tree
157:debug:main db48 4.8.30_3 +universal is the latest installed
158:debug:main db48 4.8.30_3 +universal is active
159:debug:main Merging existing variants '+universal' into variants
160:debug:main new fully merged portvariants: universal +
161:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db48
162:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
163:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
164:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
165:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
166:debug:main universal variant already exists, so not adding the default one
167:debug:main Executing variant universal provides universal
168:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
169:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
170:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
171:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
172:debug:main No need to upgrade! db48 4.8.30_3 >= db48 4.8.30_3
173:debug:main epoch: in tree: 0 installed: 0
174:debug:main db_select 0.1_2 exists in the ports tree
175:debug:main db_select 0.1_2  is the latest installed
176:debug:main db_select 0.1_2  is active
177:debug:main Merging existing variants '' into variants
178:debug:main new fully merged portvariants:
179:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/db_select
180:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
181:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
182:debug:main universal_variant is false, so not adding the default universal variant
183:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
184:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
185:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
186:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
187:debug:main No need to upgrade! db_select 0.1_2 >= db_select 0.1_2
188:debug:main epoch: in tree: 0 installed: 0
189:debug:main bzip2 1.0.6_0 exists in the ports tree
190:debug:main bzip2 1.0.6_0  is the latest installed
191:debug:main bzip2 1.0.6_0 +universal is active
192:debug:main Merging existing variants '+universal' into variants
193:debug:main new fully merged portvariants: universal +
194:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
195:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
196:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
197:debug:main universal variant already exists, so not adding the default one
198:debug:main Executing variant universal provides universal
199:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
200:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
201:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
202:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
203:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
204:debug:main epoch: in tree: 0 installed: 0
205:debug:main python_select 0.3_3 exists in the ports tree
206:debug:main python_select 0.3_3  is the latest installed
207:debug:main python_select 0.3_3  is active
208:debug:main Merging existing variants '' into variants
209:debug:main new fully merged portvariants:
210:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
211:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
212:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
213:debug:main universal_variant is false, so not adding the default universal variant
214:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
215:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
216:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
217:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
218:debug:main No need to upgrade! python_select 0.3_3 >= python_select 0.3_3
219:debug:main epoch: in tree: 0 installed: 0
220:debug:main freeglut 2.8.1_0 exists in the ports tree
221:debug:main freeglut 2.8.1_0  is the latest installed
222:debug:main freeglut 2.8.1_0  is active
223:debug:main Merging existing variants '' into variants
224:debug:main new fully merged portvariants:
225:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/freeglut
226:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
227:debug:main adding the default universal variant
228:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
229:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
230:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
231:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
232:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
233:debug:main No need to upgrade! freeglut 2.8.1_0 >= freeglut 2.8.1_0
234:debug:main epoch: in tree: 1 installed: 1
235:debug:main mesa 8.0.5_3 exists in the ports tree
236:debug:main mesa 8.0.5_3 +python27+universal is the latest installed
237:debug:main mesa 8.0.5_3 +python27+universal is active
238:debug:main Merging existing variants '+python27+universal' into variants
239:debug:main new fully merged portvariants: universal + python27 +
240:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/mesa
241:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
242:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
243:debug:main universal variant already exists, so not adding the default one
244:debug:main Executing variant universal provides universal
245:debug:main Executing variant python27 provides python27
246:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
247:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
248:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
249:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
250:debug:main No need to upgrade! mesa 8.0.5_3 >= mesa 8.0.5_3
251:debug:main epoch: in tree: 0 installed: 0
252:debug:main xorg-glproto 1.4.17_0 exists in the ports tree
253:debug:main xorg-glproto 1.4.17_0  is the latest installed
254:debug:main xorg-glproto 1.4.17_0  is active
255:debug:main Merging existing variants '' into variants
256:debug:main new fully merged portvariants:
257:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-glproto
258:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
259:debug:main only one arch supported, so not adding the default universal variant
260:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
261:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
262:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
263:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
264:debug:main No need to upgrade! xorg-glproto 1.4.17_0 >= xorg-glproto 1.4.17_0
265:debug:main epoch: in tree: 0 installed: 0
266:debug:main xorg-dri2proto 2.8_0 exists in the ports tree
267:debug:main xorg-dri2proto 2.8_0  is the latest installed
268:debug:main xorg-dri2proto 2.8_0  is active
269:debug:main Merging existing variants '' into variants
270:debug:main new fully merged portvariants:
271:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-dri2proto
272:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
273:debug:main only one arch supported, so not adding the default universal variant
274:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
275:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
276:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
277:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
278:debug:main No need to upgrade! xorg-dri2proto 2.8_0 >= xorg-dri2proto 2.8_0
279:debug:main epoch: in tree: 0 installed: 0
280:debug:main xorg-libXfixes 5.0.1_0 exists in the ports tree
281:debug:main xorg-libXfixes 5.0.1_0 +universal is the latest installed
282:debug:main xorg-libXfixes 5.0.1_0 +universal is active
283:debug:main Merging existing variants '+universal' into variants
284:debug:main new fully merged portvariants: universal +
285:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXfixes
286:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
287:debug:main adding the default universal variant
288:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
289:debug:main Executing variant universal provides universal
290:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
291:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
292:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
293:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
294:debug:main No need to upgrade! xorg-libXfixes 5.0.1_0 >= xorg-libXfixes 5.0.1_0
295:debug:main epoch: in tree: 0 installed: 0
296:debug:main xorg-libX11 1.6.2_0 exists in the ports tree
297:debug:main xorg-libX11 1.6.2_0 +universal is the latest installed
298:debug:main xorg-libX11 1.6.2_0 +universal is active
299:debug:main Merging existing variants '+universal' into variants
300:debug:main new fully merged portvariants: universal +
301:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libX11
302:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
303:debug:main adding the default universal variant
304:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
305:debug:main Executing variant universal provides universal
306:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
307:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
308:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
309:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
310:debug:main No need to upgrade! xorg-libX11 1.6.2_0 >= xorg-libX11 1.6.2_0
311:debug:main epoch: in tree: 0 installed: 0
312:debug:main xorg-libXdmcp 1.1.1_0 exists in the ports tree
313:debug:main xorg-libXdmcp 1.1.1_0 +universal is the latest installed
314:debug:main xorg-libXdmcp 1.1.1_0 +universal is active
315:debug:main Merging existing variants '+universal' into variants
316:debug:main new fully merged portvariants: universal +
317:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXdmcp
318:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
319:debug:main adding the default universal variant
320:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
321:debug:main Executing variant universal provides universal
322:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
323:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
324:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
325:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
326:debug:main No need to upgrade! xorg-libXdmcp 1.1.1_0 >= xorg-libXdmcp 1.1.1_0
327:debug:main epoch: in tree: 0 installed: 0
328:debug:main xorg-libXau 1.0.8_0 exists in the ports tree
329:debug:main xorg-libXau 1.0.8_0 +universal is the latest installed
330:debug:main xorg-libXau 1.0.8_0 +universal is active
331:debug:main Merging existing variants '+universal' into variants
332:debug:main new fully merged portvariants: universal +
333:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXau
334:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
335:debug:main adding the default universal variant
336:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
337:debug:main Executing variant universal provides universal
338:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
339:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
340:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
341:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
342:debug:main No need to upgrade! xorg-libXau 1.0.8_0 >= xorg-libXau 1.0.8_0
343:debug:main epoch: in tree: 0 installed: 0
344:debug:main xorg-xproto 7.0.26_0 exists in the ports tree
345:debug:main xorg-xproto 7.0.26_0  is the latest installed
346:debug:main xorg-xproto 7.0.26_0  is active
347:debug:main Merging existing variants '' into variants
348:debug:main new fully merged portvariants:
349:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xproto
350:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
351:debug:main only one arch supported, so not adding the default universal variant
352:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
353:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
354:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
355:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
356:debug:main No need to upgrade! xorg-xproto 7.0.26_0 >= xorg-xproto 7.0.26_0
357:debug:main epoch: in tree: 0 installed: 0
358:debug:main xorg-libxcb 1.11_0 exists in the ports tree
359:debug:main xorg-libxcb 1.11_0 +python27+universal is the latest installed
360:debug:main xorg-libxcb 1.11_0 +python27+universal is active
361:debug:main Merging existing variants '+python27+universal' into variants
362:debug:main new fully merged portvariants: universal + python27 +
363:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libxcb
364:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
365:debug:main adding the default universal variant
366:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
367:debug:main Executing variant python27 provides python27
368:debug:main Executing variant universal provides universal
369:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
370:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
371:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
372:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
373:debug:main No need to upgrade! xorg-libxcb 1.11_0 >= xorg-libxcb 1.11_0
374:debug:main epoch: in tree: 0 installed: 0
375:debug:main xorg-xcb-proto 1.11_0 exists in the ports tree
376:debug:main xorg-xcb-proto 1.11_0 +python27 is the latest installed
377:debug:main xorg-xcb-proto 1.11_0 +python27 is active
378:debug:main Merging existing variants '+python27' into variants
379:debug:main new fully merged portvariants: python27 +
380:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xcb-proto
381:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
382:debug:main only one arch supported, so not adding the default universal variant
383:debug:main Executing variant python27 provides python27
384:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
385:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
386:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
387:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
388:debug:main No need to upgrade! xorg-xcb-proto 1.11_0 >= xorg-xcb-proto 1.11_0
389:debug:main epoch: in tree: 0 installed: 0
390:debug:main libxml2 2.9.1_0 exists in the ports tree
391:debug:main libxml2 2.9.1_0 +universal is the latest installed
392:debug:main libxml2 2.9.1_0 +universal is active
393:debug:main Merging existing variants '+universal' into variants
394:debug:main new fully merged portvariants: universal +
395:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2
396:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
397:debug:main adding the default universal variant
398:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
399:debug:main Executing variant universal provides universal
400:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
401:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
402:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
403:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
404:debug:main No need to upgrade! libxml2 2.9.1_0 >= libxml2 2.9.1_0
405:debug:main epoch: in tree: 0 installed: 0
406:debug:main xz 5.0.7_0 exists in the ports tree
407:debug:main xz 5.0.7_0 +universal is the latest installed
408:debug:main xz 5.0.7_0 +universal is active
409:debug:main Merging existing variants '+universal' into variants
410:debug:main new fully merged portvariants: universal +
411:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz
412:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
413:debug:main adding the default universal variant
414:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
415:debug:main Executing variant universal provides universal
416:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
417:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
418:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
419:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
420:debug:main No need to upgrade! xz 5.0.7_0 >= xz 5.0.7_0
421:debug:main epoch: in tree: 0 installed: 0
422:debug:main xorg-libpthread-stubs 0.3_0 exists in the ports tree
423:debug:main xorg-libpthread-stubs 0.3_0  is the latest installed
424:debug:main xorg-libpthread-stubs 0.3_0  is active
425:debug:main Merging existing variants '' into variants
426:debug:main new fully merged portvariants:
427:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libpthread-stubs
428:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
429:debug:main only one arch supported, so not adding the default universal variant
430:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
431:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
432:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
433:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
434:debug:main No need to upgrade! xorg-libpthread-stubs 0.3_0 >= xorg-libpthread-stubs 0.3_0
435:debug:main epoch: in tree: 0 installed: 0
436:debug:main xorg-kbproto 1.0.6_0 exists in the ports tree
437:debug:main xorg-kbproto 1.0.6_0  is the latest installed
438:debug:main xorg-kbproto 1.0.6_0  is active
439:debug:main Merging existing variants '' into variants
440:debug:main new fully merged portvariants:
441:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-kbproto
442:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
443:debug:main only one arch supported, so not adding the default universal variant
444:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
445:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
446:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
447:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
448:debug:main No need to upgrade! xorg-kbproto 1.0.6_0 >= xorg-kbproto 1.0.6_0
449:debug:main epoch: in tree: 0 installed: 0
450:debug:main xorg-fixesproto 5.0_0 exists in the ports tree
451:debug:main xorg-fixesproto 5.0_0  is the latest installed
452:debug:main xorg-fixesproto 5.0_0  is active
453:debug:main Merging existing variants '' into variants
454:debug:main new fully merged portvariants:
455:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-fixesproto
456:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
457:debug:main only one arch supported, so not adding the default universal variant
458:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
459:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
460:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
461:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
462:debug:main No need to upgrade! xorg-fixesproto 5.0_0 >= xorg-fixesproto 5.0_0
463:debug:main epoch: in tree: 0 installed: 0
464:debug:main xorg-xextproto 7.3.0_0 exists in the ports tree
465:debug:main xorg-xextproto 7.3.0_0  is the latest installed
466:debug:main xorg-xextproto 7.3.0_0  is active
467:debug:main Merging existing variants '' into variants
468:debug:main new fully merged portvariants:
469:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xextproto
470:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
471:debug:main only one arch supported, so not adding the default universal variant
472:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
473:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
474:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
475:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
476:debug:main No need to upgrade! xorg-xextproto 7.3.0_0 >= xorg-xextproto 7.3.0_0
477:debug:main epoch: in tree: 0 installed: 0
478:debug:main xorg-libXi 1.7.4_0 exists in the ports tree
479:debug:main xorg-libXi 1.7.4_0 +universal is the latest installed
480:debug:main xorg-libXi 1.7.4_0 +universal is active
481:debug:main Merging existing variants '+universal' into variants
482:debug:main new fully merged portvariants: universal +
483:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXi
484:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
485:debug:main adding the default universal variant
486:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
487:debug:main Executing variant universal provides universal
488:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
489:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
490:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
491:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
492:debug:main No need to upgrade! xorg-libXi 1.7.4_0 >= xorg-libXi 1.7.4_0
493:debug:main epoch: in tree: 0 installed: 0
494:debug:main xorg-libXext 1.3.3_0 exists in the ports tree
495:debug:main xorg-libXext 1.3.3_0 +universal is the latest installed
496:debug:main xorg-libXext 1.3.3_0 +universal is active
497:debug:main Merging existing variants '+universal' into variants
498:debug:main new fully merged portvariants: universal +
499:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXext
500:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
501:debug:main adding the default universal variant
502:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
503:debug:main Executing variant universal provides universal
504:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
505:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
506:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
507:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
508:debug:main No need to upgrade! xorg-libXext 1.3.3_0 >= xorg-libXext 1.3.3_0
509:debug:main epoch: in tree: 0 installed: 0
510:debug:main xorg-inputproto 2.3.1_0 exists in the ports tree
511:debug:main xorg-inputproto 2.3.1_0  is the latest installed
512:debug:main xorg-inputproto 2.3.1_0  is active
513:debug:main Merging existing variants '' into variants
514:debug:main new fully merged portvariants:
515:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-inputproto
516:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
517:debug:main only one arch supported, so not adding the default universal variant
518:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
519:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
520:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
521:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
522:debug:main No need to upgrade! xorg-inputproto 2.3.1_0 >= xorg-inputproto 2.3.1_0
523:debug:main epoch: in tree: 0 installed: 0
524:debug:main xorg-libXmu 1.1.2_0 exists in the ports tree
525:debug:main xorg-libXmu 1.1.2_0 +universal is the latest installed
526:debug:main xorg-libXmu 1.1.2_0 +universal is active
527:debug:main Merging existing variants '+universal' into variants
528:debug:main new fully merged portvariants: universal +
529:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXmu
530:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
531:debug:main adding the default universal variant
532:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
533:debug:main Executing variant universal provides universal
534:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
535:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
536:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
537:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
538:debug:main No need to upgrade! xorg-libXmu 1.1.2_0 >= xorg-libXmu 1.1.2_0
539:debug:main epoch: in tree: 0 installed: 0
540:debug:main xorg-libXt 1.1.4_0 exists in the ports tree
541:debug:main xorg-libXt 1.1.4_0 +universal is the latest installed
542:debug:main xorg-libXt 1.1.4_0 +universal is active
543:debug:main Merging existing variants '+universal' into variants
544:debug:main new fully merged portvariants: universal +
545:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXt
546:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
547:debug:main adding the default universal variant
548:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
549:debug:main Executing variant universal provides universal
550:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
551:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
552:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
553:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
554:debug:main No need to upgrade! xorg-libXt 1.1.4_0 >= xorg-libXt 1.1.4_0
555:debug:main epoch: in tree: 0 installed: 0
556:debug:main xorg-libsm 1.2.1_0 exists in the ports tree
557:debug:main xorg-libsm 1.2.1_0 +universal is the latest installed
558:debug:main xorg-libsm 1.2.1_0 +universal is active
559:debug:main Merging existing variants '+universal' into variants
560:debug:main new fully merged portvariants: universal +
561:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libsm
562:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
563:debug:main adding the default universal variant
564:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
565:debug:main Executing variant universal provides universal
566:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
567:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
568:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
569:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
570:debug:main No need to upgrade! xorg-libsm 1.2.1_0 >= xorg-libsm 1.2.1_0
571:debug:main epoch: in tree: 0 installed: 0
572:debug:main xorg-libice 1.0.8_0 exists in the ports tree
573:debug:main xorg-libice 1.0.8_0 +universal is the latest installed
574:debug:main xorg-libice 1.0.8_0 +universal is active
575:debug:main Merging existing variants '+universal' into variants
576:debug:main new fully merged portvariants: universal +
577:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libice
578:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
579:debug:main adding the default universal variant
580:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
581:debug:main Executing variant universal provides universal
582:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
583:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
584:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
585:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
586:debug:main No need to upgrade! xorg-libice 1.0.8_0 >= xorg-libice 1.0.8_0
587:debug:main epoch: in tree: 0 installed: 0
588:debug:main xorg-libXrandr 1.4.2_0 exists in the ports tree
589:debug:main xorg-libXrandr 1.4.2_0 +universal is the latest installed
590:debug:main xorg-libXrandr 1.4.2_0 +universal is active
591:debug:main Merging existing variants '+universal' into variants
592:debug:main new fully merged portvariants: universal +
593:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXrandr
594:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
595:debug:main adding the default universal variant
596:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
597:debug:main Executing variant universal provides universal
598:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
599:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
600:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
601:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
602:debug:main No need to upgrade! xorg-libXrandr 1.4.2_0 >= xorg-libXrandr 1.4.2_0
603:debug:main epoch: in tree: 0 installed: 0
604:debug:main xrender 0.9.8_0 exists in the ports tree
605:debug:main xrender 0.9.8_0 +universal is the latest installed
606:debug:main xrender 0.9.8_0 +universal is active
607:debug:main Merging existing variants '+universal' into variants
608:debug:main new fully merged portvariants: universal +
609:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xrender
610:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
611:debug:main adding the default universal variant
612:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
613:debug:main Executing variant universal provides universal
614:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
615:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
616:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
617:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
618:debug:main No need to upgrade! xrender 0.9.8_0 >= xrender 0.9.8_0
619:debug:main epoch: in tree: 0 installed: 0
620:debug:main xorg-renderproto 0.11.1_0 exists in the ports tree
621:debug:main xorg-renderproto 0.11.1_0  is the latest installed
622:debug:main xorg-renderproto 0.11.1_0  is active
623:debug:main Merging existing variants '' into variants
624:debug:main new fully merged portvariants:
625:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-renderproto
626:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
627:debug:main only one arch supported, so not adding the default universal variant
628:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
629:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
630:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
631:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
632:debug:main No need to upgrade! xorg-renderproto 0.11.1_0 >= xorg-renderproto 0.11.1_0
633:debug:main epoch: in tree: 0 installed: 0
634:debug:main xorg-randrproto 1.4.0_0 exists in the ports tree
635:debug:main xorg-randrproto 1.4.0_0  is the latest installed
636:debug:main xorg-randrproto 1.4.0_0  is active
637:debug:main Merging existing variants '' into variants
638:debug:main new fully merged portvariants:
639:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-randrproto
640:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
641:debug:main only one arch supported, so not adding the default universal variant
642:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
643:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
644:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
645:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
646:debug:main No need to upgrade! xorg-randrproto 1.4.0_0 >= xorg-randrproto 1.4.0_0
647:debug:main epoch: in tree: 0 installed: 0
648:debug:main xorg-libXxf86vm 1.1.3_0 exists in the ports tree
649:debug:main xorg-libXxf86vm 1.1.3_0 +universal is the latest installed
650:debug:main xorg-libXxf86vm 1.1.3_0 +universal is active
651:debug:main Merging existing variants '+universal' into variants
652:debug:main new fully merged portvariants: universal +
653:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXxf86vm
654:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
655:debug:main adding the default universal variant
656:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
657:debug:main Executing variant universal provides universal
658:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
659:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
660:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
661:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
662:debug:main No need to upgrade! xorg-libXxf86vm 1.1.3_0 >= xorg-libXxf86vm 1.1.3_0
663:debug:main epoch: in tree: 0 installed: 0
664:debug:main xorg-xf86vidmodeproto 2.3.1_0 exists in the ports tree
665:debug:main xorg-xf86vidmodeproto 2.3.1_0  is the latest installed
666:debug:main xorg-xf86vidmodeproto 2.3.1_0  is active
667:debug:main Merging existing variants '' into variants
668:debug:main new fully merged portvariants:
669:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xf86vidmodeproto
670:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
671:debug:main only one arch supported, so not adding the default universal variant
672:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
673:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
674:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
675:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
676:debug:main No need to upgrade! xorg-xf86vidmodeproto 2.3.1_0 >= xorg-xf86vidmodeproto 2.3.1_0
677:debug:main epoch: in tree: 0 installed: 0
678:debug:main freetype 2.5.3_1 exists in the ports tree
679:debug:main freetype 2.5.3_1 +universal is the latest installed
680:debug:main freetype 2.5.3_1 +universal is active
681:debug:main Merging existing variants '+universal' into variants
682:debug:main new fully merged portvariants: universal +
683:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/print/freetype
684:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
685:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
686:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
687:debug:main universal variant already exists, so not adding the default one
688:debug:main Executing variant universal provides universal
689:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
690:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
691:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
692:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
693:debug:main No need to upgrade! freetype 2.5.3_1 >= freetype 2.5.3_1
694:debug:main epoch: in tree: 0 installed: 0
695:debug:main libpng 1.6.13_0 exists in the ports tree
696:debug:main libpng 1.6.13_0 +universal is the latest installed
697:debug:main libpng 1.6.13_0 +universal is active
698:debug:main Merging existing variants '+universal' into variants
699:debug:main new fully merged portvariants: universal +
700:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/libpng
701:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
702:debug:main adding the default universal variant
703:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
704:debug:main Executing variant universal provides universal
705:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
706:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
707:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
708:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
709:debug:main No need to upgrade! libpng 1.6.13_0 >= libpng 1.6.13_0
710:debug:main epoch: in tree: 0 installed: 0
711:debug:main glew 1.11.0_0 exists in the ports tree
712:debug:main glew 1.11.0_0  is the latest installed
713:debug:main glew 1.11.0_0  is active
714:debug:main Merging existing variants '' into variants
715:debug:main new fully merged portvariants:
716:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/glew
717:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
718:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
719:debug:main universal variant already exists, so not adding the default one
720:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
721:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
722:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
723:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
724:debug:main No need to upgrade! glew 1.11.0_0 >= glew 1.11.0_0
725:debug:main epoch: in tree: 0 installed: 0
726:debug:main py27-numpy 1.9.0_0 exists in the ports tree
727:debug:main py27-numpy 1.9.0_0 +universal is the latest installed
728:debug:main py27-numpy 1.9.0_0 +universal is active
729:debug:main Merging existing variants '+universal' into variants
730:debug:main new fully merged portvariants: universal +
731:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy
732:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
733:debug:main Re-registering default for build.cmd
734:debug:main Re-registering default for destroot.cmd
735:debug:main Re-registering default for destroot.destdir
736:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
737:debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
738:debug:main adding the default universal variant
739:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
740:debug:main Executing variant universal provides universal
741:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
742:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
743:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
744:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
745:debug:main No need to upgrade! py27-numpy 1.9.0_0 >= py27-numpy 1.9.0_0
746:debug:main epoch: in tree: 0 installed: 0
747:debug:main fftw-3 3.3.4_0 exists in the ports tree
748:debug:main fftw-3 3.3.4_0 +universal is the latest installed
749:debug:main fftw-3 3.3.4_0 +universal is active
750:debug:main Merging existing variants '+universal' into variants
751:debug:main new fully merged portvariants: universal +
752:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3
753:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
754:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
755:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
756:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
757:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
758:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
759:debug:main Sourcing PortGroup mpi 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/mpi-1.0.tcl
760:debug:main compiler clang 600.0.51 not blacklisted because it doesn't match {clang <= 211.10.1}
761:debug:main universal variant already exists, so not adding the default one
762:debug:main Executing variant universal provides universal
763:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
764:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
765:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
766:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
767:debug:main No need to upgrade! fftw-3 3.3.4_0 >= fftw-3 3.3.4_0
768:debug:main epoch: in tree: 0 installed: 0
769:debug:main py27-nose 1.3.1_0 exists in the ports tree
770:debug:main py27-nose 1.3.1_0  is the latest installed
771:debug:main py27-nose 1.3.1_0  is active
772:debug:main Merging existing variants '' into variants
773:debug:main new fully merged portvariants:
774:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-nose
775:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
776:debug:main Re-registering default for build.cmd
777:debug:main Re-registering default for destroot.cmd
778:debug:main Re-registering default for destroot.destdir
779:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
780:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
781:debug:main only one arch supported, so not adding the default universal variant
782:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
783:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
784:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
785:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
786:debug:main No need to upgrade! py27-nose 1.3.1_0 >= py27-nose 1.3.1_0
787:debug:main epoch: in tree: 0 installed: 0
788:debug:main py27-setuptools 6.1_0 exists in the ports tree
789:debug:main py27-setuptools 6.1_0  is the latest installed
790:debug:main py27-setuptools 6.1_0  is active
791:debug:main Merging existing variants '' into variants
792:debug:main new fully merged portvariants:
793:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-setuptools
794:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
795:debug:main Re-registering default for build.cmd
796:debug:main Re-registering default for destroot.cmd
797:debug:main Re-registering default for destroot.destdir
798:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
799:debug:main only one arch supported, so not adding the default universal variant
800:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
801:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
802:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
803:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
804:debug:main No need to upgrade! py27-setuptools 6.1_0 >= py27-setuptools 6.1_0
805:debug:main epoch: in tree: 0 installed: 0
806:debug:main nosetests_select 0.1_0 exists in the ports tree
807:debug:main nosetests_select 0.1_0  is the latest installed
808:debug:main nosetests_select 0.1_0  is active
809:debug:main Merging existing variants '' into variants
810:debug:main new fully merged portvariants:
811:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/nosetests_select
812:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
813:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
814:debug:main universal_variant is false, so not adding the default universal variant
815:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
816:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
817:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
818:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
819:debug:main No need to upgrade! nosetests_select 0.1_0 >= nosetests_select 0.1_0
820:debug:main epoch: in tree: 0 installed: 0
821:debug:main py27-cython 0.21_0 exists in the ports tree
822:debug:main py27-cython 0.21_0 +universal is the latest installed
823:debug:main py27-cython 0.21_0 +universal is active
824:debug:main Merging existing variants '+universal' into variants
825:debug:main new fully merged portvariants: universal +
826:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-cython
827:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
828:debug:main Re-registering default for build.cmd
829:debug:main Re-registering default for destroot.cmd
830:debug:main Re-registering default for destroot.destdir
831:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
832:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
833:debug:main adding the default universal variant
834:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
835:debug:main Executing variant universal provides universal
836:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
837:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
838:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
839:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
840:debug:main No need to upgrade! py27-cython 0.21_0 >= py27-cython 0.21_0
841:debug:main epoch: in tree: 0 installed: 0
842:debug:main cython_select 0.1_0 exists in the ports tree
843:debug:main cython_select 0.1_0  is the latest installed
844:debug:main cython_select 0.1_0  is active
845:debug:main Merging existing variants '' into variants
846:debug:main new fully merged portvariants:
847:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/cython_select
848:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
849:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
850:debug:main universal_variant is false, so not adding the default universal variant
851:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
852:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
853:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
854:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
855:debug:main No need to upgrade! cython_select 0.1_0 >= cython_select 0.1_0
856:debug:main epoch: in tree: 0 installed: 0
857:debug:main py27-pmw 1.3.3a_0 exists in the ports tree
858:debug:main py27-pmw 1.3.3a_0  is the latest installed
859:debug:main py27-pmw 1.3.3a_0  is active
860:debug:main Merging existing variants '' into variants
861:debug:main new fully merged portvariants:
862:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-pmw
863:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
864:debug:main Re-registering default for build.cmd
865:debug:main Re-registering default for destroot.cmd
866:debug:main Re-registering default for destroot.destdir
867:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
868:debug:main only one arch supported, so not adding the default universal variant
869:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
870:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
871:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
872:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
873:debug:main No need to upgrade! py27-pmw 1.3.3a_0 >= py27-pmw 1.3.3a_0
874:debug:main epoch: in tree: 0 installed: 0
875:debug:main py27-tkinter 2.7.8_2 exists in the ports tree
876:debug:main py27-tkinter 2.7.8_2  is the latest installed
877:debug:main py27-tkinter 2.7.8_2  is active
878:debug:main Merging existing variants '' into variants
879:debug:main new fully merged portvariants:
880:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-tkinter
881:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
882:debug:main Re-registering default for build.cmd
883:debug:main Re-registering default for destroot.cmd
884:debug:main Re-registering default for destroot.destdir
885:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
886:debug:main adding the default universal variant
887:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
888:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
889:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
890:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
891:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
892:debug:main No need to upgrade! py27-tkinter 2.7.8_2 >= py27-tkinter 2.7.8_2
893:debug:main epoch: in tree: 0 installed: 0
894:debug:main tk 8.6.1_1 exists in the ports tree
895:debug:main tk 8.6.1_1  is the latest installed
896:debug:main tk 8.6.1_1  is active
897:debug:main Merging existing variants '-quartz' into variants
898:debug:main new fully merged portvariants: quartz -
899:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/tk
900:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
901:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
902:debug:main adding the default universal variant
903:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
904:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
905:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
906:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
907:debug:main No need to upgrade! tk 8.6.1_1 >= tk 8.6.1_1
908:debug:main epoch: in tree: 0 installed: 0
909:debug:main tcl 8.6.1_0 exists in the ports tree
910:debug:main tcl 8.6.1_0 +threads is the latest installed
911:debug:main tcl 8.6.1_0 +threads is active
912:debug:main Merging existing variants '+threads-corefoundation' into variants
913:debug:main new fully merged portvariants: corefoundation - threads +
914:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/tcl
915:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
916:debug:main adding the default universal variant
917:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
918:debug:main Executing variant threads provides threads
919:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
920:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
921:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
922:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
923:debug:main No need to upgrade! tcl 8.6.1_0 >= tcl 8.6.1_0
924:debug:main epoch: in tree: 0 installed: 0
925:debug:main Xft2 2.3.2_0 exists in the ports tree
926:debug:main Xft2 2.3.2_0 +universal is the latest installed
927:debug:main Xft2 2.3.2_0 +universal is active
928:debug:main Merging existing variants '+universal' into variants
929:debug:main new fully merged portvariants: universal +
930:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/Xft2
931:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
932:debug:main adding the default universal variant
933:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
934:debug:main Executing variant universal provides universal
935:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
936:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
937:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
938:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
939:debug:main No need to upgrade! Xft2 2.3.2_0 >= Xft2 2.3.2_0
940:debug:main epoch: in tree: 0 installed: 0
941:debug:main fontconfig 2.11.1_0 exists in the ports tree
942:debug:main fontconfig 2.11.1_0 +universal is the latest installed
943:debug:main fontconfig 2.11.1_0 +universal is active
944:debug:main Merging existing variants '+universal' into variants
945:debug:main new fully merged portvariants: universal +
946:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/graphics/fontconfig
947:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
948:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
949:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
950:debug:main universal variant already exists, so not adding the default one
951:debug:main Executing variant universal provides universal
952:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
953:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
954:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
955:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
956:debug:main No need to upgrade! fontconfig 2.11.1_0 >= fontconfig 2.11.1_0
957:debug:main epoch: in tree: 0 installed: 0
958:debug:main xorg-libXScrnSaver 1.2.2_0 exists in the ports tree
959:debug:main xorg-libXScrnSaver 1.2.2_0  is the latest installed
960:debug:main xorg-libXScrnSaver 1.2.2_0  is active
961:debug:main Merging existing variants '' into variants
962:debug:main new fully merged portvariants:
963:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXScrnSaver
964:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
965:debug:main adding the default universal variant
966:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
967:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
968:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
969:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
970:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
971:debug:main No need to upgrade! xorg-libXScrnSaver 1.2.2_0 >= xorg-libXScrnSaver 1.2.2_0
972:debug:main epoch: in tree: 0 installed: 0
973:debug:main xorg-scrnsaverproto 1.2.2_0 exists in the ports tree
974:debug:main xorg-scrnsaverproto 1.2.2_0  is the latest installed
975:debug:main xorg-scrnsaverproto 1.2.2_0  is active
976:debug:main Merging existing variants '' into variants
977:debug:main new fully merged portvariants:
978:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-scrnsaverproto
979:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
980:debug:main only one arch supported, so not adding the default universal variant
981:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
982:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
983:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
984:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
985:debug:main No need to upgrade! xorg-scrnsaverproto 1.2.2_0 >= xorg-scrnsaverproto 1.2.2_0
986:debug:main epoch: in tree: 0 installed: 0
987:debug:main py27-scipy 0.14.0_0 exists in the ports tree
988:debug:main py27-scipy 0.14.0_0 +gcc48 is the latest installed
989:debug:main py27-scipy 0.14.0_0 +gcc48 is active
990:debug:main Merging existing variants '+gcc48' into variants
991:debug:main new fully merged portvariants: gcc48 +
992:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-scipy
993:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
994:debug:main Re-registering default for build.cmd
995:debug:main Re-registering default for destroot.cmd
996:debug:main Re-registering default for destroot.destdir
997:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
998:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
999:debug:main universal_variant is false, so not adding the default universal variant
1000:debug:main Executing variant gcc48 provides gcc48
1001:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1002:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1003:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1004:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1005:debug:main No need to upgrade! py27-scipy 0.14.0_0 >= py27-scipy 0.14.0_0
1006:debug:main epoch: in tree: 20120107 installed: 20120107
1007:debug:main SuiteSparse 4.2.1_3 exists in the ports tree
1008:debug:main SuiteSparse 4.2.1_3  is the latest installed
1009:debug:main SuiteSparse 4.2.1_3  is active
1010:debug:main Merging existing variants '' into variants
1011:debug:main new fully merged portvariants:
1012:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/SuiteSparse
1013:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1014:debug:main Sourcing PortGroup active_variants 1.1 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/active_variants-1.1.tcl
1015:debug:main Sourcing PortGroup compilers 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compilers-1.0.tcl
1016:debug:main adding the default universal variant
1017:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1018:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1019:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1020:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1021:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1022:debug:main No need to upgrade! SuiteSparse 4.2.1_3 >= SuiteSparse 4.2.1_3
1023:debug:main epoch: in tree: 0 installed: 0
1024:debug:main swig-python 3.0.2_0 exists in the ports tree
1025:debug:main swig-python 3.0.2_0  is the latest installed
1026:debug:main swig-python 3.0.2_0  is active
1027:debug:main Merging existing variants '' into variants
1028:debug:main new fully merged portvariants:
1029:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/swig
1030:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1031:debug:main adding the default universal variant
1032:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1033:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1034:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1035:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1036:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1037:debug:main No need to upgrade! swig-python 3.0.2_0 >= swig-python 3.0.2_0
1038:debug:main epoch: in tree: 0 installed: 0
1039:debug:main swig 3.0.2_0 exists in the ports tree
1040:debug:main swig 3.0.2_0  is the latest installed
1041:debug:main swig 3.0.2_0  is active
1042:debug:main Merging existing variants '' into variants
1043:debug:main new fully merged portvariants:
1044:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/swig
1045:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1046:debug:main adding the default universal variant
1047:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1048:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1049:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1050:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1051:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1052:debug:main No need to upgrade! swig 3.0.2_0 >= swig 3.0.2_0
1053:debug:main epoch: in tree: 0 installed: 0
1054:debug:main pcre 8.35_0 exists in the ports tree
1055:debug:main pcre 8.35_0  is the latest installed
1056:debug:main pcre 8.35_0  is active
1057:debug:main Merging existing variants '' into variants
1058:debug:main new fully merged portvariants:
1059:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/pcre
1060:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1061:debug:main adding the default universal variant
1062:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1063:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1064:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1065:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1066:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1067:debug:main No need to upgrade! pcre 8.35_0 >= pcre 8.35_0
1068:debug:main epoch: in tree: 2 installed: 2
1069:debug:main libgcc 4.9.1_0 exists in the ports tree
1070:debug:main libgcc 4.9.1_0  is the latest installed
1071:debug:main libgcc 4.9.1_0  is active
1072:debug:main Merging existing variants '' into variants
1073:debug:main new fully merged portvariants:
1074:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/gcc49
1075:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1076:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
1077:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
1078:debug:main Sourcing PortGroup conflicts_build 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/conflicts_build-1.0.tcl
1079:debug:main compiler llvm-gcc-4.2 blacklisted because it's not installed or it doesn't work
1080:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1081:debug:main universal variant already exists, so not adding the default one
1082:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1083:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1084:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1085:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1086:debug:main No need to upgrade! libgcc 4.9.1_0 >= libgcc 4.9.1_0
1087:debug:main epoch: in tree: 0 installed: 0
1088:debug:main gmp 6.0.0_1 exists in the ports tree
1089:debug:main gmp 6.0.0_1 +universal is the latest installed
1090:debug:main gmp 6.0.0_1 +universal is active
1091:debug:main Merging existing variants '+universal' into variants
1092:debug:main new fully merged portvariants: universal +
1093:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gmp
1094:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1095:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1096:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1097:debug:main universal variant already exists, so not adding the default one
1098:debug:main Executing variant universal provides universal
1099:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1100:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1101:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1102:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1103:debug:main No need to upgrade! gmp 6.0.0_1 >= gmp 6.0.0_1
1104:debug:main epoch: in tree: 0 installed: 0
1105:debug:main mpfr 3.1.2-p10_0 exists in the ports tree
1106:debug:main mpfr 3.1.2-p10_0  is the latest installed
1107:debug:main mpfr 3.1.2-p10_0  is active
1108:debug:main Merging existing variants '' into variants
1109:debug:main new fully merged portvariants:
1110:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/mpfr
1111:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1112:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1113:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1114:debug:main universal variant already exists, so not adding the default one
1115:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1116:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1117:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1118:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1119:debug:main No need to upgrade! mpfr 3.1.2-p10_0 >= mpfr 3.1.2-p10_0
1120:debug:main epoch: in tree: 0 installed: 0
1121:debug:main libmpc 1.0.2_0 exists in the ports tree
1122:debug:main libmpc 1.0.2_0  is the latest installed
1123:debug:main libmpc 1.0.2_0  is active
1124:debug:main Merging existing variants '' into variants
1125:debug:main new fully merged portvariants:
1126:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libmpc
1127:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1128:debug:main adding the default universal variant
1129:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1130:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1131:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1132:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1133:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1134:debug:main No need to upgrade! libmpc 1.0.2_0 >= libmpc 1.0.2_0
1135:debug:main epoch: in tree: 1 installed: 1
1136:debug:main cloog 0.18.2_0 exists in the ports tree
1137:debug:main cloog 0.18.2_0  is the latest installed
1138:debug:main cloog 0.18.2_0  is active
1139:debug:main Merging existing variants '' into variants
1140:debug:main new fully merged portvariants:
1141:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cloog
1142:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1143:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1144:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1145:debug:main universal variant already exists, so not adding the default one
1146:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1147:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1148:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1149:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1150:debug:main No need to upgrade! cloog 0.18.2_0 >= cloog 0.18.2_0
1151:debug:main epoch: in tree: 2 installed: 2
1152:debug:main isl 0.13_0 exists in the ports tree
1153:debug:main isl 0.13_0  is the latest installed
1154:debug:main isl 0.13_0  is active
1155:debug:main Merging existing variants '' into variants
1156:debug:main new fully merged portvariants:
1157:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/isl
1158:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1159:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1160:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1161:debug:main universal variant already exists, so not adding the default one
1162:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1163:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1164:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1165:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1166:debug:main No need to upgrade! isl 0.13_0 >= isl 0.13_0
1167:debug:main epoch: in tree: 1 installed: 1
1168:debug:main ld64 236.3_1 exists in the ports tree
1169:debug:main ld64 236.3_1 +llvm33 is the latest installed
1170:debug:main ld64 236.3_1 +llvm33 is active
1171:debug:main Merging existing variants '+llvm33' into variants
1172:debug:main new fully merged portvariants: llvm33 +
1173:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
1174:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1175:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1176:debug:main universal variant already exists, so not adding the default one
1177:debug:main Executing variant llvm33 provides llvm33
1178:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1179:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1180:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1181:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1182:debug:main No need to upgrade! ld64 236.3_1 >= ld64 236.3_1
1183:debug:main epoch: in tree: 1 installed: 1
1184:debug:main llvm-3.3 3.3_4 exists in the ports tree
1185:debug:main llvm-3.3 3.3_4  is the latest installed
1186:debug:main llvm-3.3 3.3_4  is active
1187:debug:main Merging existing variants '' into variants
1188:debug:main new fully merged portvariants:
1189:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3
1190:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1191:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
1192:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1193:debug:main universal variant already exists, so not adding the default one
1194:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1195:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1196:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1197:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1198:debug:main No need to upgrade! llvm-3.3 3.3_4 >= llvm-3.3 3.3_4
1199:debug:main epoch: in tree: 0 installed: 0
1200:debug:main libffi 3.1_4 exists in the ports tree
1201:debug:main libffi 3.1_4 +universal is the latest installed
1202:debug:main libffi 3.1_4 +universal is active
1203:debug:main Merging existing variants '+universal' into variants
1204:debug:main new fully merged portvariants: universal +
1205:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
1206:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1207:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1208:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
1209:debug:main universal variant already exists, so not adding the default one
1210:debug:main Executing variant universal provides universal
1211:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1212:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1213:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1214:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1215:debug:main No need to upgrade! libffi 3.1_4 >= libffi 3.1_4
1216:debug:main epoch: in tree: 0 installed: 0
1217:debug:main perl5 5.12.4_0 exists in the ports tree
1218:debug:main perl5 5.12.4_0 +perl5_16 is the latest installed
1219:debug:main perl5 5.12.4_0 +perl5_16 is active
1220:debug:main Merging existing variants '+perl5_16' into variants
1221:debug:main new fully merged portvariants: perl5_16 +
1222:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5
1223:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1224:debug:main universal_variant is false, so not adding the default universal variant
1225:debug:main Executing variant perl5_16 provides perl5_16
1226:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1227:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1228:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1229:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1230:debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0
1231:debug:main epoch: in tree: 0 installed: 0
1232:debug:main perl5.16 5.16.3_0 exists in the ports tree
1233:debug:main perl5.16 5.16.3_0 +universal is the latest installed
1234:debug:main perl5.16 5.16.3_0 +universal is active
1235:debug:main Merging existing variants '+universal' into variants
1236:debug:main new fully merged portvariants: universal +
1237:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.16
1238:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1239:debug:main adding the default universal variant
1240:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1241:debug:main Executing variant universal provides universal
1242:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1243:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1244:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1245:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1246:debug:main No need to upgrade! perl5.16 5.16.3_0 >= perl5.16 5.16.3_0
1247:debug:main epoch: in tree: 0 installed: 0
1248:debug:main gdbm 1.11_0 exists in the ports tree
1249:debug:main gdbm 1.11_0  is the latest installed
1250:debug:main gdbm 1.11_0 +universal is active
1251:debug:main Merging existing variants '+universal' into variants
1252:debug:main new fully merged portvariants: universal +
1253:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm
1254:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1255:debug:main adding the default universal variant
1256:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1257:debug:main Executing variant universal provides universal
1258:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1259:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1260:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1261:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1262:debug:main No need to upgrade! gdbm 1.11_0 >= gdbm 1.11_0
1263:debug:main epoch: in tree: 0 installed: 0
1264:debug:main llvm_select 1.0_0 exists in the ports tree
1265:debug:main llvm_select 1.0_0  is the latest installed
1266:debug:main llvm_select 1.0_0  is active
1267:debug:main Merging existing variants '' into variants
1268:debug:main new fully merged portvariants:
1269:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
1270:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1271:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
1272:debug:main universal_variant is false, so not adding the default universal variant
1273:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1274:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1275:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1276:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1277:debug:main No need to upgrade! llvm_select 1.0_0 >= llvm_select 1.0_0
1278:debug:main epoch: in tree: 0 installed: 0
1279:debug:main cctools 855_1 exists in the ports tree
1280:debug:main cctools 855_1 +llvm33 is the latest installed
1281:debug:main cctools 855_1 +llvm33 is active
1282:debug:main Merging existing variants '+llvm33' into variants
1283:debug:main new fully merged portvariants: llvm33 +
1284:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools
1285:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1286:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1287:debug:main universal variant already exists, so not adding the default one
1288:debug:main Executing variant llvm33 provides llvm33
1289:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1290:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1291:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1292:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1293:debug:main No need to upgrade! cctools 855_1 >= cctools 855_1
1294:debug:main epoch: in tree: 0 installed: 0
1295:debug:main cctools-headers 855_0 exists in the ports tree
1296:debug:main cctools-headers 855_0  is the latest installed
1297:debug:main cctools-headers 855_0  is active
1298:debug:main Merging existing variants '' into variants
1299:debug:main new fully merged portvariants:
1300:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cctools-headers
1301:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1302:debug:main universal_variant is false, so not adding the default universal variant
1303:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1304:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1305:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1306:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1307:debug:main No need to upgrade! cctools-headers 855_0 >= cctools-headers 855_0
1308:debug:main epoch: in tree: 0 installed: 0
1309:debug:main gcc_select 0.1_8 exists in the ports tree
1310:debug:main gcc_select 0.1_8  is the latest installed
1311:debug:main gcc_select 0.1_8  is active
1312:debug:main Merging existing variants '' into variants
1313:debug:main new fully merged portvariants:
1314:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/gcc_select
1315:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1316:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
1317:debug:main universal_variant is false, so not adding the default universal variant
1318:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1319:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1320:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1321:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1322:debug:main No need to upgrade! gcc_select 0.1_8 >= gcc_select 0.1_8
1323:debug:main epoch: in tree: 0 installed: 0
1324:debug:main xdpyinfo 1.3.1_0 exists in the ports tree
1325:debug:main xdpyinfo 1.3.1_0  is the latest installed
1326:debug:main xdpyinfo 1.3.1_0  is active
1327:debug:main Merging existing variants '' into variants
1328:debug:main new fully merged portvariants:
1329:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xdpyinfo
1330:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1331:debug:main adding the default universal variant
1332:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1333:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1334:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1335:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1336:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1337:debug:main No need to upgrade! xdpyinfo 1.3.1_0 >= xdpyinfo 1.3.1_0
1338:debug:main epoch: in tree: 0 installed: 0
1339:debug:main xorg-libXinerama 1.1.3_0 exists in the ports tree
1340:debug:main xorg-libXinerama 1.1.3_0 +universal is the latest installed
1341:debug:main xorg-libXinerama 1.1.3_0 +universal is active
1342:debug:main Merging existing variants '+universal' into variants
1343:debug:main new fully merged portvariants: universal +
1344:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXinerama
1345:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1346:debug:main adding the default universal variant
1347:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1348:debug:main Executing variant universal provides universal
1349:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1350:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1351:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1352:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1353:debug:main No need to upgrade! xorg-libXinerama 1.1.3_0 >= xorg-libXinerama 1.1.3_0
1354:debug:main epoch: in tree: 0 installed: 0
1355:debug:main xorg-xineramaproto 1.2.1_0 exists in the ports tree
1356:debug:main xorg-xineramaproto 1.2.1_0  is the latest installed
1357:debug:main xorg-xineramaproto 1.2.1_0  is active
1358:debug:main Merging existing variants '' into variants
1359:debug:main new fully merged portvariants:
1360:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-xineramaproto
1361:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1362:debug:main only one arch supported, so not adding the default universal variant
1363:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1364:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1365:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1366:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1367:debug:main No need to upgrade! xorg-xineramaproto 1.2.1_0 >= xorg-xineramaproto 1.2.1_0
1368:debug:main epoch: in tree: 0 installed: 0
1369:debug:main xorg-libXtst 1.2.2_0 exists in the ports tree
1370:debug:main xorg-libXtst 1.2.2_0 +universal is the latest installed
1371:debug:main xorg-libXtst 1.2.2_0 +universal is active
1372:debug:main Merging existing variants '+universal' into variants
1373:debug:main new fully merged portvariants: universal +
1374:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libXtst
1375:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1376:debug:main adding the default universal variant
1377:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1378:debug:main Executing variant universal provides universal
1379:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1380:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1381:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1382:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1383:debug:main No need to upgrade! xorg-libXtst 1.2.2_0 >= xorg-libXtst 1.2.2_0
1384:debug:main epoch: in tree: 0 installed: 0
1385:debug:main xorg-recordproto 1.14.2_0 exists in the ports tree
1386:debug:main xorg-recordproto 1.14.2_0  is the latest installed
1387:debug:main xorg-recordproto 1.14.2_0  is active
1388:debug:main Merging existing variants '' into variants
1389:debug:main new fully merged portvariants:
1390:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-recordproto
1391:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1392:debug:main only one arch supported, so not adding the default universal variant
1393:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1394:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1395:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1396:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1397:debug:main No need to upgrade! xorg-recordproto 1.14.2_0 >= xorg-recordproto 1.14.2_0
1398:debug:main epoch: in tree: 0 installed: 0
1399:debug:main xorg-libdmx 1.1.3_0 exists in the ports tree
1400:debug:main xorg-libdmx 1.1.3_0  is the latest installed
1401:debug:main xorg-libdmx 1.1.3_0  is active
1402:debug:main Merging existing variants '' into variants
1403:debug:main new fully merged portvariants:
1404:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-libdmx
1405:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1406:debug:main adding the default universal variant
1407:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
1408:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1409:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1410:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1411:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1412:debug:main No need to upgrade! xorg-libdmx 1.1.3_0 >= xorg-libdmx 1.1.3_0
1413:debug:main epoch: in tree: 0 installed: 0
1414:debug:main xorg-dmxproto 2.3.1_0 exists in the ports tree
1415:debug:main xorg-dmxproto 2.3.1_0  is the latest installed
1416:debug:main xorg-dmxproto 2.3.1_0  is active
1417:debug:main Merging existing variants '' into variants
1418:debug:main new fully merged portvariants:
1419:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/x11/xorg-dmxproto
1420:debug:main OS darwin/13.4.0 (Mac OS X 10.9) arch i386
1421:debug:main only one arch supported, so not adding the default universal variant
1422:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
1423:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
1424:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
1425:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
1426:debug:main No need to upgrade! xorg-dmxproto 2.3.1_0 >= xorg-dmxproto 2.3.1_0
1427:msg:main --->  Computing dependencies for pymol:info:main .:debug:main pymol has no conflicts
1428:debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
1429:debug:main Searching for dependency: subversion
1430:debug:main Didn't find receipt, going to depspec regex for: subversion
1431:debug:main Found Dependency: path: /usr/bin filename: svn regex: ^svn$
1432:debug:main Searching for dependency: python27
1433:debug:main Found Dependency: receipt exists for python27
1434:debug:main Searching for dependency: freeglut
1435:debug:main Found Dependency: receipt exists for freeglut
1436:debug:main Searching for dependency: freetype
1437:debug:main Found Dependency: receipt exists for freetype
1438:debug:main Searching for dependency: glew
1439:debug:main Found Dependency: receipt exists for glew
1440:debug:main Searching for dependency: libpng
1441:debug:main Found Dependency: receipt exists for libpng
1442:debug:main Searching for dependency: mesa
1443:debug:main Found Dependency: receipt exists for mesa
1444:debug:main Searching for dependency: py27-numpy
1445:debug:main Found Dependency: receipt exists for py27-numpy
1446:debug:main Searching for dependency: py27-pmw
1447:debug:main Found Dependency: receipt exists for py27-pmw
1448:debug:main Searching for dependency: py27-scipy
1449:debug:main Found Dependency: receipt exists for py27-scipy
1450:debug:main Searching for dependency: py27-tkinter
1451:debug:main Found Dependency: receipt exists for py27-tkinter
1452:debug:main Searching for dependency: xdpyinfo
1453:debug:main Found Dependency: receipt exists for xdpyinfo
1454:msg:main
1455:debug:main Tracelib Sandbox is:
1456:debug:main     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
1457:debug:main     /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
1458:debug:main     /opt/local/var/macports/distfiles/pymol
1459:debug:main     /tmp
1460:debug:main     /private/tmp
1461:debug:main     /var/tmp
1462:debug:main     /private/var/tmp
1463:debug:main     /var/folders
1464:debug:main     /private/var/folders
1465:debug:main     /var/empty
1466:debug:main     /private/var/empty
1467:debug:main     /var/run
1468:debug:main     /private/var/run
1469:debug:main     /var/db/xcode_select_link
1470:debug:main     /private/var/db/xcode_select_link
1471:debug:main     /var/db/mds
1472:debug:main     /private/var/db/mds
1473:debug:main     /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
1474:debug:main     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
1475:debug:main     /Library/Caches/com.apple.Xcode
1476:debug:main     /dev
1477:debug:main     /etc/passwd
1478:debug:main     /etc/groups
1479:debug:main     /etc/localtime
1480:debug:main     /Applications/Xcode.app
1481:debug:main     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
1482:debug:main     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
1483:debug:main     /opt/local/var/macports/build/.ccache
1484:debug:main Tracemode will respect recursively collected port dependencies:
1485:debug:main Executing org.macports.main (pymol)
1486:debug:main changing euid/egid - current euid: 0 - current egid: 0
1487:debug:main egid changed to: 501
1488:debug:main euid changed to: 502
1489:debug:archivefetch archivefetch phase started at Wed Oct 15 13:35:46 MDT 2014
1490:msg:archivefetch --->  Fetching archive for pymol
1491:debug:archivefetch Tracelib Sandbox is:
1492:debug:archivefetch     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
1493:debug:archivefetch     /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
1494:debug:archivefetch     /opt/local/var/macports/distfiles/pymol
1495:debug:archivefetch     /tmp
1496:debug:archivefetch     /private/tmp
1497:debug:archivefetch     /var/tmp
1498:debug:archivefetch     /private/var/tmp
1499:debug:archivefetch     /var/folders
1500:debug:archivefetch     /private/var/folders
1501:debug:archivefetch     /var/empty
1502:debug:archivefetch     /private/var/empty
1503:debug:archivefetch     /var/run
1504:debug:archivefetch     /private/var/run
1505:debug:archivefetch     /var/db/xcode_select_link
1506:debug:archivefetch     /private/var/db/xcode_select_link
1507:debug:archivefetch     /var/db/mds
1508:debug:archivefetch     /private/var/db/mds
1509:debug:archivefetch     /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
1510:debug:archivefetch     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
1511:debug:archivefetch     /Library/Caches/com.apple.Xcode
1512:debug:archivefetch     /dev
1513:debug:archivefetch     /etc/passwd
1514:debug:archivefetch     /etc/groups
1515:debug:archivefetch     /etc/localtime
1516:debug:archivefetch     /Applications/Xcode.app
1517:debug:archivefetch     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
1518:debug:archivefetch     /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
1519:debug:archivefetch     /opt/local/var/macports/build/.ccache
1520:debug:archivefetch Tracemode will respect recursively collected port dependencies:
1521:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
1522:debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: python27 freeglut freetype glew libpng mesa py27-numpy py27-pmw py27-scipy py27-tkinter xdpyinfo
1523:debug:archivefetch Ignoring active_variants requirement for tcl because archivefetch-type install only considers depends_lib depends_run and those do not contain tcl
1524:debug:archivefetch Ignoring active_variants requirement for tk because archivefetch-type install only considers depends_lib depends_run and those do not contain tk
1525:debug:archivefetch Executing org.macports.archivefetch (pymol)
1526:debug:archivefetch euid/egid changed to: 0/0
1527:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
1528:debug:archivefetch euid/egid changed to: 502/501
1529:info:archivefetch --->  pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
1530:msg:archivefetch --->  Attempting to fetch pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 from http://packages.macports.org/pymol
1531:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
1532:msg:archivefetch --->  Attempting to fetch pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/pymol
1533:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
1534:msg:archivefetch --->  Attempting to fetch pymol-1.7.1.1_1.darwin_13.x86_64.tbz2 from http://lil.fr.packages.macports.org/pymol
1535:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
1536:debug:archivefetch Privilege de-escalation not attempted as not running as root.
1537:debug:fetch fetch phase started at Wed Oct 15 13:35:47 MDT 2014
1538:notice:fetch --->  Fetching distfiles for pymol
1539:debug:fetch Tracelib Sandbox is:
1540:debug:fetch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
1541:debug:fetch    /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
1542:debug:fetch    /opt/local/var/macports/distfiles/pymol
1543:debug:fetch    /tmp
1544:debug:fetch    /private/tmp
1545:debug:fetch    /var/tmp
1546:debug:fetch    /private/var/tmp
1547:debug:fetch    /var/folders
1548:debug:fetch    /private/var/folders
1549:debug:fetch    /var/empty
1550:debug:fetch    /private/var/empty
1551:debug:fetch    /var/run
1552:debug:fetch    /private/var/run
1553:debug:fetch    /var/db/xcode_select_link
1554:debug:fetch    /private/var/db/xcode_select_link
1555:debug:fetch    /var/db/mds
1556:debug:fetch    /private/var/db/mds
1557:debug:fetch    /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
1558:debug:fetch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
1559:debug:fetch    /Library/Caches/com.apple.Xcode
1560:debug:fetch    /dev
1561:debug:fetch    /etc/passwd
1562:debug:fetch    /etc/groups
1563:debug:fetch    /etc/localtime
1564:debug:fetch    /Applications/Xcode.app
1565:debug:fetch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
1566:debug:fetch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
1567:debug:fetch    /opt/local/var/macports/build/.ccache
1568:debug:fetch Found Dependency: path: /usr/bin filename: svn regex: ^svn$
1569:debug:fetch Tracemode will respect recursively collected port dependencies:
1570:debug:fetch Executing org.macports.fetch (pymol)
1571:debug:fetch Environment:
1572CC_PRINT_OPTIONS='YES'
1573CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
1574CPATH='/opt/local/include'
1575LIBRARY_PATH='/opt/local/lib'
1576MACOSX_DEPLOYMENT_TARGET='10.9'
1577:debug:fetch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://svn.code.sf.net/p/pymol/code/trunk/pymol@4074'
1578:debug:fetch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://svn.code.sf.net/p/pymol/code/trunk/pymol@4074 2>&1
1579:info:fetch A    pymol
1580:info:fetch A    pymol/test
1581:info:fetch A    pymol/test/headerTest.py
1582:info:fetch A    pymol/test/show
1583:info:fetch A    pymol/test/cyg
1584:info:fetch A    pymol/test/trim.py
1585:info:fetch A    pymol/test/run
1586:info:fetch A    pymol/test/win.py
1587:info:fetch A    pymol/test/inp
1588:info:fetch A    pymol/test/inp/B08.py
1589:info:fetch A    pymol/test/inp/C0200feedback.pml
1590:info:fetch A    pymol/test/inp/C0300session.pml
1591:info:fetch A    pymol/test/inp/M0010load.pml
1592:info:fetch A    pymol/test/inp/C0201extend.pml
1593:info:fetch A    pymol/test/inp/M0025view.pml
1594:info:fetch A    pymol/test/inp/C0740multipdb.pml
1595:info:fetch A    pymol/test/inp/C0050multi.pml
1596:info:fetch A    pymol/test/inp/L0010ccp4read.pml
1597:info:fetch A    pymol/test/inp/C1060controlling.py
1598:info:fetch A    pymol/test/inp/T02.py
1599:info:fetch A    pymol/test/inp/M0001new.pml
1600:info:fetch A    pymol/test/inp/C2000returns.py
1601:info:fetch A    pymol/test/inp/M0053session.pml
1602:info:fetch A    pymol/test/inp/C0170scene.pml
1603:info:fetch A    pymol/test/inp/C1020querying.pml
1604:info:fetch A    pymol/test/inp/M0020multi.pml
1605:info:fetch A    pymol/test/inp/C0060delete.pml
1606:info:fetch A    pymol/test/inp/C0105names.pml
1607:info:fetch A    pymol/test/inp/C1300extras.pml
1608:info:fetch A    pymol/test/inp/C0080create.pml
1609:info:fetch A    pymol/test/inp/C0150alter.pml
1610:info:fetch A    pymol/test/inp/C0800matrices.pml
1611:info:fetch A    pymol/test/inp/L0100isomisc.pml
1612:info:fetch A    pymol/test/inp/C0100select.pml
1613:info:fetch A    pymol/test/inp/B03.py
1614:info:fetch A    pymol/test/inp/C0600util.pml
1615:info:fetch A    pymol/test/inp/C1035wildcards.pml
1616:info:fetch A    pymol/test/inp/B07.py
1617:info:fetch A    pymol/test/inp/C0180embed.pml
1618:info:fetch A    pymol/test/inp/C1200matrix_maps.pml
1619:info:fetch A    pymol/test/inp/C0030pkl.pml
1620:info:fetch A    pymol/test/inp/T01.py
1621:info:fetch A    pymol/test/inp/C0021pdbstr.pml
1622:info:fetch A    pymol/test/inp/M0052session.pml
1623:info:fetch A    pymol/test/inp/L0040isomesh2.pml
1624:info:fetch A    pymol/test/inp/M0021multi.pml
1625:info:fetch A    pymol/test/inp/C0020pdb.pml
1626:info:fetch A    pymol/test/inp/L0200electro.pml
1627:info:fetch A    pymol/test/inp/C0550pseudo.pml
1628:info:fetch A    pymol/test/inp/C1090coulomb.pml
1629:info:fetch A    pymol/test/inp/L0020xplorread.pml
1630:info:fetch A    pymol/test/inp/B02.py
1631:info:fetch A    pymol/test/inp/M0041do.pml
1632:info:fetch A    pymol/test/inp/C1030selecting.pml
1633:info:fetch A    pymol/test/inp/C0027mol2.pml
1634:info:fetch A    pymol/test/inp/C0026sdf.pml
1635:info:fetch A    pymol/test/inp/B06.py
1636:info:fetch A    pymol/test/inp/C0181embed.pml
1637:info:fetch A    pymol/test/inp/C0160get.pml
1638:info:fetch A    pymol/test/inp/C1080isomore.pml
1639:info:fetch A    pymol/test/inp/C1070exporting.pml
1640:info:fetch A    pymol/test/inp/C1010helping.pml
1641:info:fetch A    pymol/test/inp/C0025mol.pml
1642:info:fetch A    pymol/test/inp/C0500misc.pml
1643:info:fetch A    pymol/test/inp/U01.pml
1644:info:fetch A    pymol/test/inp/C0140iterate.pml
1645:info:fetch A    pymol/test/inp/M0051session.pml
1646:info:fetch A    pymol/test/inp/T04.py
1647:info:fetch A    pymol/test/inp/C1100do.py
1648:info:fetch A    pymol/test/inp/C1050fitting.py
1649:info:fetch A    pymol/test/inp/C0700odd.pml
1650:info:fetch A    pymol/test/inp/C1095slice.pml
1651:info:fetch A    pymol/test/inp/B01.py
1652:info:fetch A    pymol/test/inp/B11.py
1653:info:fetch A    pymol/test/inp/C0106order.pml
1654:info:fetch A    pymol/test/inp/C0001quit.pml
1655:info:fetch A    pymol/test/inp/B05.py
1656:info:fetch A    pymol/test/inp/B09.py
1657:info:fetch A    pymol/test/inp/C1040editing.pml
1658:info:fetch A    pymol/test/inp/C0202help_python.pml
1659:info:fetch A    pymol/test/inp/C0070rep.pml
1660:info:fetch A    pymol/test/inp/M0050session.pml
1661:info:fetch A    pymol/test/inp/T03.py
1662:info:fetch A    pymol/test/inp/C0010hello.pml
1663:info:fetch A    pymol/test/inp/C1000viewing.pml
1664:info:fetch A    pymol/test/inp/M0002start.pml
1665:info:fetch A    pymol/test/inp/M0030scene.pml
1666:info:fetch A    pymol/test/inp/C1110matrix_mode.pml
1667:info:fetch A    pymol/test/inp/B10.py
1668:info:fetch A    pymol/test/inp/M0040do.pml
1669:info:fetch A    pymol/test/inp/B04.py
1670:info:fetch A    pymol/test/inp/L0030isomesh.pml
1671:info:fetch A    pymol/test/dat
1672:info:fetch A    pymol/test/dat/small03.mol2
1673:info:fetch A    pymol/test/dat/helix_amber.pdb
1674:info:fetch A    pymol/test/dat/water.pdb
1675:info:fetch A    pymol/test/dat/tiny.pdb
1676:info:fetch A    pymol/test/dat/3al1.r3d
1677:info:fetch A    pymol/test/dat/il2.pdb
1678:info:fetch A    pymol/test/dat/pept.pkl
1679:info:fetch A    pymol/test/dat/small01.mol
1680:info:fetch A    pymol/test/dat/pept.r3d
1681:info:fetch A    pymol/test/dat/ligs3d.sdf
1682:info:fetch A    pymol/test/dat/3al1.pdb
1683:info:fetch A    pymol/test/dat/names.pdb
1684:info:fetch A    pymol/test/dat/embed01.p1m
1685:info:fetch A    pymol/test/dat/1tii.pdb
1686:info:fetch A    pymol/test/dat/embed02.p1m
1687:info:fetch A    pymol/test/dat/odd01.pdb
1688:info:fetch A    pymol/test/dat/embed03.p1m
1689:info:fetch A    pymol/test/dat/pept.pdb
1690:info:fetch A    pymol/test/dat/odd02.pdb
1691:info:fetch A    pymol/test/dat/embed04.p1m
1692:info:fetch A    pymol/test/dat/embed05.p1m
1693:info:fetch A    pymol/test/dat/embed06.p1m
1694:info:fetch A    pymol/test/dat/small02.pdb
1695:info:fetch A    pymol/test/ref
1696:info:fetch A    pymol/test/ref/C0025mol.log
1697:info:fetch A    pymol/test/ref/C0500misc.log
1698:info:fetch A    pymol/test/ref/C0700odd.1.pdb
1699:info:fetch A    pymol/test/ref/C0700odd.2.pdb
1700:info:fetch A    pymol/test/ref/U01.log
1701:info:fetch A    pymol/test/ref/C0140iterate.log
1702:info:fetch A    pymol/test/ref/C0700odd.3.pdb
1703:info:fetch A    pymol/test/ref/M0051session.log
1704:info:fetch A    pymol/test/ref/C0700odd.4.pdb
1705:info:fetch A    pymol/test/ref/C2000returns.log
1706:info:fetch A    pymol/test/ref/C0700odd.5.pdb
1707:info:fetch A    pymol/test/ref/C0700odd.6.pdb
1708:info:fetch A    pymol/test/ref/C0700odd.7.pdb
1709:info:fetch A    pymol/test/ref/C0700odd.8.pdb
1710:info:fetch A    pymol/test/ref/C0700odd.9.pdb
1711:info:fetch A    pymol/test/ref/C1050fitting.log
1712:info:fetch A    pymol/test/ref/C0700odd.log
1713:info:fetch A    pymol/test/ref/C1095slice.log
1714:info:fetch A    pymol/test/ref/C0700odd.A.pdb
1715:info:fetch A    pymol/test/ref/C0700odd.B.pdb
1716:info:fetch A    pymol/test/ref/C0700odd.C.pdb
1717:info:fetch A    pymol/test/ref/C0106order.log
1718:info:fetch A    pymol/test/ref/C0700odd.D.pdb
1719:info:fetch A    pymol/test/ref/C0001quit.log
1720:info:fetch A    pymol/test/ref/C0700odd.E.pdb
1721:info:fetch A    pymol/test/ref/C0700odd.F.pdb
1722:info:fetch A    pymol/test/ref/C1040editing.log
1723:info:fetch A    pymol/test/ref/C0070rep.log
1724:info:fetch A    pymol/test/ref/C0202help_python.log
1725:info:fetch A    pymol/test/ref/C1060controlling.log
1726:info:fetch A    pymol/test/ref/M0050session.log
1727:info:fetch A    pymol/test/ref/C0010hello.log
1728:info:fetch A    pymol/test/ref/M0002start.log
1729:info:fetch A    pymol/test/ref/C1000viewing.log
1730:info:fetch A    pymol/test/ref/M0030scene.log
1731:info:fetch A    pymol/test/ref/C1110matrix_mode.log
1732:info:fetch A    pymol/test/ref/M0040do.log
1733:info:fetch A    pymol/test/ref/L0030isomesh.log
1734:info:fetch A    pymol/test/ref/C0300session.log
1735:info:fetch A    pymol/test/ref/C0200feedback.log
1736:info:fetch A    pymol/test/ref/M0010load.log
1737:info:fetch A    pymol/test/ref/C0201extend.log
1738:info:fetch A    pymol/test/ref/M0025view.log
1739:info:fetch A    pymol/test/ref/C0740multipdb.log
1740:info:fetch A    pymol/test/ref/C0080create.1.pdb
1741:info:fetch A    pymol/test/ref/L0010ccp4read.log
1742:info:fetch A    pymol/test/ref/C0050multi.log
1743:info:fetch A    pymol/test/ref/C0080create.2.pdb
1744:info:fetch A    pymol/test/ref/C0150alter.1.pdb
1745:info:fetch A    pymol/test/ref/T01.log
1746:info:fetch A    pymol/test/ref/M0001new.log
1747:info:fetch A    pymol/test/ref/C1100do.log
1748:info:fetch A    pymol/test/ref/C0700.odd.G.pdb
1749:info:fetch A    pymol/test/ref/M0053session.log
1750:info:fetch A    pymol/test/ref/C0170scene.log
1751:info:fetch A    pymol/test/ref/C0700.odd.H.pdb
1752:info:fetch A    pymol/test/ref/M0020multi.log
1753:info:fetch A    pymol/test/ref/C1020querying.log
1754:info:fetch A    pymol/test/ref/C0060delete.log
1755:info:fetch A    pymol/test/ref/C0105names.log
1756:info:fetch A    pymol/test/ref/C1300extras.log
1757:info:fetch A    pymol/test/ref/C0080create.log
1758:info:fetch A    pymol/test/ref/C0150alter.log
1759:info:fetch A    pymol/test/ref/C0800matrices.log
1760:info:fetch A    pymol/test/ref/C0100select.log
1761:info:fetch A    pymol/test/ref/L0100isomisc.log
1762:info:fetch A    pymol/test/ref/C0600util.log
1763:info:fetch A    pymol/test/ref/C1035wildcards.log
1764:info:fetch A    pymol/test/ref/C0180embed.log
1765:info:fetch A    pymol/test/ref/C1200matrix_maps.log
1766:info:fetch A    pymol/test/ref/C0030pkl.log
1767:info:fetch A    pymol/test/ref/C0021pdbstr.log
1768:info:fetch A    pymol/test/ref/M0052session.log
1769:info:fetch A    pymol/test/ref/L0040isomesh2.log
1770:info:fetch A    pymol/test/ref/C0020pdb.log
1771:info:fetch A    pymol/test/ref/M0021multi.log
1772:info:fetch A    pymol/test/ref/L0200electro.log
1773:info:fetch A    pymol/test/ref/C0550pseudo.log
1774:info:fetch A    pymol/test/ref/C1090coulomb.log
1775:info:fetch A    pymol/test/ref/L0020xplorread.log
1776:info:fetch A    pymol/test/ref/C0030pkl.pdb
1777:info:fetch A    pymol/test/ref/C1030selecting.log
1778:info:fetch A    pymol/test/ref/M0041do.log
1779:info:fetch A    pymol/test/ref/C0027mol2.log
1780:info:fetch A    pymol/test/ref/C0026sdf.log
1781:info:fetch A    pymol/test/ref/C1080isomore.log
1782:info:fetch A    pymol/test/ref/C0160get.log
1783:info:fetch A    pymol/test/ref/C0181embed.log
1784:info:fetch A    pymol/test/ref/C1070exporting.log
1785:info:fetch A    pymol/test/ref/C1010helping.log
1786:info:fetch A    pymol/test/ref/C0020pdb.pdb
1787:info:fetch A    pymol/test/README
1788:info:fetch A    pymol/test/vdiff
1789:info:fetch A    pymol/LICENSE
1790:info:fetch A    pymol/ov
1791:info:fetch A    pymol/ov/src
1792:info:fetch A    pymol/ov/src/Makefile.delsci
1793:info:fetch A    pymol/ov/src/OVContext.h
1794:info:fetch A    pymol/ov/src/OVOneToOne.h
1795:info:fetch A    pymol/ov/src/Makefile.in
1796:info:fetch A    pymol/ov/src/OVOneToAny.c
1797:info:fetch A    pymol/ov/src/OVLexicon.c
1798:info:fetch A    pymol/ov/src/OVOneToAny.h
1799:info:fetch A    pymol/ov/src/ov_utility.c
1800:info:fetch A    pymol/ov/src/OVLexicon.h
1801:info:fetch A    pymol/ov/src/ov_utility.h
1802:info:fetch A    pymol/ov/src/OVreturns.h
1803:info:fetch A    pymol/ov/src/ov_types.h
1804:info:fetch A    pymol/ov/src/OVHeapArray.c
1805:info:fetch A    pymol/ov/src/OVHeap.c
1806:info:fetch A    pymol/ov/src/OVRandom.c
1807:info:fetch A    pymol/ov/src/OVHeapArray.h
1808:info:fetch A    pymol/ov/src/ov_defines.h
1809:info:fetch A    pymol/ov/src/OVHeap.h
1810:info:fetch A    pymol/ov/src/Makefile.am
1811:info:fetch A    pymol/ov/src/OVContext.c
1812:info:fetch A    pymol/ov/src/OVRandom.h
1813:info:fetch A    pymol/ov/src/OVOneToOne.c
1814:info:fetch A    pymol/ov/src/ov_status.h
1815:info:fetch A    pymol/ov/src/ov_port.h
1816:info:fetch A    pymol/PACKAGING
1817:info:fetch A    pymol/AUTHORS
1818:info:fetch A    pymol/create_shadertext.py
1819:info:fetch A    pymol/setup.py
1820:info:fetch A    pymol/scripts
1821:info:fetch A    pymol/scripts/metaphorics
1822:info:fetch A    pymol/scripts/metaphorics/annotate.pml
1823:info:fetch A    pymol/scripts/metaphorics/alignment.pml
1824:info:fetch A    pymol/scripts/metaphorics/fedora.pml
1825:info:fetch A    pymol/ChangeLog
1826:info:fetch A    pymol/.svnignore
1827:info:fetch A    pymol/layer0
1828:info:fetch A    pymol/layer0/Makefile.in
1829:info:fetch A    pymol/layer0/os_types.h
1830:info:fetch A    pymol/layer0/Word.c
1831:info:fetch A    pymol/layer0/Deferred.c
1832:info:fetch A    pymol/layer0/Word.h
1833:info:fetch A    pymol/layer0/Feedback.c
1834:info:fetch A    pymol/layer0/Deferred.h
1835:info:fetch A    pymol/layer0/SphereData.h
1836:info:fetch A    pymol/layer0/Feedback.h
1837:info:fetch A    pymol/layer0/Raw.c
1838:info:fetch A    pymol/layer0/Block.c
1839:info:fetch A    pymol/layer0/Version.h
1840:info:fetch A    pymol/layer0/MemoryCache.c
1841:info:fetch A    pymol/layer0/Makefile.delsci
1842:info:fetch A    pymol/layer0/Raw.h
1843:info:fetch A    pymol/layer0/Block.h
1844:info:fetch A    pymol/layer0/Texture.c
1845:info:fetch A    pymol/layer0/os_std.h
1846:info:fetch A    pymol/layer0/MemoryCache.h
1847:info:fetch A    pymol/layer0/os_gl.c
1848:info:fetch A    pymol/layer0/Triangle.c
1849:info:fetch A    pymol/layer0/Texture.h
1850:info:fetch A    pymol/layer0/os_gl.h
1851:info:fetch A    pymol/layer0/PyMOLGlobals.h
1852:info:fetch A    pymol/layer0/Triangle.h
1853:info:fetch A    pymol/layer0/os_predef.h
1854:info:fetch A    pymol/layer0/ShaderMgr.c
1855:info:fetch A    pymol/layer0/os_gl_pre.h
1856:info:fetch A    pymol/layer0/ShaderMgr.h
1857:info:fetch A    pymol/layer0/PyMOLOptions.h
1858:info:fetch A    pymol/layer0/os_proprietary.h
1859:info:fetch A    pymol/layer0/os_python.h
1860:info:fetch A    pymol/layer0/Err.c
1861:info:fetch A    pymol/layer0/os_unix.h
1862:info:fetch A    pymol/layer0/Isosurf.c
1863:info:fetch A    pymol/layer0/Match.c
1864:info:fetch A    pymol/layer0/Tetsurf.c
1865:info:fetch A    pymol/layer0/Err.h
1866:info:fetch A    pymol/layer0/Isosurf.h
1867:info:fetch A    pymol/layer0/Match.h
1868:info:fetch A    pymol/layer0/Tetsurf.h
1869:info:fetch A    pymol/layer0/Vector.c
1870:info:fetch A    pymol/layer0/OOMac.h
1871:info:fetch A    pymol/layer0/os_time.h
1872:info:fetch A    pymol/layer0/Matrix.c
1873:info:fetch A    pymol/layer0/Vector.h
1874:info:fetch A    pymol/layer0/Matrix.h
1875:info:fetch A    pymol/layer0/Parse.c
1876:info:fetch A    pymol/layer0/Map.c
1877:info:fetch A    pymol/layer0/MemoryDebug.c
1878:info:fetch A    pymol/layer0/Parse.h
1879:info:fetch A    pymol/layer0/Map.h
1880:info:fetch A    pymol/layer0/Field.c
1881:info:fetch A    pymol/layer0/MemoryDebug.h
1882:info:fetch A    pymol/layer0/Queue.c
1883:info:fetch A    pymol/layer0/ListMacros.h
1884:info:fetch A    pymol/layer0/Sphere.c
1885:info:fetch A    pymol/layer0/Field.h
1886:info:fetch A    pymol/layer0/Queue.h
1887:info:fetch A    pymol/layer0/MyPNG.c
1888:info:fetch A    pymol/layer0/Sphere.h
1889:info:fetch A    pymol/layer0/Tracker.c
1890:info:fetch A    pymol/layer0/Pixmap.c
1891:info:fetch A    pymol/layer0/MyPNG.h
1892:info:fetch A    pymol/layer0/Tracker.h
1893:info:fetch A    pymol/layer0/Pixmap.h
1894:info:fetch A    pymol/layer0/os_limits.h
1895:info:fetch A    pymol/layer0/Util.c
1896:info:fetch A    pymol/layer0/Base.h
1897:info:fetch A    pymol/layer0/Crystal.c
1898:info:fetch A    pymol/layer0/Util.h
1899:info:fetch A    pymol/layer0/Debug.c
1900:info:fetch A    pymol/layer0/Crystal.h
1901:info:fetch A    pymol/layer0/Makefile.am
1902:info:fetch A    pymol/layer0/Debug.h
1903:info:fetch A    pymol/README
1904:info:fetch A    pymol/layer1
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1906:info:fetch A    pymol/layer1/Basis.c
1907:info:fetch A    pymol/layer1/Basis.h
1908:info:fetch A    pymol/layer1/CGO.c
1909:info:fetch A    pymol/layer1/CGO.h
1910:info:fetch A    pymol/layer1/Setting.c
1911:info:fetch A    pymol/layer1/Color.c
1912:info:fetch A    pymol/layer1/Movie.c
1913:info:fetch A    pymol/layer1/Setting.h
1914:info:fetch A    pymol/layer1/Color.h
1915:info:fetch A    pymol/layer1/Movie.h
1916:info:fetch A    pymol/layer1/FontGLUT8x13.c
1917:info:fetch A    pymol/layer1/Seq.c
1918:info:fetch A    pymol/layer1/Ortho.c
1919:info:fetch A    pymol/layer1/Ray.c
1920:info:fetch A    pymol/layer1/Seq.h
1921:info:fetch A    pymol/layer1/Pop.c
1922:info:fetch A    pymol/layer1/Makefile.delsci
1923:info:fetch A    pymol/layer1/P.c
1924:info:fetch A    pymol/layer1/Ray.h
1925:info:fetch A    pymol/layer1/Ortho.h
1926:info:fetch A    pymol/layer1/Wizard.c
1927:info:fetch A    pymol/layer1/Pop.h
1928:info:fetch A    pymol/layer1/P.h
1929:info:fetch A    pymol/layer1/Wizard.h
1930:info:fetch A    pymol/layer1/Extrude.c
1931:info:fetch A    pymol/layer1/Extrude.h
1932:info:fetch A    pymol/layer1/FontGLUT9x15.c
1933:info:fetch A    pymol/layer1/FontGLUTHel10.c
1934:info:fetch A    pymol/layer1/FontGLUTHel12.c
1935:info:fetch A    pymol/layer1/ButMode.c
1936:info:fetch A    pymol/layer1/TypeFace.c
1937:info:fetch A    pymol/layer1/FontGLUTHel18.c
1938:info:fetch A    pymol/layer1/ButMode.h
1939:info:fetch A    pymol/layer1/TypeFace.h
1940:info:fetch A    pymol/layer1/FontType.c
1941:info:fetch A    pymol/layer1/View.c
1942:info:fetch A    pymol/layer1/FontTTF2.h
1943:info:fetch A    pymol/layer1/FontType.h
1944:info:fetch A    pymol/layer1/Shaker.c
1945:info:fetch A    pymol/layer1/View.h
1946:info:fetch A    pymol/layer1/Shaker.h
1947:info:fetch A    pymol/layer1/PConv.c
1948:info:fetch A    pymol/layer1/Rep.c
1949:info:fetch A    pymol/layer1/PyMOLObject.c
1950:info:fetch A    pymol/layer1/Symmetry.c
1951:info:fetch A    pymol/layer1/PConv.h
1952:info:fetch A    pymol/layer1/Rep.h
1953:info:fetch A    pymol/layer1/Character.c
1954:info:fetch A    pymol/layer1/PyMOLObject.h
1955:info:fetch A    pymol/layer1/Scene.c
1956:info:fetch A    pymol/layer1/Symmetry.h
1957:info:fetch A    pymol/layer1/Character.h
1958:info:fetch A    pymol/layer1/FontGLUT.c
1959:info:fetch A    pymol/layer1/Scene.h
1960:info:fetch A    pymol/layer1/Font.c
1961:info:fetch A    pymol/layer1/FontGLUT.h
1962:info:fetch A    pymol/layer1/Font.h
1963:info:fetch A    pymol/layer1/Control.c
1964:info:fetch A    pymol/layer1/ScrollBar.c
1965:info:fetch A    pymol/layer1/Text.c
1966:info:fetch A    pymol/layer1/Control.h
1967:info:fetch A    pymol/layer1/Makefile.am
1968:info:fetch A    pymol/layer1/ScrollBar.h
1969:info:fetch A    pymol/layer1/Text.h
1970:info:fetch A    pymol/layer1/FontTTF.h
1971:info:fetch A    pymol/layer2
1972:info:fetch A    pymol/layer2/ObjectVolume.c
1973:info:fetch A    pymol/layer2/ObjectCGO.c
1974:info:fetch A    pymol/layer2/Makefile.in
1975:info:fetch A    pymol/layer2/RepCylBond.c
1976:info:fetch A    pymol/layer2/ObjectVolume.h
1977:info:fetch A    pymol/layer2/ObjectCGO.h
1978:info:fetch A    pymol/layer2/RepCylBond.h
1979:info:fetch A    pymol/layer2/AtomInfo.c
1980:info:fetch A    pymol/layer2/DistSet.c
1981:info:fetch A    pymol/layer2/ObjectSurface.c
1982:info:fetch A    pymol/layer2/AtomInfo.h
1983:info:fetch A    pymol/layer2/RepDihedral.c
1984:info:fetch A    pymol/layer2/DistSet.h
1985:info:fetch A    pymol/layer2/ObjectSurface.h
1986:info:fetch A    pymol/layer2/ObjectSlice.c
1987:info:fetch A    pymol/layer2/RepLabel.c
1988:info:fetch A    pymol/layer2/RepDihedral.h
1989:info:fetch A    pymol/layer2/RepLabel.h
1990:info:fetch A    pymol/layer2/ObjectSlice.h
1991:info:fetch A    pymol/layer2/RepSphere.c
1992:info:fetch A    pymol/layer2/Makefile.delsci
1993:info:fetch A    pymol/layer2/SculptCache.c
1994:info:fetch A    pymol/layer2/ObjectGadgetRamp.c
1995:info:fetch A    pymol/layer2/RepSphere.h
1996:info:fetch A    pymol/layer2/RepMesh.c
1997:info:fetch A    pymol/layer2/SculptCache.h
1998:info:fetch A    pymol/layer2/ObjectGadgetRamp.h
1999:info:fetch A    pymol/layer2/RepMesh.h
2000:info:fetch A    pymol/layer2/RepDistDash.c
2001:info:fetch A    pymol/layer2/ObjectMolecule2.c
2002:info:fetch A    pymol/layer2/RepDistDash.h
2003:info:fetch A    pymol/layer2/ObjectCallback.c
2004:info:fetch A    pymol/layer2/ObjectCallback.h
2005:info:fetch A    pymol/layer2/RepEllipsoid.c
2006:info:fetch A    pymol/layer2/VFont.c
2007:info:fetch A    pymol/layer2/RepDot.c
2008:info:fetch A    pymol/layer2/RepSurface.c
2009:info:fetch A    pymol/layer2/RepEllipsoid.h
2010:info:fetch A    pymol/layer2/VFont.h
2011:info:fetch A    pymol/layer2/RepDot.h
2012:info:fetch A    pymol/layer2/RepSurface.h
2013:info:fetch A    pymol/layer2/ObjectMap.c
2014:info:fetch A    pymol/layer2/ObjectMap.h
2015:info:fetch A    pymol/layer2/Sculpt.c
2016:info:fetch A    pymol/layer2/RepDistLabel.c
2017:info:fetch A    pymol/layer2/RepCartoon.c
2018:info:fetch A    pymol/layer2/RepNonbonded.c
2019:info:fetch A    pymol/layer2/Sculpt.h
2020:info:fetch A    pymol/layer2/RepDistLabel.h
2021:info:fetch A    pymol/layer2/RepWireBond.c
2022:info:fetch A    pymol/layer2/RepCartoon.h
2023:info:fetch A    pymol/layer2/CoordSet.c
2024:info:fetch A    pymol/layer2/RepNonbonded.h
2025:info:fetch A    pymol/layer2/RepRibbon.c
2026:info:fetch A    pymol/layer2/RepNonbondedSphere.c
2027:info:fetch A    pymol/layer2/RepWireBond.h
2028:info:fetch A    pymol/layer2/CoordSet.h
2029:info:fetch A    pymol/layer2/RepRibbon.h
2030:info:fetch A    pymol/layer2/RepNonbondedSphere.h
2031:info:fetch A    pymol/layer2/ObjectDist.c
2032:info:fetch A    pymol/layer2/ObjectMolecule.c
2033:info:fetch A    pymol/layer2/RepAngle.c
2034:info:fetch A    pymol/layer2/ObjectDist.h
2035:info:fetch A    pymol/layer2/ObjectMolecule.h
2036:info:fetch A    pymol/layer2/RepAngle.h
2037:info:fetch A    pymol/layer2/ObjectAlignment.c
2038:info:fetch A    pymol/layer2/GadgetSet.c
2039:info:fetch A    pymol/layer2/ObjectAlignment.h
2040:info:fetch A    pymol/layer2/GadgetSet.h
2041:info:fetch A    pymol/layer2/ObjectGadget.c
2042:info:fetch A    pymol/layer2/ObjectGroup.c
2043:info:fetch A    pymol/layer2/ObjectMesh.c
2044:info:fetch A    pymol/layer2/ObjectGadget.h
2045:info:fetch A    pymol/layer2/Makefile.am
2046:info:fetch A    pymol/layer2/ObjectGroup.h
2047:info:fetch A    pymol/layer2/ObjectMesh.h
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2050:info:fetch A    pymol/layer3/Seeker.c
2051:info:fetch A    pymol/layer3/PlugIOManager.h
2052:info:fetch A    pymol/layer3/Selector.c
2053:info:fetch A    pymol/layer3/Executive.c
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2055:info:fetch A    pymol/layer3/Seeker.h
2056:info:fetch A    pymol/layer3/Selector.h
2057:info:fetch A    pymol/layer3/Editor.c
2058:info:fetch A    pymol/layer3/Executive.h
2059:info:fetch A    pymol/layer3/Makefile.am
2060:info:fetch A    pymol/layer3/PlugIOManager.c
2061:info:fetch A    pymol/layer3/Editor.h
2062:info:fetch A    pymol/layer3/Executive_pre.h
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2070:info:fetch A    pymol/contrib/uiuc/plugins/include/molfile_plugin.h
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2072:info:fetch A    pymol/contrib/uiuc/plugins/include/import_graphics_plugin.h
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2080:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
2081:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp
2082:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c
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2084:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp
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2086:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c
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2088:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp
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2093:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c
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2095:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c
2096:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM7.h
2097:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/hash.h
2098:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp
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2100:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
2101:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/ReadPARM.h
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2116:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/gaussianplugin.h
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2123:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c
2124:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/readpdb.h
2125:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c
2126:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h
2127:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/fortread.h
2128:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c
2129:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp
2130:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/fastio.h
2131:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp
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2143:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp
2144:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c
2145:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/carplugin.c
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2150:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c
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2152:info:fetch A    pymol/contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h
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2180:info:fetch A    pymol/contrib/sglite/sgglobal.c
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2182:info:fetch A    pymol/contrib/sglite/sglite.h
2183:info:fetch A    pymol/contrib/sglite/sglitemodule.c
2184:info:fetch A    pymol/contrib/champ
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2850:info:fetch A    pymol/examples/devel/cgo03.py
2851:info:fetch A    pymol/examples/devel/cgo05.py
2852:info:fetch A    pymol/examples/devel/pick_wiz.py
2853:info:fetch A    pymol/examples/devel/cgo07.py
2854:info:fetch A    pymol/examples/devel/sele_wiz.py
2855:info:fetch A    pymol/examples/devel/scenes_to_movie01.pml
2856:info:fetch A    pymol/examples/devel/webgui02.py
2857:info:fetch A    pymol/examples/devel/syncmol.py
2858:info:fetch A    pymol/examples/devel/cam2crd.pym
2859:info:fetch A    pymol/examples/devel/brick01.py
2860:info:fetch A    pymol/examples/devel/extend_demo01.py
2861:info:fetch A    pymol/examples/devel/mutate01.pml
2862:info:fetch A    pymol/examples/devel/link_demo.py
2863:info:fetch A    pymol/examples/devel/mutate02.py
2864:info:fetch A    pymol/examples/devel/gl01.py
2865:info:fetch A    pymol/examples/devel/particle02.py
2866:info:fetch A    pymol/examples/devel/gl03.py
2867:info:fetch A    pymol/examples/devel/tkwindow.py
2868:info:fetch A    pymol/examples/devel/chempy_model01.py
2869:info:fetch A    pymol/examples/devel/xmlrpc01.py
2870:info:fetch A    pymol/examples/devel/demo.sdf
2871:info:fetch A    pymol/examples/devel/chempy_model03.py
2872:info:fetch A    pymol/examples/devel/cgo02.py
2873:info:fetch A    pymol/examples/devel/cgo04.py
2874:info:fetch A    pymol/examples/devel/start_pymol.py
2875:info:fetch A    pymol/examples/devel/cgo06.py
2876:info:fetch A    pymol/examples/devel/cgo08.py
2877:info:fetch A    pymol/examples/devel/povray01.py
2878:info:fetch A    pymol/examples/devel/webgui01.py
2879:info:fetch A    pymol/examples/devel/click_ordered_list.py
2880:info:fetch A    pymol/examples/devel/membrane.py
2881:info:fetch A    pymol/examples/devel/cgo_plane.py
2882:info:fetch A    pymol/examples/chempy
2883:info:fetch A    pymol/examples/chempy/generate_mmff.py
2884:info:fetch A    pymol/examples/chempy/generate_amber.py
2885:info:fetch A    pymol/examples/cookbook
2886:info:fetch A    pymol/examples/cookbook/build_peptide.py
2887:info:fetch A    pymol/examples/cookbook/dali.py
2888:info:fetch A    pymol/examples/cookbook/ss_xfer.pml
2889:info:fetch A    pymol/examples/cookbook/contact.pml
2890:info:fetch A    pymol/examples/cookbook/packing.pml
2891:info:fetch A    pymol/examples/cookbook/seq_match_sele.pml
2892:info:fetch A    pymol/examples/cookbook/multiclip_ray.pml
2893:info:fetch A    pymol/examples/cookbook/packsurf.pml
2894:info:fetch A    pymol/examples/cookbook/density.pml
2895:info:fetch A    pymol/examples/cookbook/groel_es.pml
2896:info:fetch A    pymol/examples/cookbook/ribosome.pml
2897:info:fetch A    pymol/examples/cookbook/area_diff.pml
2898:info:fetch A    pymol/examples/cookbook/scenes2movie.pml
2899:info:fetch A    pymol/examples/cookbook/symsph.py
2900:info:fetch A    pymol/examples/cookbook/ref_frame.pml
2901:info:fetch A    pymol/examples/launching
2902:info:fetch A    pymol/examples/launching/launch.py
2903:info:fetch A    pymol/examples/launching/launch_viewer1.py
2904:info:fetch A    pymol/examples/launching/launch_viewer2.py
2905:info:fetch A    pymol/examples/launching/launch_demo.py
2906:info:fetch A    pymol/examples/launching/launch_no_tk.py
2907:info:fetch A    pymol/examples/launching/README
2908:info:fetch A    pymol/examples/package
2909:info:fetch A    pymol/examples/package/redhat
2910:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh70.py152.spec
2911:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh62.py152.spec
2912:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh72.py21.spec
2913:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh80.py22.spec
2914:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh90.py22.spec
2915:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh73.py22.spec
2916:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh70.py152.spec
2917:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh72.py21.spec
2918:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh80.py22.spec
2919:info:fetch A    pymol/examples/package/redhat/pymol-0.93-1.rh62.py152.spec
2920:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh90.py22.spec
2921:info:fetch A    pymol/examples/package/redhat/pymol-0.96-1.rh73.py22.spec
2922:info:fetch Exported revision 4074.
2923:warn:fetch An activity was attempted outside sandbox: /etc/subversion/config
2924:warn:fetch An activity was attempted outside sandbox: /etc/subversion/servers
2925:debug:fetch Privilege de-escalation not attempted as not running as root.
2926:debug:checksum checksum phase started at Wed Oct 15 13:36:09 MDT 2014
2927:notice:checksum --->  Verifying checksums for pymol
2928:debug:checksum Tracelib Sandbox is:
2929:debug:checksum         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
2930:debug:checksum         /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
2931:debug:checksum         /opt/local/var/macports/distfiles/pymol
2932:debug:checksum         /tmp
2933:debug:checksum         /private/tmp
2934:debug:checksum         /var/tmp
2935:debug:checksum         /private/var/tmp
2936:debug:checksum         /var/folders
2937:debug:checksum         /private/var/folders
2938:debug:checksum         /var/empty
2939:debug:checksum         /private/var/empty
2940:debug:checksum         /var/run
2941:debug:checksum         /private/var/run
2942:debug:checksum         /var/db/xcode_select_link
2943:debug:checksum         /private/var/db/xcode_select_link
2944:debug:checksum         /var/db/mds
2945:debug:checksum         /private/var/db/mds
2946:debug:checksum         /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
2947:debug:checksum         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
2948:debug:checksum         /Library/Caches/com.apple.Xcode
2949:debug:checksum         /dev
2950:debug:checksum         /etc/passwd
2951:debug:checksum         /etc/groups
2952:debug:checksum         /etc/localtime
2953:debug:checksum         /Applications/Xcode.app
2954:debug:checksum         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
2955:debug:checksum         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
2956:debug:checksum         /opt/local/var/macports/build/.ccache
2957:debug:checksum Found Dependency: path: /usr/bin filename: svn regex: ^svn$
2958:debug:checksum Tracemode will respect recursively collected port dependencies:
2959:debug:checksum Executing org.macports.checksum (pymol)
2960:debug:checksum Privilege de-escalation not attempted as not running as root.
2961:debug:extract extract phase started at Wed Oct 15 13:36:09 MDT 2014
2962:notice:extract --->  Extracting pymol
2963:debug:extract Tracelib Sandbox is:
2964:debug:extract  /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
2965:debug:extract  /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
2966:debug:extract  /opt/local/var/macports/distfiles/pymol
2967:debug:extract  /tmp
2968:debug:extract  /private/tmp
2969:debug:extract  /var/tmp
2970:debug:extract  /private/var/tmp
2971:debug:extract  /var/folders
2972:debug:extract  /private/var/folders
2973:debug:extract  /var/empty
2974:debug:extract  /private/var/empty
2975:debug:extract  /var/run
2976:debug:extract  /private/var/run
2977:debug:extract  /var/db/xcode_select_link
2978:debug:extract  /private/var/db/xcode_select_link
2979:debug:extract  /var/db/mds
2980:debug:extract  /private/var/db/mds
2981:debug:extract  /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
2982:debug:extract  /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
2983:debug:extract  /Library/Caches/com.apple.Xcode
2984:debug:extract  /dev
2985:debug:extract  /etc/passwd
2986:debug:extract  /etc/groups
2987:debug:extract  /etc/localtime
2988:debug:extract  /Applications/Xcode.app
2989:debug:extract  /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
2990:debug:extract  /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
2991:debug:extract  /opt/local/var/macports/build/.ccache
2992:debug:extract Found Dependency: path: /usr/bin filename: svn regex: ^svn$
2993:debug:extract Tracemode will respect recursively collected port dependencies:
2994:debug:extract Executing org.macports.extract (pymol)
2995:debug:extract Privilege de-escalation not attempted as not running as root.
2996:debug:patch patch phase started at Wed Oct 15 13:36:09 MDT 2014
2997:debug:patch Tracelib Sandbox is:
2998:debug:patch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
2999:debug:patch    /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
3000:debug:patch    /opt/local/var/macports/distfiles/pymol
3001:debug:patch    /tmp
3002:debug:patch    /private/tmp
3003:debug:patch    /var/tmp
3004:debug:patch    /private/var/tmp
3005:debug:patch    /var/folders
3006:debug:patch    /private/var/folders
3007:debug:patch    /var/empty
3008:debug:patch    /private/var/empty
3009:debug:patch    /var/run
3010:debug:patch    /private/var/run
3011:debug:patch    /var/db/xcode_select_link
3012:debug:patch    /private/var/db/xcode_select_link
3013:debug:patch    /var/db/mds
3014:debug:patch    /private/var/db/mds
3015:debug:patch    /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
3016:debug:patch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
3017:debug:patch    /Library/Caches/com.apple.Xcode
3018:debug:patch    /dev
3019:debug:patch    /etc/passwd
3020:debug:patch    /etc/groups
3021:debug:patch    /etc/localtime
3022:debug:patch    /Applications/Xcode.app
3023:debug:patch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
3024:debug:patch    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
3025:debug:patch    /opt/local/var/macports/build/.ccache
3026:debug:patch Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3027:debug:patch Tracemode will respect recursively collected port dependencies:
3028:debug:patch Executing org.macports.patch (pymol)
3029:notice:patch --->  Applying patches to pymol
3030:info:patch --->  Applying setup_py.diff
3031:debug:patch Environment:
3032CC_PRINT_OPTIONS='YES'
3033CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3034CPATH='/opt/local/include'
3035LIBRARY_PATH='/opt/local/lib'
3036MACOSX_DEPLOYMENT_TARGET='10.9'
3037:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
3038:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/setup_py.diff'
3039:info:patch patching file setup.py
3040:info:patch --->  Applying pymol_shell.diff
3041:debug:patch Environment:
3042CC_PRINT_OPTIONS='YES'
3043CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3044CPATH='/opt/local/include'
3045LIBRARY_PATH='/opt/local/lib'
3046MACOSX_DEPLOYMENT_TARGET='10.9'
3047:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
3048:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pymol_shell.diff'
3049:info:patch patching file setup/pymol_macports
3050:info:patch --->  Applying pmg_tk_platform.patch
3051:debug:patch Environment:
3052CC_PRINT_OPTIONS='YES'
3053CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3054CPATH='/opt/local/include'
3055LIBRARY_PATH='/opt/local/lib'
3056MACOSX_DEPLOYMENT_TARGET='10.9'
3057:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
3058:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pmg_tk_platform.patch'
3059:info:patch patching file modules/pmg_tk/skins/normal/__init__.py
3060:info:patch Hunk #1 succeeded at 259 (offset 23 lines).
3061:info:patch Hunk #2 succeeded at 278 (offset 23 lines).
3062:info:patch Hunk #3 succeeded at 305 (offset 23 lines).
3063:info:patch patching file modules/pmg_tk/PMGApp.py
3064:info:patch Hunk #1 succeeded at 203 (offset 19 lines).
3065:info:patch Hunk #2 succeeded at 221 (offset 19 lines).
3066:info:patch --->  Applying apbs-psize.patch
3067:debug:patch Environment:
3068CC_PRINT_OPTIONS='YES'
3069CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3070CPATH='/opt/local/include'
3071LIBRARY_PATH='/opt/local/lib'
3072MACOSX_DEPLOYMENT_TARGET='10.9'
3073:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
3074:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/apbs-psize.patch'
3075:info:patch patching file modules/pmg_tk/startup/apbs_tools.py
3076:info:patch --->  Applying apbs_tkinter.patch
3077:debug:patch Environment:
3078CC_PRINT_OPTIONS='YES'
3079CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3080CPATH='/opt/local/include'
3081LIBRARY_PATH='/opt/local/lib'
3082MACOSX_DEPLOYMENT_TARGET='10.9'
3083:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
3084:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/apbs_tkinter.patch'
3085:info:patch patching file modules/pmg_tk/startup/apbs_tools.py
3086:info:patch Hunk #12 succeeded at 2284 (offset 4 lines).
3087:info:patch Hunk #13 succeeded at 2335 (offset 4 lines).
3088:info:patch Hunk #14 succeeded at 2352 (offset 4 lines).
3089:info:patch Hunk #15 succeeded at 2372 (offset 4 lines).
3090:info:patch Hunk #16 succeeded at 2394 (offset 4 lines).
3091:info:patch --->  Applying pymol-clang.diff
3092:debug:patch Environment:
3093CC_PRINT_OPTIONS='YES'
3094CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3095CPATH='/opt/local/include'
3096LIBRARY_PATH='/opt/local/lib'
3097MACOSX_DEPLOYMENT_TARGET='10.9'
3098:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0'
3099:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol/files/pymol-clang.diff'
3100:info:patch patching file layer0/ShaderMgr.c
3101:info:patch patching file layer0/Map.c
3102:info:patch patching file layer1/Basis.c
3103:info:patch patching file layer1/CGO.c
3104:info:patch patching file layer1/Ortho.c
3105:info:patch patching file layer1/P.c
3106:info:patch patching file layer1/Extrude.c
3107:info:patch patching file layer1/Scene.c
3108:info:patch patching file layer1/Control.c
3109:info:patch patching file layer2/RepSphere.c
3110:info:patch patching file layer2/ObjectMolecule2.c
3111:info:patch patching file layer2/RepDot.c
3112:info:patch patching file layer2/RepSurface.c
3113:info:patch patching file layer2/RepCartoon.c
3114:info:patch patching file layer2/ObjectMolecule.c
3115:info:patch patching file layer3/Selector.c
3116:info:patch patching file layer3/Executive.c
3117:info:patch patching file layer3/PlugIOManager.c
3118:info:patch patching file layer4/Cmd.c
3119:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp
3120:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp
3121:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c
3122:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c
3123:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c
3124:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp
3125:info:patch patching file contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp
3126:info:patch patching file modules/cealign/src/tnt/tnt_fortran_array1d.h
3127:info:patch patching file modules/cealign/src/tnt/tnt_array1d.h
3128:debug:patch Executing proc-post-org.macports.patch-patch-0
3129:info:patch --->  Patching setup.py: s|@PREFIX@|/opt/local|g
3130:debug:patch Executing reinplace: /usr/bin/sed s|@PREFIX@|/opt/local|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py >@ file16 2>@stderr
3131:debug:patch euid/egid changed to: 0/0
3132:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py to macports
3133:debug:patch euid/egid changed to: 502/501
3134:debug:patch euid/egid changed to: 0/0
3135:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py
3136:debug:patch euid/egid changed to: 502/501
3137:info:patch --->  Patching pymol_macports: s|@@PYTHON_PKGDIR@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages|g
3138:debug:patch Executing reinplace: /usr/bin/sed s|@@PYTHON_PKGDIR@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports >@ file16 2>@stderr
3139:debug:patch euid/egid changed to: 0/0
3140:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports to macports
3141:debug:patch euid/egid changed to: 502/501
3142:debug:patch euid/egid changed to: 0/0
3143:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports
3144:debug:patch euid/egid changed to: 502/501
3145:info:patch --->  Patching pymol_macports: s|@@PYTHON_BINARY@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|g
3146:debug:patch Executing reinplace: /usr/bin/sed s|@@PYTHON_BINARY@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|g < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports >@ file16 2>@stderr
3147:debug:patch euid/egid changed to: 0/0
3148:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports to macports
3149:debug:patch euid/egid changed to: 502/501
3150:debug:patch euid/egid changed to: 0/0
3151:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports
3152:debug:patch euid/egid changed to: 502/501
3153:info:patch --->  Patching setup.py: s|"-O3",|"-O3", "-g",|g
3154:debug:patch Executing reinplace: /usr/bin/sed {s|"-O3",|"-O3", "-g",|g} < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py >@ file16 2>@stderr
3155:debug:patch euid/egid changed to: 0/0
3156:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py to macports
3157:debug:patch euid/egid changed to: 502/501
3158:debug:patch euid/egid changed to: 0/0
3159:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup.py
3160:debug:patch euid/egid changed to: 502/501
3161:debug:patch Privilege de-escalation not attempted as not running as root.
3162:debug:configure configure phase started at Wed Oct 15 13:36:09 MDT 2014
3163:notice:configure --->  Configuring pymol
3164:debug:configure Using compiler 'Xcode Clang'
3165:debug:configure Tracelib Sandbox is:
3166:debug:configure        /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
3167:debug:configure        /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
3168:debug:configure        /opt/local/var/macports/distfiles/pymol
3169:debug:configure        /tmp
3170:debug:configure        /private/tmp
3171:debug:configure        /var/tmp
3172:debug:configure        /private/var/tmp
3173:debug:configure        /var/folders
3174:debug:configure        /private/var/folders
3175:debug:configure        /var/empty
3176:debug:configure        /private/var/empty
3177:debug:configure        /var/run
3178:debug:configure        /private/var/run
3179:debug:configure        /var/db/xcode_select_link
3180:debug:configure        /private/var/db/xcode_select_link
3181:debug:configure        /var/db/mds
3182:debug:configure        /private/var/db/mds
3183:debug:configure        /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
3184:debug:configure        /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
3185:debug:configure        /Library/Caches/com.apple.Xcode
3186:debug:configure        /dev
3187:debug:configure        /etc/passwd
3188:debug:configure        /etc/groups
3189:debug:configure        /etc/localtime
3190:debug:configure        /Applications/Xcode.app
3191:debug:configure        /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
3192:debug:configure        /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
3193:debug:configure        /opt/local/var/macports/build/.ccache
3194:debug:configure Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3195:debug:configure Tracemode will respect recursively collected port dependencies: SuiteSparse Xft2 bzip2 cctools cctools-headers cloog cython_select db48 db_select expat fftw-3 fontconfig freeglut freetype gcc_select gdbm gettext glew gmp isl ld64 libedit libffi libgcc libiconv libmpc libpng libxml2 llvm-3.3 llvm_select mesa mpfr ncurses nosetests_select openssl pcre perl5 perl5.16 py27-cython py27-nose py27-numpy py27-pmw py27-scipy py27-setuptools py27-tkinter python27 python_select sqlite3 swig swig-python tcl tk xorg-dri2proto xorg-fixesproto xorg-glproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXScrnSaver xorg-libXau xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXmu xorg-libXrandr xorg-libXt xorg-libXxf86vm xorg-libice xorg-libpthread-stubs xorg-libsm xorg-libxcb xorg-randrproto xorg-renderproto xorg-scrnsaverproto xorg-xcb-proto xorg-xextproto xorg-xf86vidmodeproto xorg-xproto xrender xz zlib
3196:debug:configure Executing proc-pre-org.macports.configure-configure-0
3197:debug:configure Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3198:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: python27 freeglut freetype glew libpng mesa py27-numpy py27-pmw py27-scipy py27-tkinter xdpyinfo
3199:debug:configure Ignoring active_variants requirement for tcl because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tcl
3200:debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
3201:debug:configure Executing org.macports.configure (pymol)
3202:debug:configure Privilege de-escalation not attempted as not running as root.
3203:debug:build build phase started at Wed Oct 15 13:36:09 MDT 2014
3204:notice:build --->  Building pymol
3205:debug:build Tracelib Sandbox is:
3206:debug:build    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
3207:debug:build    /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
3208:debug:build    /opt/local/var/macports/distfiles/pymol
3209:debug:build    /tmp
3210:debug:build    /private/tmp
3211:debug:build    /var/tmp
3212:debug:build    /private/var/tmp
3213:debug:build    /var/folders
3214:debug:build    /private/var/folders
3215:debug:build    /var/empty
3216:debug:build    /private/var/empty
3217:debug:build    /var/run
3218:debug:build    /private/var/run
3219:debug:build    /var/db/xcode_select_link
3220:debug:build    /private/var/db/xcode_select_link
3221:debug:build    /var/db/mds
3222:debug:build    /private/var/db/mds
3223:debug:build    /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
3224:debug:build    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
3225:debug:build    /Library/Caches/com.apple.Xcode
3226:debug:build    /dev
3227:debug:build    /etc/passwd
3228:debug:build    /etc/groups
3229:debug:build    /etc/localtime
3230:debug:build    /Applications/Xcode.app
3231:debug:build    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
3232:debug:build    /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
3233:debug:build    /opt/local/var/macports/build/.ccache
3234:debug:build Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3235:debug:build Tracemode will respect recursively collected port dependencies: SuiteSparse Xft2 bzip2 cctools cctools-headers cloog cython_select db48 db_select expat fftw-3 fontconfig freeglut freetype gcc_select gdbm gettext glew gmp isl ld64 libedit libffi libgcc libiconv libmpc libpng libxml2 llvm-3.3 llvm_select mesa mpfr ncurses nosetests_select openssl pcre perl5 perl5.16 py27-cython py27-nose py27-numpy py27-pmw py27-scipy py27-setuptools py27-tkinter python27 python_select sqlite3 swig swig-python tcl tk xorg-dri2proto xorg-fixesproto xorg-glproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXScrnSaver xorg-libXau xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXmu xorg-libXrandr xorg-libXt xorg-libXxf86vm xorg-libice xorg-libpthread-stubs xorg-libsm xorg-libxcb xorg-randrproto xorg-renderproto xorg-scrnsaverproto xorg-xcb-proto xorg-xextproto xorg-xf86vidmodeproto xorg-xproto xrender xz zlib
3236:debug:build Executing proc-pre-org.macports.build-build-0
3237:debug:build Executing org.macports.build (pymol)
3238:debug:build Privilege de-escalation not attempted as not running as root.
3239:debug:destroot destroot phase started at Wed Oct 15 13:36:10 MDT 2014
3240:notice:destroot --->  Staging pymol into destroot
3241:debug:destroot Can't run destroot under sudo without elevated privileges (due to mtree).
3242:debug:destroot Run destroot without sudo to avoid root privileges.
3243:debug:destroot Going to escalate privileges back to root.
3244:debug:destroot euid changed to: 0. egid changed to: 0.
3245:info:destroot . changed
3246:info:destroot  gid expected 0 found 80 modified
3247:info:destroot ./usr missing (created)
3248:info:destroot . missing (directory not created: File exists)
3249:info:destroot ./Applications missing (created)
3250:info:destroot ./Developer missing (created)
3251:info:destroot ./Library missing (created)
3252:info:destroot . changed
3253:info:destroot  gid expected 80 found 0 modified
3254:info:destroot ./bin missing (created)
3255:info:destroot ./etc missing (created)
3256:info:destroot ./include missing (created)
3257:info:destroot ./lib missing (created)
3258:info:destroot ./lib/pkgconfig missing (created)
3259:info:destroot ./libexec missing (created)
3260:info:destroot ./sbin missing (created)
3261:info:destroot ./share missing (created)
3262:info:destroot ./share/info missing (created)
3263:info:destroot ./share/man missing (created)
3264:info:destroot ./share/man/cat1 missing (created)
3265:info:destroot ./share/man/cat2 missing (created)
3266:info:destroot ./share/man/cat3 missing (created)
3267:info:destroot ./share/man/cat4 missing (created)
3268:info:destroot ./share/man/cat5 missing (created)
3269:info:destroot ./share/man/cat6 missing (created)
3270:info:destroot ./share/man/cat7 missing (created)
3271:info:destroot ./share/man/cat8 missing (created)
3272:info:destroot ./share/man/cat9 missing (created)
3273:info:destroot ./share/man/catl missing (created)
3274:info:destroot ./share/man/catn missing (created)
3275:info:destroot ./share/man/man1 missing (created)
3276:info:destroot ./share/man/man2 missing (created)
3277:info:destroot ./share/man/man3 missing (created)
3278:info:destroot ./share/man/man4 missing (created)
3279:info:destroot ./share/man/man5 missing (created)
3280:info:destroot ./share/man/man6 missing (created)
3281:info:destroot ./share/man/man7 missing (created)
3282:info:destroot ./share/man/man8 missing (created)
3283:info:destroot ./share/man/man9 missing (created)
3284:info:destroot ./share/man/manl missing (created)
3285:info:destroot ./share/man/mann missing (created)
3286:info:destroot ./share/nls missing (created)
3287:info:destroot ./share/nls/C missing (created)
3288:info:destroot ./share/nls/af_ZA.ISO8859-1 missing (created)
3289:info:destroot ./share/nls/af_ZA.ISO8859-15 missing (created)
3290:info:destroot ./share/nls/bg_BG.CP1251 missing (created)
3291:info:destroot ./share/nls/cs_CZ.ISO8859-2 missing (created)
3292:info:destroot ./share/nls/da_DK.ISO8859-1 missing (created)
3293:info:destroot ./share/nls/da_DK.ISO8859-15 missing (created)
3294:info:destroot ./share/nls/de_AT.ISO8859-1 missing (created)
3295:info:destroot ./share/nls/de_AT.ISO8859-15 missing (created)
3296:info:destroot ./share/nls/de_CH.ISO8859-1 missing (created)
3297:info:destroot ./share/nls/de_CH.ISO8859-15 missing (created)
3298:info:destroot ./share/nls/de_DE.ISO8859-1 missing (created)
3299:info:destroot ./share/nls/de_DE.ISO8859-15 missing (created)
3300:info:destroot ./share/nls/el_GR.ISO8859-7 missing (created)
3301:info:destroot ./share/nls/en_AU.ISO8859-1 missing (created)
3302:info:destroot ./share/nls/en_AU.ISO8859-15 missing (created)
3303:info:destroot ./share/nls/en_AU.US-ASCII missing (created)
3304:info:destroot ./share/nls/en_CA.ISO8859-1 missing (created)
3305:info:destroot ./share/nls/en_CA.ISO8859-15 missing (created)
3306:info:destroot ./share/nls/en_CA.US-ASCII missing (created)
3307:info:destroot ./share/nls/en_GB.ISO8859-1 missing (created)
3308:info:destroot ./share/nls/en_GB.ISO8859-15 missing (created)
3309:info:destroot ./share/nls/en_GB.US-ASCII missing (created)
3310:info:destroot ./share/nls/en_NZ.ISO8859-1 missing (created)
3311:info:destroot ./share/nls/en_NZ.ISO8859-15 missing (created)
3312:info:destroot ./share/nls/en_NZ.US-ASCII missing (created)
3313:info:destroot ./share/nls/en_US.ISO8859-1 missing (created)
3314:info:destroot ./share/nls/en_US.ISO8859-15 missing (created)
3315:info:destroot ./share/nls/es_ES.ISO8859-1 missing (created)
3316:info:destroot ./share/nls/es_ES.ISO8859-15 missing (created)
3317:info:destroot ./share/nls/et_EE.ISO8859-15 missing (created)
3318:info:destroot ./share/nls/fi_FI.ISO8859-1 missing (created)
3319:info:destroot ./share/nls/fi_FI.ISO8859-15 missing (created)
3320:info:destroot ./share/nls/fr_BE.ISO8859-1 missing (created)
3321:info:destroot ./share/nls/fr_BE.ISO8859-15 missing (created)
3322:info:destroot ./share/nls/fr_CA.ISO8859-1 missing (created)
3323:info:destroot ./share/nls/fr_CA.ISO8859-15 missing (created)
3324:info:destroot ./share/nls/fr_CH.ISO8859-1 missing (created)
3325:info:destroot ./share/nls/fr_CH.ISO8859-15 missing (created)
3326:info:destroot ./share/nls/fr_FR.ISO8859-1 missing (created)
3327:info:destroot ./share/nls/fr_FR.ISO8859-15 missing (created)
3328:info:destroot ./share/nls/hi_IN.ISCII-DEV missing (created)
3329:info:destroot ./share/nls/hr_HR.ISO8859-2 missing (created)
3330:info:destroot ./share/nls/hu_HU.ISO8859-2 missing (created)
3331:info:destroot ./share/nls/is_IS.ISO8859-1 missing (created)
3332:info:destroot ./share/nls/is_IS.ISO8859-15 missing (created)
3333:info:destroot ./share/nls/it_CH.ISO8859-1 missing (created)
3334:info:destroot ./share/nls/it_CH.ISO8859-15 missing (created)
3335:info:destroot ./share/nls/it_IT.ISO8859-1 missing (created)
3336:info:destroot ./share/nls/it_IT.ISO8859-15 missing (created)
3337:info:destroot ./share/nls/ja_JP.SJIS missing (created)
3338:info:destroot ./share/nls/ja_JP.eucJP missing (created)
3339:info:destroot ./share/nls/ko_KR.eucKR missing (created)
3340:info:destroot ./share/nls/la_LN.ISO8859-1 missing (created)
3341:info:destroot ./share/nls/la_LN.ISO8859-15 missing (created)
3342:info:destroot ./share/nls/la_LN.ISO8859-2 missing (created)
3343:info:destroot ./share/nls/la_LN.ISO8859-4 missing (created)
3344:info:destroot ./share/nls/la_LN.US-ASCII missing (created)
3345:info:destroot ./share/nls/lt_LT.ISO8859-4 missing (created)
3346:info:destroot ./share/nls/nl_BE.ISO8859-1 missing (created)
3347:info:destroot ./share/nls/nl_BE.ISO8859-15 missing (created)
3348:info:destroot ./share/nls/nl_NL.ISO8859-1 missing (created)
3349:info:destroot ./share/nls/nl_NL.ISO8859-15 missing (created)
3350:info:destroot ./share/nls/no_NO.ISO8859-1 missing (created)
3351:info:destroot ./share/nls/no_NO.ISO8859-15 missing (created)
3352:info:destroot ./share/nls/pl_PL.ISO8859-2 missing (created)
3353:info:destroot ./share/nls/pt_BR.ISO8859-1 missing (created)
3354:info:destroot ./share/nls/pt_PT.ISO8859-1 missing (created)
3355:info:destroot ./share/nls/pt_PT.ISO8859-15 missing (created)
3356:info:destroot ./share/nls/ro_RO.ISO8859-2 missing (created)
3357:info:destroot ./share/nls/ru_RU.CP866 missing (created)
3358:info:destroot ./share/nls/ru_RU.ISO8859-5 missing (created)
3359:info:destroot ./share/nls/ru_RU.KOI8-R missing (created)
3360:info:destroot ./share/nls/sk_SK.ISO8859-2 missing (created)
3361:info:destroot ./share/nls/sl_SI.ISO8859-2 missing (created)
3362:info:destroot ./share/nls/sv_SE.ISO8859-1 missing (created)
3363:info:destroot ./share/nls/sv_SE.ISO8859-15 missing (created)
3364:info:destroot ./share/nls/tr_TR.ISO8859-9 missing (created)
3365:info:destroot ./share/nls/uk_UA.ISO8859-5 missing (created)
3366:info:destroot ./share/nls/uk_UA.KOI8-U missing (created)
3367:info:destroot ./share/nls/zh_CN.eucCN missing (created)
3368:info:destroot ./share/nls/zh_TW.Big5 missing (created)
3369:info:destroot ./share/skel missing (created)
3370:info:destroot ./src missing (created)
3371:info:destroot ./var missing (created)
3372:info:destroot ./www missing (created)
3373:debug:destroot Tracelib Sandbox is:
3374:debug:destroot         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work
3375:debug:destroot         /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/pymol
3376:debug:destroot         /opt/local/var/macports/distfiles/pymol
3377:debug:destroot         /tmp
3378:debug:destroot         /private/tmp
3379:debug:destroot         /var/tmp
3380:debug:destroot         /private/var/tmp
3381:debug:destroot         /var/folders
3382:debug:destroot         /private/var/folders
3383:debug:destroot         /var/empty
3384:debug:destroot         /private/var/empty
3385:debug:destroot         /var/run
3386:debug:destroot         /private/var/run
3387:debug:destroot         /var/db/xcode_select_link
3388:debug:destroot         /private/var/db/xcode_select_link
3389:debug:destroot         /var/db/mds
3390:debug:destroot         /private/var/db/mds
3391:debug:destroot         /opt/local/var/macports/home/Library/Preferences/com.apple.dt.Xcode.plist
3392:debug:destroot         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/Library/Preferences/com.apple.dt.Xcode.plist
3393:debug:destroot         /Library/Caches/com.apple.Xcode
3394:debug:destroot         /dev
3395:debug:destroot         /etc/passwd
3396:debug:destroot         /etc/groups
3397:debug:destroot         /etc/localtime
3398:debug:destroot         /Applications/Xcode.app
3399:debug:destroot         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.home/.ccache
3400:debug:destroot         /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.tmp
3401:debug:destroot         /opt/local/var/macports/build/.ccache
3402:debug:destroot Found Dependency: path: /usr/bin filename: svn regex: ^svn$
3403:debug:destroot Tracemode will respect recursively collected port dependencies: SuiteSparse Xft2 bzip2 cctools cctools-headers cloog cython_select db48 db_select expat fftw-3 fontconfig freeglut freetype gcc_select gdbm gettext glew gmp isl ld64 libedit libffi libgcc libiconv libmpc libpng libxml2 llvm-3.3 llvm_select mesa mpfr ncurses nosetests_select openssl pcre perl5 perl5.16 py27-cython py27-nose py27-numpy py27-pmw py27-scipy py27-setuptools py27-tkinter python27 python_select sqlite3 swig swig-python tcl tk xdpyinfo xorg-dmxproto xorg-dri2proto xorg-fixesproto xorg-glproto xorg-inputproto xorg-kbproto xorg-libX11 xorg-libXScrnSaver xorg-libXau xorg-libXdmcp xorg-libXext xorg-libXfixes xorg-libXi xorg-libXinerama xorg-libXmu xorg-libXrandr xorg-libXt xorg-libXtst xorg-libXxf86vm xorg-libdmx xorg-libice xorg-libpthread-stubs xorg-libsm xorg-libxcb xorg-randrproto xorg-recordproto xorg-renderproto xorg-scrnsaverproto xorg-xcb-proto xorg-xextproto xorg-xf86vidmodeproto xorg-xineramaproto xorg-xproto xrender xz zlib
3404:debug:destroot Executing proc-pre-org.macports.destroot-destroot-0
3405:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc
3406:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc/pymol
3407:info:destroot xinstall: mkdir /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/share/doc/pymol/examples
3408:debug:destroot Executing proc-pre-org.macports.destroot-destroot-1
3409:debug:destroot Executing org.macports.destroot (pymol)
3410:debug:destroot Environment:
3411CC='/usr/bin/clang'
3412CC_PRINT_OPTIONS='YES'
3413CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/.CC_PRINT_OPTIONS'
3414CPATH='/opt/local/include'
3415CXX='/usr/bin/clang++'
3416LIBRARY_PATH='/opt/local/lib'
3417MACOSX_DEPLOYMENT_TARGET='10.9'
3418:debug:destroot Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot'
3419:debug:destroot Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg install --prefix=/opt/local/Library/Frameworks/Python.framework/Versions/2.7 --root=/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot
3420:info:destroot fatal: Not a git repository (or any of the parent directories): .git
3421:info:destroot svn: E155007: '/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol' is not a working copy
3422:info:destroot running install
3423:info:destroot running build
3424:info:destroot running build_py
3425:info:destroot creating build/lib.macosx-10.9-x86_64-2.7
3426:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol
3427:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed
3428:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol
3429:info:destroot copying modules/pymol/embed/epymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol
3430:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy
3431:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
3432:info:destroot copying modules/chempy/tinker/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
3433:info:destroot copying modules/chempy/tinker/amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
3434:info:destroot copying modules/chempy/tinker/keyword.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
3435:info:destroot copying modules/chempy/tinker/realtime.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
3436:info:destroot copying modules/chempy/tinker/state.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/tinker
3437:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3438:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins
3439:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo
3440:info:destroot copying modules/pmg_tk/skins/demo/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo
3441:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
3442:info:destroot copying modules/pmg_tk/startup/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
3443:info:destroot copying modules/pmg_tk/startup/apbs_tools.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
3444:info:destroot copying modules/pmg_tk/startup/remote_pdb_load.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup
3445:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl
3446:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu
3447:info:destroot copying modules/pymol/opengl/glu/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu
3448:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_wx
3449:info:destroot copying modules/pmg_wx/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_wx
3450:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/fast
3451:info:destroot copying modules/chempy/fast/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/fast
3452:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/fragments
3453:info:destroot copying modules/chempy/fragments/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/fragments
3454:info:destroot copying modules/pmg_tk/skins/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins
3455:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/web
3456:info:destroot copying modules/web/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/web
3457:info:destroot copying modules/web/pymolhttpd.py -> build/lib.macosx-10.9-x86_64-2.7/web
3458:info:destroot copying modules/pymol/embed/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed
3459:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/contrib
3460:info:destroot copying modules/pymol/contrib/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/contrib
3461:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut
3462:info:destroot copying modules/pymol/opengl/glut/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut
3463:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol2
3464:info:destroot copying modules/pymol2/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2
3465:info:destroot copying modules/pymol2/cmd2.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2
3466:info:destroot copying modules/pymol2/make_cmd2.py -> build/lib.macosx-10.9-x86_64-2.7/pymol2
3467:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/web/examples
3468:info:destroot copying modules/web/examples/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/web/examples
3469:info:destroot copying modules/web/examples/justhttpd.py -> build/lib.macosx-10.9-x86_64-2.7/web/examples
3470:info:destroot copying modules/pmg_tk/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3471:info:destroot copying modules/pmg_tk/ColorEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3472:info:destroot copying modules/pmg_tk/Demo.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3473:info:destroot copying modules/pmg_tk/PMGApp.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3474:info:destroot copying modules/pmg_tk/PyMOLMapLoad.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3475:info:destroot copying modules/pmg_tk/SetEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3476:info:destroot copying modules/pmg_tk/Setting.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3477:info:destroot copying modules/pmg_tk/TextEditor.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3478:info:destroot copying modules/pmg_tk/volume.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk
3479:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
3480:info:destroot copying modules/pmg_tk/skins/normal/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
3481:info:destroot copying modules/pmg_tk/skins/normal/builder.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
3482:info:destroot copying modules/pmg_tk/skins/normal/ModalWindow.py -> build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal
3483:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/champ
3484:info:destroot copying modules/chempy/champ/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
3485:info:destroot copying modules/chempy/champ/amber99.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
3486:info:destroot copying modules/chempy/champ/assign.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
3487:info:destroot copying modules/chempy/champ/formal_charges.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/champ
3488:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol
3489:info:destroot copying modules/pymol/embed/wxpymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol
3490:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3491:info:destroot copying modules/pymol/wizard/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3492:info:destroot copying modules/pymol/wizard/annotation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3493:info:destroot copying modules/pymol/wizard/appearance.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3494:info:destroot copying modules/pymol/wizard/benchmark.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3495:info:destroot copying modules/pymol/wizard/box.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3496:info:destroot copying modules/pymol/wizard/charge.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3497:info:destroot copying modules/pymol/wizard/cleanup.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3498:info:destroot copying modules/pymol/wizard/demo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3499:info:destroot copying modules/pymol/wizard/density.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3500:info:destroot copying modules/pymol/wizard/distance.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3501:info:destroot copying modules/pymol/wizard/dragging.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3502:info:destroot copying modules/pymol/wizard/fedora.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3503:info:destroot copying modules/pymol/wizard/filter.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3504:info:destroot copying modules/pymol/wizard/label.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3505:info:destroot copying modules/pymol/wizard/measurement.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3506:info:destroot copying modules/pymol/wizard/message.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3507:info:destroot copying modules/pymol/wizard/mutagenesis.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3508:info:destroot copying modules/pymol/wizard/pair_fit.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3509:info:destroot copying modules/pymol/wizard/pseudoatom.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3510:info:destroot copying modules/pymol/wizard/renaming.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3511:info:destroot copying modules/pymol/wizard/sculpting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3512:info:destroot copying modules/pymol/wizard/security.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3513:info:destroot copying modules/pymol/wizard/stereodemo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3514:info:destroot copying modules/pymol/wizard/toggle.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/wizard
3515:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl
3516:info:destroot copying modules/pymol/opengl/gl/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl
3517:info:destroot copying modules/pymol/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3518:info:destroot copying modules/pymol/api.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3519:info:destroot copying modules/pymol/callback.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3520:info:destroot copying modules/pymol/cgo.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3521:info:destroot copying modules/pymol/checking.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3522:info:destroot copying modules/pymol/cmd.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3523:info:destroot copying modules/pymol/colorramping.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3524:info:destroot copying modules/pymol/commanding.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3525:info:destroot copying modules/pymol/completing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3526:info:destroot copying modules/pymol/computing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3527:info:destroot copying modules/pymol/constants.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3528:info:destroot copying modules/pymol/constants_palette.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3529:info:destroot copying modules/pymol/controlling.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3530:info:destroot copying modules/pymol/creating.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3531:info:destroot copying modules/pymol/editing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3532:info:destroot copying modules/pymol/editor.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3533:info:destroot copying modules/pymol/experimenting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3534:info:destroot copying modules/pymol/exporting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3535:info:destroot copying modules/pymol/externing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3536:info:destroot copying modules/pymol/feedingback.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3537:info:destroot copying modules/pymol/fitting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3538:info:destroot copying modules/pymol/gui.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3539:info:destroot copying modules/pymol/headering.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3540:info:destroot copying modules/pymol/helping.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3541:info:destroot copying modules/pymol/importing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3542:info:destroot copying modules/pymol/internal.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3543:info:destroot copying modules/pymol/invocation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3544:info:destroot copying modules/pymol/keyboard.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3545:info:destroot copying modules/pymol/keywords.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3546:info:destroot copying modules/pymol/locking.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3547:info:destroot copying modules/pymol/m4x.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3548:info:destroot copying modules/pymol/menu.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3549:info:destroot copying modules/pymol/monitoring.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3550:info:destroot copying modules/pymol/movie.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3551:info:destroot copying modules/pymol/moving.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3552:info:destroot copying modules/pymol/parser.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3553:info:destroot copying modules/pymol/parsing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3554:info:destroot copying modules/pymol/povray.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3555:info:destroot copying modules/pymol/preset.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3556:info:destroot copying modules/pymol/querying.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3557:info:destroot copying modules/pymol/rpc.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3558:info:destroot copying modules/pymol/selecting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3559:info:destroot copying modules/pymol/selector.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3560:info:destroot copying modules/pymol/setting.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3561:info:destroot copying modules/pymol/shortcut.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3562:info:destroot copying modules/pymol/util.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3563:info:destroot copying modules/pymol/vfont.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3564:info:destroot copying modules/pymol/viewing.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3565:info:destroot copying modules/pymol/wizarding.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3566:info:destroot copying modules/pymol/xray.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3567:info:destroot copying modules/pymol/xwin.py -> build/lib.macosx-10.9-x86_64-2.7/pymol
3568:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
3569:info:destroot copying modules/chempy/bmin/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
3570:info:destroot copying modules/chempy/bmin/commands.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
3571:info:destroot copying modules/chempy/bmin/realtime.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
3572:info:destroot copying modules/chempy/bmin/state.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
3573:info:destroot copying modules/chempy/bmin/util.py -> build/lib.macosx-10.9-x86_64-2.7/chempy/bmin
3574:info:destroot copying modules/chempy/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3575:info:destroot copying modules/chempy/arc.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3576:info:destroot copying modules/chempy/bond_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3577:info:destroot copying modules/chempy/bond_mmff.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3578:info:destroot copying modules/chempy/bonds.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3579:info:destroot copying modules/chempy/brick.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3580:info:destroot copying modules/chempy/cc1.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3581:info:destroot copying modules/chempy/cex.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3582:info:destroot copying modules/chempy/charge.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3583:info:destroot copying modules/chempy/cif.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3584:info:destroot copying modules/chempy/cpv.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3585:info:destroot copying modules/chempy/dictdb.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3586:info:destroot copying modules/chempy/gamess1.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3587:info:destroot copying modules/chempy/gms.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3588:info:destroot copying modules/chempy/hetatm.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3589:info:destroot copying modules/chempy/io.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3590:info:destroot copying modules/chempy/lst.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3591:info:destroot copying modules/chempy/mae.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3592:info:destroot copying modules/chempy/map.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3593:info:destroot copying modules/chempy/mass.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3594:info:destroot copying modules/chempy/mmd.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3595:info:destroot copying modules/chempy/models.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3596:info:destroot copying modules/chempy/mol.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3597:info:destroot copying modules/chempy/mol2.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3598:info:destroot copying modules/chempy/neighbor.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3599:info:destroot copying modules/chempy/pdb.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3600:info:destroot copying modules/chempy/pkl.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3601:info:destroot copying modules/chempy/place.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3602:info:destroot copying modules/chempy/protein.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3603:info:destroot copying modules/chempy/protein_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3604:info:destroot copying modules/chempy/protein_amber99.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3605:info:destroot copying modules/chempy/protein_mmff.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3606:info:destroot copying modules/chempy/protein_residues.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3607:info:destroot copying modules/chempy/sdf.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3608:info:destroot copying modules/chempy/solvate.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3609:info:destroot copying modules/chempy/water_amber.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3610:info:destroot copying modules/chempy/water_residues.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3611:info:destroot copying modules/chempy/xyz.py -> build/lib.macosx-10.9-x86_64-2.7/chempy
3612:info:destroot creating build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
3613:info:destroot copying modules/pymol/plugins/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
3614:info:destroot copying modules/pymol/plugins/installation.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
3615:info:destroot copying modules/pymol/plugins/legacysupport.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
3616:info:destroot copying modules/pymol/plugins/managergui.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
3617:info:destroot copying modules/pymol/plugins/repository.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/plugins
3618:info:destroot copying modules/pymol/opengl/__init__.py -> build/lib.macosx-10.9-x86_64-2.7/pymol/opengl
3619:info:destroot running build_ext
3620:info:destroot building 'pymol._cmd' extension
3621:info:destroot creating build/temp.macosx-10.9-x86_64-2.7
3622:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/ov
3623:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/ov/src
3624:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer0
3625:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer1
3626:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer2
3627:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer3
3628:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer4
3629:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/layer5
3630:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/modules
3631:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/modules/cealign
3632:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src
3633:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/build
3634:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/build/generated
3635:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib
3636:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc
3637:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins
3638:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin
3639:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src
3640:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/ov_utility.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/ov_utility.o -ffast-math -funroll-loops -O3 -g -fcommon
3641:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVOneToOne.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToOne.o -ffast-math -funroll-loops -O3 -g -fcommon
3642:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Matrix.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Matrix.o -ffast-math -funroll-loops -O3 -g -fcommon
3643:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Err.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Err.o -ffast-math -funroll-loops -O3 -g -fcommon
3644:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Pixmap.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Pixmap.o -ffast-math -funroll-loops -O3 -g -fcommon
3645:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Basis.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Basis.o -ffast-math -funroll-loops -O3 -g -fcommon
3646:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Extrude.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Extrude.o -ffast-math -funroll-loops -O3 -g -fcommon
3647:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Texture.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Texture.o -ffast-math -funroll-loops -O3 -g -fcommon
3648:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/ButMode.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/ButMode.o -ffast-math -funroll-loops -O3 -g -fcommon
3649:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVContext.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVContext.o -ffast-math -funroll-loops -O3 -g -fcommon
3650:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVHeap.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeap.o -ffast-math -funroll-loops -O3 -g -fcommon
3651:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Queue.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Queue.o -ffast-math -funroll-loops -O3 -g -fcommon
3652:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Feedback.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Feedback.o -ffast-math -funroll-loops -O3 -g -fcommon
3653:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVRandom.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVRandom.o -ffast-math -funroll-loops -O3 -g -fcommon
3654:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVHeapArray.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeapArray.o -ffast-math -funroll-loops -O3 -g -fcommon
3655:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Raw.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Raw.o -ffast-math -funroll-loops -O3 -g -fcommon
3656:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Block.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Block.o -ffast-math -funroll-loops -O3 -g -fcommon
3657:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVLexicon.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVLexicon.o -ffast-math -funroll-loops -O3 -g -fcommon
3658:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Tracker.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Tracker.o -ffast-math -funroll-loops -O3 -g -fcommon
3659:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Field.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Field.o -ffast-math -funroll-loops -O3 -g -fcommon
3660:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/ShaderMgr.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/ShaderMgr.o -ffast-math -funroll-loops -O3 -g -fcommon
3661:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c ov/src/OVOneToAny.c -o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToAny.o -ffast-math -funroll-loops -O3 -g -fcommon
3662:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/CGO.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/CGO.o -ffast-math -funroll-loops -O3 -g -fcommon
3663:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Triangle.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Triangle.o -ffast-math -funroll-loops -O3 -g -fcommon
3664:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUTHel12.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel12.o -ffast-math -funroll-loops -O3 -g -fcommon
3665:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Crystal.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Crystal.o -ffast-math -funroll-loops -O3 -g -fcommon
3666:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Isosurf.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Isosurf.o -ffast-math -funroll-loops -O3 -g -fcommon
3667:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUTHel18.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel18.o -ffast-math -funroll-loops -O3 -g -fcommon
3668:info:destroot layer0/ShaderMgr.c:521:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
3669:info:destroot   if (err = glGetError()){
3670:info:destroot       ~~~~^~~~~~~~~~~~~~
3671:info:destroot layer0/ShaderMgr.c:521:11: note: place parentheses around the assignment to silence this warning
3672:info:destroot   if (err = glGetError()){
3673:info:destroot           ^
3674:info:destroot       (                 )
3675:info:destroot layer0/ShaderMgr.c:521:11: note: use '==' to turn this assignment into an equality comparison
3676:info:destroot   if (err = glGetError()){
3677:info:destroot           ^
3678:info:destroot           ==
3679:info:destroot layer0/ShaderMgr.c:528:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
3680:info:destroot     if (err = glGetError()){
3681:info:destroot         ~~~~^~~~~~~~~~~~~~
3682:info:destroot layer0/ShaderMgr.c:528:13: note: place parentheses around the assignment to silence this warning
3683:info:destroot     if (err = glGetError()){
3684:info:destroot             ^
3685:info:destroot         (                 )
3686:info:destroot layer0/ShaderMgr.c:528:13: note: use '==' to turn this assignment into an equality comparison
3687:info:destroot     if (err = glGetError()){
3688:info:destroot             ^
3689:info:destroot             ==
3690:info:destroot layer0/ShaderMgr.c:827:14: warning: unused variable 'err' [-Wunused-variable]
3691:info:destroot       GLenum err ;
3692:info:destroot              ^
3693:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontType.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontType.o -ffast-math -funroll-loops -O3 -g -fcommon
3694:info:destroot layer1/CGO.c:1881:6: warning: unused variable 'ncolors' [-Wunused-variable]
3695:info:destroot         int ncolors = 0;
3696:info:destroot             ^
3697:info:destroot layer0/Isosurf.c:2211:1: warning: control reaches end of non-void function [-Wreturn-type]
3698:info:destroot }
3699:info:destroot ^
3700:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Font.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Font.o -ffast-math -funroll-loops -O3 -g -fcommon
3701:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Debug.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Debug.o -ffast-math -funroll-loops -O3 -g -fcommon
3702:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Deferred.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Deferred.o -ffast-math -funroll-loops -O3 -g -fcommon
3703:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT.o -ffast-math -funroll-loops -O3 -g -fcommon
3704:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/PConv.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/PConv.o -ffast-math -funroll-loops -O3 -g -fcommon
3705:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Movie.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Movie.o -ffast-math -funroll-loops -O3 -g -fcommon
3706:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/MemoryCache.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryCache.o -ffast-math -funroll-loops -O3 -g -fcommon
3707:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/MemoryDebug.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MemoryDebug.o -ffast-math -funroll-loops -O3 -g -fcommon
3708:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/MyPNG.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/MyPNG.o -ffast-math -funroll-loops -O3 -g -fcommon
3709:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT8x13.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT8x13.o -ffast-math -funroll-loops -O3 -g -fcommon
3710:info:destroot 3 warnings generated.
3711:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Sphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Sphere.o -ffast-math -funroll-loops -O3 -g -fcommon
3712:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUT9x15.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUT9x15.o -ffast-math -funroll-loops -O3 -g -fcommon
3713:info:destroot layer0/Sphere.c:34:20: warning: unused variable 'start_points' [-Wunused-const-variable]
3714:info:destroot static const float start_points[13][3] = {
3715:info:destroot                    ^
3716:info:destroot layer0/Sphere.c:49:18: warning: unused variable 'icosahedron' [-Wunused-const-variable]
3717:info:destroot static const int icosahedron[21][3] = {
3718:info:destroot                  ^
3719:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Pop.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Pop.o -ffast-math -funroll-loops -O3 -g -fcommon
3720:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/FontGLUTHel10.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/FontGLUTHel10.o -ffast-math -funroll-loops -O3 -g -fcommon
3721:info:destroot 2 warnings generated.
3722:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Tetsurf.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Tetsurf.o -ffast-math -funroll-loops -O3 -g -fcommon
3723:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/os_gl.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/os_gl.o -ffast-math -funroll-loops -O3 -g -fcommon
3724:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/ScrollBar.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/ScrollBar.o -ffast-math -funroll-loops -O3 -g -fcommon
3725:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/PyMOLObject.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/PyMOLObject.o -ffast-math -funroll-loops -O3 -g -fcommon
3726:info:destroot layer0/os_gl.c:99:59: warning: 'gluErrorString' is deprecated: first deprecated in OS X 10.9 [-Wdeprecated-declarations]
3727:info:destroot     printf("OpenGL-Error: Where? %s: %s\n", pos, (char *) gluErrorString(glerr));
3728:info:destroot                                                           ^
3729:info:destroot /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:260:24: note: 'gluErrorString' has been explicitly marked deprecated here
3730:info:destroot extern const GLubyte * gluErrorString (GLenum error) OPENGL_DEPRECATED(10_0, 10_9);
3731:info:destroot                        ^
3732:info:destroot 1 warning generated.
3733:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Parse.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Parse.o -ffast-math -funroll-loops -O3 -g -fcommon
3734:info:destroot layer0/Parse.c:173:10: warning: array subscript is of type 'char' [-Wchar-subscripts]
3735:info:destroot       buf[blen] = 0;
3736:info:destroot          ^~~~~
3737:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Ortho.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Ortho.o -ffast-math -funroll-loops -O3 -g -fcommon
3738:info:destroot 1 warning generated.
3739:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/TypeFace.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/TypeFace.o -ffast-math -funroll-loops -O3 -g -fcommon
3740:info:destroot 1 warning generated.
3741:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Map.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Map.o -ffast-math -funroll-loops -O3 -g -fcommon
3742:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Seq.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Seq.o -ffast-math -funroll-loops -O3 -g -fcommon
3743:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Util.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Util.o -ffast-math -funroll-loops -O3 -g -fcommon
3744:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/View.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/View.o -ffast-math -funroll-loops -O3 -g -fcommon
3745:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Vector.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Vector.o -ffast-math -funroll-loops -O3 -g -fcommon
3746:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Ray.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Ray.o -ffast-math -funroll-loops -O3 -g -fcommon
3747:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Match.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Match.o -ffast-math -funroll-loops -O3 -g -fcommon
3748:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Setting.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Setting.o -ffast-math -funroll-loops -O3 -g -fcommon
3749:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/GadgetSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/GadgetSet.o -ffast-math -funroll-loops -O3 -g -fcommon
3750:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Wizard.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Wizard.o -ffast-math -funroll-loops -O3 -g -fcommon
3751:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectGadgetRamp.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadgetRamp.o -ffast-math -funroll-loops -O3 -g -fcommon
3752:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/P.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/P.o -ffast-math -funroll-loops -O3 -g -fcommon
3753:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer0/Word.c -o build/temp.macosx-10.9-x86_64-2.7/layer0/Word.o -ffast-math -funroll-loops -O3 -g -fcommon
3754:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectAlignment.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectAlignment.o -ffast-math -funroll-loops -O3 -g -fcommon
3755:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/AtomInfo.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/AtomInfo.o -ffast-math -funroll-loops -O3 -g -fcommon
3756:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectGroup.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGroup.o -ffast-math -funroll-loops -O3 -g -fcommon
3757:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectSlice.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSlice.o -ffast-math -funroll-loops -O3 -g -fcommon
3758:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMap.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMap.o -ffast-math -funroll-loops -O3 -g -fcommon
3759:info:destroot In file included from layer2/ObjectMap.c:42:
3760:info:destroot In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17:
3761:info:destroot In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:
3762:info:destroot /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by "          "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
3763:info:destroot #warning "Using deprecated NumPy API, disable it by " \
3764:info:destroot  ^
3765:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectCallback.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCallback.o -ffast-math -funroll-loops -O3 -g -fcommon
3766:info:destroot layer2/ObjectMap.c:2684:5: warning: implicit declaration of function 'UtilNCopy' is invalid in C99 [-Wimplicit-function-declaration]
3767:info:destroot     UtilNCopy(ms->Symmetry->SpaceGroup, space_group_numbers[ispg], WordLength);
3768:info:destroot     ^
3769:info:destroot In file included from layer2/ObjectMap.c:42:
3770:info:destroot In file included from /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:26:
3771:info:destroot /opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include/numpy/__multiarray_api.h:1629:1: warning: unused function '_import_array' [-Wunused-function]
3772:info:destroot _import_array(void)
3773:info:destroot ^
3774:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDihedral.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDihedral.o -ffast-math -funroll-loops -O3 -g -fcommon
3775:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Shaker.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Shaker.o -ffast-math -funroll-loops -O3 -g -fcommon
3776:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectCGO.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectCGO.o -ffast-math -funroll-loops -O3 -g -fcommon
3777:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectSurface.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectSurface.o -ffast-math -funroll-loops -O3 -g -fcommon
3778:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/CoordSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/CoordSet.o -ffast-math -funroll-loops -O3 -g -fcommon
3779:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDistDash.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistDash.o -ffast-math -funroll-loops -O3 -g -fcommon
3780:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Symmetry.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Symmetry.o -ffast-math -funroll-loops -O3 -g -fcommon
3781:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectDist.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectDist.o -ffast-math -funroll-loops -O3 -g -fcommon
3782:info:destroot 1 warning generated.
3783:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Character.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Character.o -ffast-math -funroll-loops -O3 -g -fcommon
3784:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDistLabel.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDistLabel.o -ffast-math -funroll-loops -O3 -g -fcommon
3785:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Text.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Text.o -ffast-math -funroll-loops -O3 -g -fcommon
3786:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/DistSet.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/DistSet.o -ffast-math -funroll-loops -O3 -g -fcommon
3787:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectVolume.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectVolume.o -ffast-math -funroll-loops -O3 -g -fcommon
3788:info:destroot layer1/Character.c:267:18: warning: unused variable 'vertexVals' [-Wunused-variable]
3789:info:destroot           const GLfloat vertexVals [] = {
3790:info:destroot                         ^
3791:info:destroot layer1/Character.c:273:18: warning: unused variable 'texVals' [-Wunused-variable]
3792:info:destroot           const GLfloat texVals [] = {
3793:info:destroot                         ^
3794:info:destroot 2 warnings generated.
3795:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Color.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Color.o -ffast-math -funroll-loops -O3 -g -fcommon
3796:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectGadget.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectGadget.o -ffast-math -funroll-loops -O3 -g -fcommon
3797:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepDot.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepDot.o -ffast-math -funroll-loops -O3 -g -fcommon
3798:info:destroot layer2/ObjectVolume.c:73:19: warning: unused variable 'oms' [-Wunused-variable]
3799:info:destroot   ObjectMapState *oms = NULL;
3800:info:destroot                   ^
3801:info:destroot layer2/ObjectVolume.c:471:9: warning: '&&' within '||' [-Wlogical-op-parentheses]
3802:info:destroot         && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) {
3803:info:destroot         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3804:info:destroot layer2/ObjectVolume.c:471:9: note: place parentheses around the '&&' expression to silence this warning
3805:info:destroot         && vs->Ramp[5 * (vs->RampSize - 1)] == 359.f) {
3806:info:destroot         ^
3807:info:destroot layer2/ObjectVolume.c:452:51: warning: expression result unused [-Wunused-value]
3808:info:destroot       a, vs->RefreshFlag, vs->ResurfaceFlag ENDFD(G);
3809:info:destroot                                                   ^
3810:info:destroot layer2/ObjectVolume.c:435:14: warning: unused variable 'map' [-Wunused-variable]
3811:info:destroot   ObjectMap *map = NULL;
3812:info:destroot              ^
3813:info:destroot layer2/ObjectVolume.c:695:10: warning: unused variable 'j' [-Wunused-variable]
3814:info:destroot   int i, j, ci[] = {
3815:info:destroot          ^
3816:info:destroot layer2/ObjectVolume.c:891:89: warning: '&&' within '||' [-Wlogical-op-parentheses]
3817:info:destroot         CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f);
3818:info:destroot                                                                    ~~ ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
3819:info:destroot layer2/ObjectVolume.c:891:89: note: place parentheses around the '&&' expression to silence this warning
3820:info:destroot         CShaderPrg_Set1f(shaderPrg, "fogIsSolidColor", bg_gradient || bg_image_filename && bg_image_filename[0] ? 0.f : 1.f);
3821:info:destroot                                                                                         ^
3822:info:destroot                                                                       (                                        )
3823:info:destroot layer2/ObjectVolume.c:726:8: warning: unused variable 'n' [-Wunused-variable]
3824:info:destroot   int *n = NULL;
3825:info:destroot        ^
3826:info:destroot layer2/ObjectVolume.c:1330:9: warning: unused variable 'min_val' [-Wunused-variable]
3827:info:destroot   float min_val, max_val;
3828:info:destroot         ^
3829:info:destroot layer2/ObjectVolume.c:1330:18: warning: unused variable 'max_val' [-Wunused-variable]
3830:info:destroot   float min_val, max_val;
3831:info:destroot                  ^
3832:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepMesh.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepMesh.o -ffast-math -funroll-loops -O3 -g -fcommon
3833:info:destroot layer1/Color.c:3069:16: warning: unused variable 'result' [-Wunused-variable]
3834:info:destroot   unsigned int result;
3835:info:destroot                ^
3836:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepWireBond.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepWireBond.o -ffast-math -funroll-loops -O3 -g -fcommon
3837:info:destroot 9 warnings generated.
3838:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepAngle.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepAngle.o -ffast-math -funroll-loops -O3 -g -fcommon
3839:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepEllipsoid.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepEllipsoid.o -ffast-math -funroll-loops -O3 -g -fcommon
3840:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepCartoon.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCartoon.o -ffast-math -funroll-loops -O3 -g -fcommon
3841:info:destroot 1 warning generated.
3842:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Control.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Control.o -ffast-math -funroll-loops -O3 -g -fcommon
3843:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepLabel.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepLabel.o -ffast-math -funroll-loops -O3 -g -fcommon
3844:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepNonbonded.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbonded.o -ffast-math -funroll-loops -O3 -g -fcommon
3845:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Rep.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Rep.o -ffast-math -funroll-loops -O3 -g -fcommon
3846:info:destroot 3 warnings generated.
3847:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMesh.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMesh.o -ffast-math -funroll-loops -O3 -g -fcommon
3848:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/PlugIOManager.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/PlugIOManager.o -ffast-math -funroll-loops -O3 -g -fcommon
3849:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/Sculpt.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/Sculpt.o -ffast-math -funroll-loops -O3 -g -fcommon
3850:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/PopUp.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/PopUp.o -ffast-math -funroll-loops -O3 -g -fcommon
3851:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepNonbondedSphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepNonbondedSphere.o -ffast-math -funroll-loops -O3 -g -fcommon
3852:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer1/Scene.c -o build/temp.macosx-10.9-x86_64-2.7/layer1/Scene.o -ffast-math -funroll-loops -O3 -g -fcommon
3853:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Seeker.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Seeker.o -ffast-math -funroll-loops -O3 -g -fcommon
3854:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepRibbon.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepRibbon.o -ffast-math -funroll-loops -O3 -g -fcommon
3855:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer5/main.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/main.o -ffast-math -funroll-loops -O3 -g -fcommon
3856:info:destroot layer1/Scene.c:9193:7: warning: 'gluPerspective' is deprecated: first deprecated in OS X 10.9 - "Use GLKMatrix4MakePerspective" [-Wdeprecated-declarations]
3857:info:destroot       gluPerspective(fov, aspRat, I->FrontSafe, I->BackSafe);
3858:info:destroot       ^
3859:info:destroot /System/Library/Frameworks/OpenGL.framework/Headers/glu.h:278:13: note: 'gluPerspective' has been explicitly marked deprecated here
3860:info:destroot extern void gluPerspective (GLdouble fovy, GLdouble aspect, GLdouble zNear, GLdouble zFar) OPENGL_DEPRECATED_MSG(10_0, 10_9, "Use GLKMatrix4MakePerspective");
3861:info:destroot             ^
3862:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMolecule.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule.o -ffast-math -funroll-loops -O3 -g -fcommon
3863:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer5/PyMOL.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/PyMOL.o -ffast-math -funroll-loops -O3 -g -fcommon
3864:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepSphere.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSphere.o -ffast-math -funroll-loops -O3 -g -fcommon
3865:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Selector.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Selector.o -ffast-math -funroll-loops -O3 -g -fcommon
3866:info:destroot layer5/PyMOL.c:959:37: warning: unused function 'return_status' [-Wunused-function]
3867:info:destroot CC_INLINE static PyMOLreturn_status return_status(int status)
3868:info:destroot                                     ^
3869:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/SculptCache.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/SculptCache.o -ffast-math -funroll-loops -O3 -g -fcommon
3870:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/VFont.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/VFont.o -ffast-math -funroll-loops -O3 -g -fcommon
3871:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepCylBond.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepCylBond.o -ffast-math -funroll-loops -O3 -g -fcommon
3872:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/RepSurface.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/RepSurface.o -ffast-math -funroll-loops -O3 -g -fcommon
3873:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Editor.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Editor.o -ffast-math -funroll-loops -O3 -g -fcommon
3874:info:destroot layer2/RepCylBond.c:2361:13: warning: unused function 'subdivide' [-Wunused-function]
3875:info:destroot static void subdivide(int n, float *x, float *y)
3876:info:destroot             ^
3877:info:destroot layer2/RepSurface.c:4281:31: warning: unused function 'SurfaceJobAtomInfoVLAFromPyTuple' [-Wunused-function]
3878:info:destroot OV_INLINE SurfaceJobAtomInfo *SurfaceJobAtomInfoVLAFromPyTuple(PyObject * tuple)
3879:info:destroot                               ^
3880:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer3/Executive.c -o build/temp.macosx-10.9-x86_64-2.7/layer3/Executive.o -ffast-math -funroll-loops -O3 -g -fcommon
3881:info:destroot 1 warning generated.
3882:info:destroot layer3/Executive.c:4495:50: warning: data argument not used by format string [-Wformat-extra-args]
3883:info:destroot       " GetHistogram-Error: wrong object type.", objName ENDFB(G);
3884:info:destroot       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  ^
3885:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3886:info:destroot layer3/Executive.c:5898:19: warning: incompatible pointer to integer conversion assigning to 'int' from 'CSymmetry *' [-Wint-conversion]
3887:info:destroot   ok_assert(1, ok = symmetry);
3888:info:destroot                   ^ ~~~~~~~~
3889:info:destroot layer0/Err.h:32:31: note: expanded from macro 'ok_assert'
3890:info:destroot #define ok_assert(x, c) {if(!(c)) ok_raise(x);}
3891:info:destroot                               ^
3892:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c:43:
3893:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: unused function 'symmetry_expand' [-Wunused-function]
3894:info:destroot static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
3895:info:destroot            ^
3896:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:830:13: warning: unused function 'eatline' [-Wunused-function]
3897:info:destroot static void eatline(FILE * fd, int n)
3898:info:destroot             ^
3899:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:841:13: warning: unused function 'eatwhitelines' [-Wunused-function]
3900:info:destroot static void eatwhitelines(FILE *file) {
3901:info:destroot             ^
3902:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: unused function 'iswhiteline' [-Wunused-function]
3903:info:destroot static int iswhiteline(char *s) {
3904:info:destroot            ^
3905:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: unused function 'strtoupper' [-Wunused-function]
3906:info:destroot static char *strtoupper(char *s) {
3907:info:destroot              ^
3908:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:957:12: warning: unused function 'goto_keyline' [-Wunused-function]
3909:info:destroot static int goto_keyline(FILE *file, ...) {
3910:info:destroot            ^
3911:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: unused function 'have_keyline' [-Wunused-function]
3912:info:destroot static int have_keyline(FILE *file, const char *keystring1,
3913:info:destroot            ^
3914:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function]
3915:info:destroot static void thisline(FILE *file) {
3916:info:destroot             ^
3917:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function]
3918:info:destroot static void whereami(FILE *file) {
3919:info:destroot             ^
3920:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:433:18: warning: unused function 'init_qmdata' [-Wunused-function]
3921:info:destroot static qmdata_t* init_qmdata(qmdata_t *data) {
3922:info:destroot                  ^
3923:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:466:27: warning: unused function 'add_wavefunction' [-Wunused-function]
3924:info:destroot static qm_wavefunction_t* add_wavefunction(qm_timestep_t *ts) {
3925:info:destroot                           ^
3926:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: unused function 'replace_wavefunction' [-Wunused-function]
3927:info:destroot static void replace_wavefunction(qm_timestep_t *ts, int n) {
3928:info:destroot             ^
3929:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: unused function 'del_wavefunction' [-Wunused-function]
3930:info:destroot static void del_wavefunction(qm_timestep_t *ts) {
3931:info:destroot             ^
3932:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:535:13: warning: unused function 'angular_momentum_expon' [-Wunused-function]
3933:info:destroot static void angular_momentum_expon(int  *ang_mom_expon,
3934:info:destroot             ^
3935:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function]
3936:info:destroot static void print_matrix4(const float mat[16]) {
3937:info:destroot             ^
3938:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: unused function 'fpexpftoc' [-Wunused-function]
3939:info:destroot static int fpexpftoc(char *ftocstr) {
3940:info:destroot            ^
3941:info:destroot 1 warning generated.
3942:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3943:info:destroot 16 warnings generated.
3944:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3945:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3946:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3947:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:
3948:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:890:12: warning: unused function 'iswhiteline' [-Wunused-function]
3949:info:destroot static int iswhiteline(char *s) {
3950:info:destroot            ^
3951:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:896:14: warning: unused function 'strtoupper' [-Wunused-function]
3952:info:destroot static char *strtoupper(char *s) {
3953:info:destroot              ^
3954:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function]
3955:info:destroot static void thisline(FILE *file) {
3956:info:destroot             ^
3957:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function]
3958:info:destroot static void whereami(FILE *file) {
3959:info:destroot             ^
3960:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function]
3961:info:destroot static void print_matrix4(const float mat[16]) {
3962:info:destroot             ^
3963:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1023:12: warning: unused function 'fpexpftoc' [-Wunused-function]
3964:info:destroot static int fpexpftoc(char *ftocstr) {
3965:info:destroot            ^
3966:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:162:
3967:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function]
3968:info:destroot static const char *get_pte_label(const int idx)
3969:info:destroot                    ^
3970:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function]
3971:info:destroot static float get_pte_mass(const int idx)
3972:info:destroot              ^
3973:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function]
3974:info:destroot static float get_pte_vdw_radius(const int idx)
3975:info:destroot              ^
3976:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
3977:info:destroot static int get_pte_idx(const char *label)
3978:info:destroot            ^
3979:info:destroot contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:997:13: warning: unused function 'print_input_data' [-Wunused-function]
3980:info:destroot static void print_input_data(qmdata_t *data) {
3981:info:destroot             ^
3982:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3983:info:destroot 1 warning generated.
3984:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3985:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer5/TestPyMOL.c -o build/temp.macosx-10.9-x86_64-2.7/layer5/TestPyMOL.o -ffast-math -funroll-loops -O3 -g -fcommon
3986:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
3987:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:51:
3988:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fastio.h:468:12: warning: unused function 'fio_read_int32' [-Wunused-function]
3989:info:destroot static int fio_read_int32(fio_fd fd, int *i) {
3990:info:destroot            ^
3991:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fastio.h:472:12: warning: unused function 'fio_write_str' [-Wunused-function]
3992:info:destroot static int fio_write_str(fio_fd fd, const char *str) {
3993:info:destroot            ^
3994:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c:60:
3995:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
3996:info:destroot static void swap2_unaligned(void *v, long ndata) {
3997:info:destroot             ^
3998:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
3999:info:destroot static void swap2_aligned(void *v, long ndata) {
4000:info:destroot             ^
4001:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o build/temp.macosx-10.9-x86_64-2.7/modules/cealign/src/ccealignmodule.o -ffast-math -funroll-loops -O3 -g -fcommon
4002:info:destroot 4 warnings generated.
4003:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4004:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c:33:
4005:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
4006:info:destroot static int get_pte_idx(const char *label)
4007:info:destroot            ^
4008:info:destroot 1 warning generated.
4009:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o -ffast-math -funroll-loops -O3 -g -fcommon
4010:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4011:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4012:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:
4013:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/fortread.h:28:
4014:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4015:info:destroot static void swap2_unaligned(void *v, long ndata) {
4016:info:destroot             ^
4017:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4018:info:destroot static void swap4_unaligned(void *v, long ndata) {
4019:info:destroot             ^
4020:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4021:info:destroot static void swap8_unaligned(void *v, long ndata) {
4022:info:destroot             ^
4023:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4024:info:destroot static void swap2_aligned(void *v, long ndata) {
4025:info:destroot             ^
4026:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4027:info:destroot static void swap8_aligned(void *v, long ndata) {
4028:info:destroot             ^
4029:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c:29:
4030:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function]
4031:info:destroot static int fort_eat_recmark(FILE *ifp, int recmarklen) {
4032:info:destroot            ^
4033:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function]
4034:info:destroot static int fort_get_endian_reclen(int reclen, int word0, int word1,
4035:info:destroot            ^
4036:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:103:12: warning: unused function 'fortread_4' [-Wunused-function]
4037:info:destroot static int fortread_4(void *dest, int n, int swap, FILE *fd) {
4038:info:destroot            ^
4039:info:destroot 11 warnings generated.
4040:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o -ffast-math -funroll-loops -O3 -g -fcommon
4041:info:destroot In file included from modules/cealign/src/ccealignmodule.cpp:32:
4042:info:destroot In file included from modules/cealign/src/ccealignmodule.H:37:
4043:info:destroot In file included from modules/cealign/src/tnt/tnt.h:43:
4044:info:destroot modules/cealign/src/tnt/tnt_matrix.h:549:15: warning: unused variable 'N' [-Wunused-variable]
4045:info:destroot     Subscript N = A.num_cols();
4046:info:destroot               ^
4047:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4048:info:destroot 8 warnings generated.
4049:info:destroot contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:403:16: warning: unused variable 'bszmask' [-Wunused-variable]
4050:info:destroot     fio_size_t bszmask;
4051:info:destroot                ^
4052:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4053:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:87:
4054:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:
4055:info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: unused function 'hash_delete' [-Wunused-function]
4056:info:destroot VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) {
4057:info:destroot                     ^
4058:info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: unused function 'hash_stats' [-Wunused-function]
4059:info:destroot VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) {
4060:info:destroot                        ^
4061:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c:88:
4062:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4063:info:destroot static void swap2_unaligned(void *v, long ndata) {
4064:info:destroot             ^
4065:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4066:info:destroot static void swap4_unaligned(void *v, long ndata) {
4067:info:destroot             ^
4068:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4069:info:destroot static void swap8_unaligned(void *v, long ndata) {
4070:info:destroot             ^
4071:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4072:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4073:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:42:
4074:info:destroot contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: unused function 'vasp_timestep_unitcell' [-Wunused-function]
4075:info:destroot static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
4076:info:destroot             ^
4077:info:destroot 1 warning generated.
4078:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4079:info:destroot 1 warning generated.
4080:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4081:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:41:
4082:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4083:info:destroot static int get_pte_idx_from_string(const char *label) {
4084:info:destroot            ^
4085:info:destroot 1 warning generated.
4086:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4087:info:destroot 6 warnings generated.
4088:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4089:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:42:
4090:info:destroot contrib/uiuc/plugins/molfile_plugin/src/vaspplugin.h:111:13: warning: unused function 'vasp_timestep_unitcell' [-Wunused-function]
4091:info:destroot static void vasp_timestep_unitcell(molfile_timestep_t *ts, vasp_plugindata_t *data)
4092:info:destroot             ^
4093:info:destroot contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:7: warning: unused variable 's_expon' [-Wunused-variable]
4094:info:destroot         char s_expon[128], s_coeff1[128], s_coeff2[128];
4095:info:destroot              ^
4096:info:destroot contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:21: warning: unused variable 's_coeff1' [-Wunused-variable]
4097:info:destroot         char s_expon[128], s_coeff1[128], s_coeff2[128];
4098:info:destroot                            ^
4099:info:destroot contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:828:36: warning: unused variable 's_coeff2' [-Wunused-variable]
4100:info:destroot         char s_expon[128], s_coeff1[128], s_coeff2[128];
4101:info:destroot                                           ^
4102:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4103:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:37:
4104:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function]
4105:info:destroot static const char *get_pte_label(const int idx)
4106:info:destroot                    ^
4107:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function]
4108:info:destroot static float get_pte_mass(const int idx)
4109:info:destroot              ^
4110:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function]
4111:info:destroot static float get_pte_vdw_radius(const int idx)
4112:info:destroot              ^
4113:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
4114:info:destroot static int get_pte_idx(const char *label)
4115:info:destroot            ^
4116:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:
4117:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:706:12: warning: unused function 'symmetry_expand' [-Wunused-function]
4118:info:destroot static int symmetry_expand(qm_atom_t **atoms, int numunique, int natoms,
4119:info:destroot            ^
4120:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1001:12: warning: unused function 'have_keyline' [-Wunused-function]
4121:info:destroot static int have_keyline(FILE *file, const char *keystring1,
4122:info:destroot            ^
4123:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1072:13: warning: unused function 'thisline' [-Wunused-function]
4124:info:destroot static void thisline(FILE *file) {
4125:info:destroot             ^
4126:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:1092:13: warning: unused function 'whereami' [-Wunused-function]
4127:info:destroot static void whereami(FILE *file) {
4128:info:destroot             ^
4129:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:485:13: warning: unused function 'replace_wavefunction' [-Wunused-function]
4130:info:destroot static void replace_wavefunction(qm_timestep_t *ts, int n) {
4131:info:destroot             ^
4132:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:502:13: warning: unused function 'del_wavefunction' [-Wunused-function]
4133:info:destroot static void del_wavefunction(qm_timestep_t *ts) {
4134:info:destroot             ^
4135:info:destroot contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:580:13: warning: unused function 'print_matrix4' [-Wunused-function]
4136:info:destroot static void print_matrix4(const float mat[16]) {
4137:info:destroot             ^
4138:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c:57:
4139:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4140:info:destroot static int get_pte_idx_from_string(const char *label) {
4141:info:destroot            ^
4142:info:destroot 1 warning generated.
4143:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4144:info:destroot 1 warning generated.
4145:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4146:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:41:
4147:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4148:info:destroot static int get_pte_idx_from_string(const char *label) {
4149:info:destroot            ^
4150:info:destroot 1 warning generated.
4151:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4152:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4153:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:41:
4154:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4155:info:destroot static int get_pte_idx_from_string(const char *label) {
4156:info:destroot            ^
4157:info:destroot 1 warning generated.
4158:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4159:info:destroot contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:82:23: warning: expression which evaluates to zero treated as a null pointer constant of type 'char *' [-Wnon-literal-null-conversion]
4160:info:destroot        if (end) end = '\0';
4161:info:destroot                       ^~~~
4162:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:48:
4163:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4164:info:destroot static int get_pte_idx_from_string(const char *label) {
4165:info:destroot            ^
4166:info:destroot 14 warnings generated.
4167:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4168:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4169:info:destroot 2 warnings generated.
4170:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4171:info:destroot 1 warning generated.
4172:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c build/generated/ShaderText.c -o build/temp.macosx-10.9-x86_64-2.7/build/generated/ShaderText.o -ffast-math -funroll-loops -O3 -g -fcommon
4173:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4174:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.cpp:44:
4175:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4176:info:destroot static void swap2_unaligned(void *v, long ndata) {
4177:info:destroot             ^
4178:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4179:info:destroot static void swap4_unaligned(void *v, long ndata) {
4180:info:destroot             ^
4181:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4182:info:destroot static void swap8_unaligned(void *v, long ndata) {
4183:info:destroot             ^
4184:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4185:info:destroot static void swap2_aligned(void *v, long ndata) {
4186:info:destroot             ^
4187:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4188:info:destroot static void swap8_aligned(void *v, long ndata) {
4189:info:destroot             ^
4190:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4191:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:47:
4192:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4193:info:destroot static void swap2_unaligned(void *v, long ndata) {
4194:info:destroot             ^
4195:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4196:info:destroot static void swap4_unaligned(void *v, long ndata) {
4197:info:destroot             ^
4198:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4199:info:destroot static void swap8_unaligned(void *v, long ndata) {
4200:info:destroot             ^
4201:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4202:info:destroot static void swap2_aligned(void *v, long ndata) {
4203:info:destroot             ^
4204:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4205:info:destroot static void swap8_aligned(void *v, long ndata) {
4206:info:destroot             ^
4207:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:48:
4208:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function]
4209:info:destroot static int fort_eat_recmark(FILE *ifp, int recmarklen) {
4210:info:destroot            ^
4211:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function]
4212:info:destroot static int fort_get_endian_reclen(int reclen, int word0, int word1,
4213:info:destroot            ^
4214:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: unused function 'strnwscpy' [-Wunused-function]
4215:info:destroot static void strnwscpy(char *target, const char *source, const int len) {
4216:info:destroot             ^
4217:info:destroot 8 warnings generated.
4218:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4219:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4220:info:destroot 5 warnings generated.
4221:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4222:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parmplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4223:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:40:
4224:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4225:info:destroot static void swap2_unaligned(void *v, long ndata) {
4226:info:destroot             ^
4227:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4228:info:destroot static void swap4_unaligned(void *v, long ndata) {
4229:info:destroot             ^
4230:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4231:info:destroot static void swap8_unaligned(void *v, long ndata) {
4232:info:destroot             ^
4233:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4234:info:destroot static void swap8_aligned(void *v, long ndata) {
4235:info:destroot             ^
4236:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:42:
4237:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
4238:info:destroot static int get_pte_idx(const char *label)
4239:info:destroot            ^
4240:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4241:info:destroot static int get_pte_idx_from_string(const char *label) {
4242:info:destroot            ^
4243:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4244:info:destroot 4 warnings generated.
4245:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4246:info:destroot contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:135:7: warning: unused variable 'retval' [-Wunused-variable]
4247:info:destroot   int retval;
4248:info:destroot       ^
4249:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.cpp:45:
4250:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/hash.h:37:
4251:info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:183:21: warning: unused function 'hash_delete' [-Wunused-function]
4252:info:destroot VMDEXTERNSTATIC int hash_delete(hash_t *tptr, const char *key) {
4253:info:destroot                     ^
4254:info:destroot contrib/uiuc/plugins/molfile_plugin/src/hash.c:270:24: warning: unused function 'hash_stats' [-Wunused-function]
4255:info:destroot VMDEXTERNSTATIC char * hash_stats(hash_t *tptr) {
4256:info:destroot                        ^
4257:info:destroot 2 warnings generated.
4258:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4259:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp:51:
4260:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4261:info:destroot static void swap2_unaligned(void *v, long ndata) {
4262:info:destroot             ^
4263:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4264:info:destroot static void swap4_unaligned(void *v, long ndata) {
4265:info:destroot             ^
4266:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4267:info:destroot static void swap8_unaligned(void *v, long ndata) {
4268:info:destroot             ^
4269:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4270:info:destroot static void swap2_aligned(void *v, long ndata) {
4271:info:destroot             ^
4272:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4273:info:destroot static void swap8_aligned(void *v, long ndata) {
4274:info:destroot             ^
4275:info:destroot 5 warnings generated.
4276:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4277:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:63:
4278:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4279:info:destroot static void swap4_unaligned(void *v, long ndata) {
4280:info:destroot             ^
4281:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4282:info:destroot static void swap8_unaligned(void *v, long ndata) {
4283:info:destroot             ^
4284:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: unused function 'swap4_aligned' [-Wunused-function]
4285:info:destroot static void swap4_aligned(void *v, long ndata) {
4286:info:destroot             ^
4287:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4288:info:destroot static void swap8_aligned(void *v, long ndata) {
4289:info:destroot             ^
4290:info:destroot 3 warnings generated.
4291:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o -ffast-math -funroll-loops -O3 -g -fcommon
4292:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:59:
4293:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4294:info:destroot static void swap2_unaligned(void *v, long ndata) {
4295:info:destroot             ^
4296:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4297:info:destroot static void swap4_unaligned(void *v, long ndata) {
4298:info:destroot             ^
4299:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4300:info:destroot static void swap8_unaligned(void *v, long ndata) {
4301:info:destroot             ^
4302:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4303:info:destroot static void swap2_aligned(void *v, long ndata) {
4304:info:destroot             ^
4305:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4306:info:destroot static void swap8_aligned(void *v, long ndata) {
4307:info:destroot             ^
4308:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:60:
4309:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:36:12: warning: unused function 'fort_eat_recmark' [-Wunused-function]
4310:info:destroot static int fort_eat_recmark(FILE *ifp, int recmarklen) {
4311:info:destroot            ^
4312:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:55:12: warning: unused function 'fort_get_endian_reclen' [-Wunused-function]
4313:info:destroot static int fort_get_endian_reclen(int reclen, int word0, int word1,
4314:info:destroot            ^
4315:info:destroot contrib/uiuc/plugins/molfile_plugin/src/fortread.h:133:13: warning: unused function 'strnwscpy' [-Wunused-function]
4316:info:destroot static void strnwscpy(char *target, const char *source, const int len) {
4317:info:destroot             ^
4318:info:destroot 4 warnings generated.
4319:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4320:info:destroot contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:85:14: warning: unused variable 'data' [-Wunused-variable]
4321:info:destroot   mmcifdata *data = (mmcifdata *)mydata;
4322:info:destroot              ^
4323:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:64:
4324:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:95:20: warning: unused function 'get_pte_label' [-Wunused-function]
4325:info:destroot static const char *get_pte_label(const int idx)
4326:info:destroot                    ^
4327:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:102:14: warning: unused function 'get_pte_mass' [-Wunused-function]
4328:info:destroot static float get_pte_mass(const int idx)
4329:info:destroot              ^
4330:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:109:14: warning: unused function 'get_pte_vdw_radius' [-Wunused-function]
4331:info:destroot static float get_pte_vdw_radius(const int idx)
4332:info:destroot              ^
4333:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:133:12: warning: unused function 'get_pte_idx' [-Wunused-function]
4334:info:destroot static int get_pte_idx(const char *label)
4335:info:destroot            ^
4336:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4337:info:destroot static int get_pte_idx_from_string(const char *label) {
4338:info:destroot            ^
4339:info:destroot contrib/uiuc/plugins/molfile_plugin/src/mmcif.cpp:98:14: warning: unused function 'open_mmcif_write' [-Wunused-function]
4340:info:destroot static void *open_mmcif_write(const char *filename, const char *filetype,
4341:info:destroot              ^
4342:info:destroot 7 warnings generated.
4343:info:destroot 8 warnings generated.
4344:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4345:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4346:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4347:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:53:
4348:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4349:info:destroot static void swap2_unaligned(void *v, long ndata) {
4350:info:destroot             ^
4351:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4352:info:destroot static void swap4_unaligned(void *v, long ndata) {
4353:info:destroot             ^
4354:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4355:info:destroot static void swap8_unaligned(void *v, long ndata) {
4356:info:destroot             ^
4357:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4358:info:destroot static void swap2_aligned(void *v, long ndata) {
4359:info:destroot             ^
4360:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.cpp:30:
4361:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/Gromacs.h:48:
4362:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4363:info:destroot static void swap2_unaligned(void *v, long ndata) {
4364:info:destroot             ^
4365:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4366:info:destroot static void swap4_unaligned(void *v, long ndata) {
4367:info:destroot             ^
4368:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4369:info:destroot static void swap8_unaligned(void *v, long ndata) {
4370:info:destroot             ^
4371:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4372:info:destroot static void swap2_aligned(void *v, long ndata) {
4373:info:destroot             ^
4374:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/Cmd.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Cmd.o -ffast-math -funroll-loops -O3 -g -fcommon
4375:info:destroot 4 warnings generated.
4376:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4377:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4378:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4379:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4380:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:42:
4381:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4382:info:destroot static void swap2_unaligned(void *v, long ndata) {
4383:info:destroot             ^
4384:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4385:info:destroot static void swap4_unaligned(void *v, long ndata) {
4386:info:destroot             ^
4387:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4388:info:destroot static void swap8_unaligned(void *v, long ndata) {
4389:info:destroot             ^
4390:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4391:info:destroot static void swap2_aligned(void *v, long ndata) {
4392:info:destroot             ^
4393:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4394:info:destroot static void swap8_aligned(void *v, long ndata) {
4395:info:destroot             ^
4396:info:destroot 5 warnings generated.
4397:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4398:info:destroot layer4/Cmd.c:5985:29: warning: '&&' within '||' [-Wlogical-op-parentheses]
4399:info:destroot       if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) {
4400:info:destroot              ~~ ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4401:info:destroot layer4/Cmd.c:5985:29: note: place parentheses around the '&&' expression to silence this warning
4402:info:destroot       if(ray || !G->HaveGUI && (!SceneGetCopyType(G) || width || height)) {
4403:info:destroot                             ^
4404:info:destroot                 (                                                       )
4405:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4406:info:destroot contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:7: warning: unused variable 'x' [-Wunused-variable]
4407:info:destroot   int x, y, z, xsize, ysize, zsize, xysize, total;
4408:info:destroot       ^
4409:info:destroot contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:10: warning: unused variable 'y' [-Wunused-variable]
4410:info:destroot   int x, y, z, xsize, ysize, zsize, xysize, total;
4411:info:destroot          ^
4412:info:destroot contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:277:13: warning: unused variable 'z' [-Wunused-variable]
4413:info:destroot   int x, y, z, xsize, ysize, zsize, xysize, total;
4414:info:destroot             ^
4415:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.cpp:36:
4416:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4417:info:destroot static void swap2_unaligned(void *v, long ndata) {
4418:info:destroot             ^
4419:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:46:13: warning: unused function 'swap4_unaligned' [-Wunused-function]
4420:info:destroot static void swap4_unaligned(void *v, long ndata) {
4421:info:destroot             ^
4422:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4423:info:destroot static void swap8_unaligned(void *v, long ndata) {
4424:info:destroot             ^
4425:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4426:info:destroot static void swap2_aligned(void *v, long ndata) {
4427:info:destroot             ^
4428:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4429:info:destroot static void swap8_aligned(void *v, long ndata) {
4430:info:destroot             ^
4431:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4432:info:destroot 8 warnings generated.
4433:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4434:info:destroot contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:680:44: warning: field 'eno' is uninitialized when used here [-Wuninitialized]
4435:info:destroot       : std::runtime_error(text + strerror(eno)), eno(_eno){}
4436:info:destroot                                            ^
4437:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4438:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:47:
4439:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4440:info:destroot static void swap2_unaligned(void *v, long ndata) {
4441:info:destroot             ^
4442:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:65:13: warning: unused function 'swap8_unaligned' [-Wunused-function]
4443:info:destroot static void swap8_unaligned(void *v, long ndata) {
4444:info:destroot             ^
4445:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4446:info:destroot static void swap2_aligned(void *v, long ndata) {
4447:info:destroot             ^
4448:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4449:info:destroot static void swap8_aligned(void *v, long ndata) {
4450:info:destroot             ^
4451:info:destroot 4 warnings generated.
4452:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4453:info:destroot 4 warnings generated.
4454:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4455:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:70:
4456:info:destroot contrib/uiuc/plugins/molfile_plugin/src/vmddir.h:137:12: warning: unused function 'vmd_file_is_executable' [-Wunused-function]
4457:info:destroot static int vmd_file_is_executable(const char * filename) {
4458:info:destroot            ^
4459:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:71:
4460:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:32:13: warning: unused function 'swap2_unaligned' [-Wunused-function]
4461:info:destroot static void swap2_unaligned(void *v, long ndata) {
4462:info:destroot             ^
4463:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:96:13: warning: unused function 'swap2_aligned' [-Wunused-function]
4464:info:destroot static void swap2_aligned(void *v, long ndata) {
4465:info:destroot             ^
4466:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:110:13: warning: unused function 'swap4_aligned' [-Wunused-function]
4467:info:destroot static void swap4_aligned(void *v, long ndata) {
4468:info:destroot             ^
4469:info:destroot contrib/uiuc/plugins/molfile_plugin/src/endianswap.h:124:13: warning: unused function 'swap8_aligned' [-Wunused-function]
4470:info:destroot static void swap8_aligned(void *v, long ndata) {
4471:info:destroot             ^
4472:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer2/ObjectMolecule2.c -o build/temp.macosx-10.9-x86_64-2.7/layer2/ObjectMolecule2.o -ffast-math -funroll-loops -O3 -g -fcommon
4473:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4474:info:destroot In file included from contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.cpp:37:
4475:info:destroot contrib/uiuc/plugins/molfile_plugin/src/periodic_table.h:160:12: warning: unused function 'get_pte_idx_from_string' [-Wunused-function]
4476:info:destroot static int get_pte_idx_from_string(const char *label) {
4477:info:destroot            ^
4478:info:destroot 2 warnings generated.
4479:info:destroot 1 warning generated.
4480:info:destroot contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1883:9: warning: unused variable 'last_ctnumber' [-Wunused-variable]
4481:info:destroot     int last_ctnumber = -1;
4482:info:destroot         ^
4483:info:destroot 1 warning generated.
4484:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/Export.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Export.o -ffast-math -funroll-loops -O3 -g -fcommon
4485:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c layer4/Menu.c -o build/temp.macosx-10.9-x86_64-2.7/layer4/Menu.o -ffast-math -funroll-loops -O3 -g -fcommon
4486:info:destroot 6 warnings generated.
4487:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dxplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4488:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -D_PYMOL_LIBPNG -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_PYMOL_GL_CALLLISTS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE -DNO_MMLIBS -D_CGO_DRAWARRAYS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/opt/local/include/freetype2 -I/usr/include -I/usr/X11/include -I/usr/X11/include/freetype2 -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o -ffast-math -funroll-loops -O3 -g -fcommon
4489:info:destroot contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:207:10: warning: unused variable 'l' [-Wunused-variable]
4490:info:destroot   int z, l, sentinel, convcnt;
4491:info:destroot          ^
4492:info:destroot contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:220:7: warning: unused variable 'leftover' [-Wunused-variable]
4493:info:destroot   int leftover = (nperslice - (nlines - 1) * 6);
4494:info:destroot       ^
4495:info:destroot 2 warnings generated.
4496:info:destroot 1 warning generated.
4497:info:destroot /usr/bin/clang++ -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib -Wl,-headerpad_max_install_names -L/opt/local/lib/db48 build/temp.macosx-10.9-x86_64-2.7/ov/src/ov_utility.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVContext.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeap.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVHeapArray.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVLexicon.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToAny.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVOneToOne.o build/temp.macosx-10.9-x86_64-2.7/ov/src/OVRandom.o build/temp.macosx-10.9-x86_64-2.7/layer0/Block.o build/temp.macosx-10.9-x86_64-2.7/layer0/Crystal.o build/temp.macosx-10.9-x86_64-2.7/layer0/Debug.o build/temp.macosx-10.9-x86_64-2.7/layer0/Deferred.o build/temp.macosx-10.9-x86_64-2.7/layer0/Err.o build/temp.macosx-10.9-x86_64-2.7/layer0/Feedback.o build/temp.macosx-10.9-x86_64-2.7/layer0/Field.o build/temp.macosx-10.9-x86_64-2.7/layer0/Isosurf.o 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build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/ccp4plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dxplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gromacsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mdfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mmcif.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mol2plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parm7plugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/parmplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/spiderplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o build/temp.macosx-10.9-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xsfplugin.o -L/opt/local/lib -L/usr/lib -L/usr/X11/lib -lpng -lfreetype -lGLEW -lGL -lGLU -lglut -o build/lib.macosx-10.9-x86_64-2.7/pymol/_cmd.so
4498:info:destroot building 'chempy.champ._champ' extension
4499:info:destroot creating build/temp.macosx-10.9-x86_64-2.7/contrib/champ
4500:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/champ.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ.o
4501:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/champ_module.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ_module.o
4502:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/chiral.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/chiral.o
4503:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/feedback2.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/feedback2.o
4504:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/err2.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/err2.o
4505:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/os_memory.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/os_memory.o
4506:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/sort.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/sort.o
4507:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/list.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/list.o
4508:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/strblock.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/strblock.o
4509:info:destroot /usr/bin/clang -fno-strict-aliasing -fno-common -dynamic -pipe -Os -fwrapv -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Icontrib/champ -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c contrib/champ/vla.c -o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/vla.o
4510:info:destroot /usr/bin/clang -bundle -undefined dynamic_lookup -isysroot / -L/opt/local/lib -Wl,-headerpad_max_install_names -L/opt/local/lib/db48 build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/champ_module.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/chiral.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/err2.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/feedback2.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/list.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/os_memory.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/sort.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/strblock.o build/temp.macosx-10.9-x86_64-2.7/contrib/champ/vla.o -o build/lib.macosx-10.9-x86_64-2.7/chempy/champ/_champ.so
4511:info:destroot running install_lib
4512:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework
4513:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions
4514:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7
4515:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib
4516:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7
4517:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages
4518:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4519:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4520:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/arc.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4521:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
4522:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
4523:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/commands.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
4524:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/realtime.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
4525:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/state.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
4526:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bmin/util.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin
4527:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bond_amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4528:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bond_mmff.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4529:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/bonds.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4530:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/brick.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4531:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cc1.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4532:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cex.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4533:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
4534:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
4535:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/_champ.so -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
4536:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/amber99.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
4537:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/assign.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
4538:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/champ/formal_charges.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ
4539:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/charge.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4540:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cif.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4541:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/cpv.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4542:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/dictdb.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4543:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fast
4544:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/fast/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fast
4545:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fragments
4546:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/fragments/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fragments
4547:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/gamess1.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4548:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/gms.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4549:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/hetatm.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4550:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/io.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4551:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/lst.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4552:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mae.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4553:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/map.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4554:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mass.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4555:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mmd.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4556:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/models.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4557:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mol.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4558:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/mol2.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4559:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/neighbor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4560:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/pdb.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4561:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/pkl.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4562:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/place.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4563:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4564:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4565:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_amber99.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4566:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_mmff.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4567:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/protein_residues.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4568:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/sdf.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4569:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/solvate.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4570:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
4571:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
4572:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
4573:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/keyword.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
4574:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/realtime.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
4575:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/tinker/state.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker
4576:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/water_amber.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4577:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/water_residues.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4578:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/chempy/xyz.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy
4579:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4580:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4581:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/ColorEditor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4582:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/Demo.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4583:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/PMGApp.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4584:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/PyMOLMapLoad.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4585:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/SetEditor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4586:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/Setting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4587:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins
4588:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins
4589:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/demo
4590:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/demo/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/demo
4591:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
4592:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
4593:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/builder.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
4594:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/skins/normal/ModalWindow.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal
4595:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
4596:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
4597:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/apbs_tools.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
4598:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/startup/remote_pdb_load.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup
4599:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/TextEditor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4600:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_tk/volume.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk
4601:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_wx
4602:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pmg_wx/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_wx
4603:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4604:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4605:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/_cmd.so -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4606:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/api.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4607:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/callback.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4608:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/cgo.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4609:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/checking.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4610:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/cmd.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4611:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/colorramping.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4612:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/commanding.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4613:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/completing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4614:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/computing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4615:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/constants.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4616:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/constants_palette.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4617:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/contrib
4618:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/contrib/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/contrib
4619:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/controlling.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4620:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/creating.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4621:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/editing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4622:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/editor.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4623:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed
4624:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed
4625:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/epymol
4626:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/epymol/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/epymol
4627:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/wxpymol
4628:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/embed/wxpymol/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/wxpymol
4629:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/experimenting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4630:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/exporting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4631:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/externing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4632:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/feedingback.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4633:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/fitting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4634:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/gui.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4635:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/headering.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4636:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/helping.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4637:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/importing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4638:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/internal.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4639:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/invocation.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4640:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/keyboard.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4641:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/keywords.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4642:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/locking.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4643:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/m4x.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4644:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/menu.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4645:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/monitoring.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4646:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/movie.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4647:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/moving.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4648:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl
4649:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl
4650:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/gl
4651:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/gl/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/gl
4652:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glu
4653:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glu/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glu
4654:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glut
4655:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/opengl/glut/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glut
4656:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/parser.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4657:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/parsing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4658:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins
4659:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins
4660:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/installation.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins
4661:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/legacysupport.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins
4662:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/managergui.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins
4663:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/plugins/repository.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins
4664:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/povray.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4665:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/preset.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4666:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/querying.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4667:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/rpc.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4668:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/selecting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4669:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/selector.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4670:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/setting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4671:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/shortcut.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4672:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/util.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4673:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/vfont.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4674:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/viewing.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4675:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4676:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4677:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/annotation.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4678:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/appearance.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4679:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/benchmark.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4680:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/box.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4681:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/charge.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4682:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/cleanup.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4683:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/demo.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4684:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/density.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4685:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/distance.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4686:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/dragging.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4687:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/fedora.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4688:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/filter.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4689:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/label.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4690:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/measurement.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4691:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/message.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4692:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/mutagenesis.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4693:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/pair_fit.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4694:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/pseudoatom.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4695:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/renaming.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4696:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/sculpting.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4697:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/security.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4698:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/stereodemo.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4699:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizard/toggle.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard
4700:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/wizarding.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4701:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/xray.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4702:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol/xwin.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol
4703:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2
4704:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol2/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2
4705:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol2/cmd2.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2
4706:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/pymol2/make_cmd2.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2
4707:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web
4708:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/web/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web
4709:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/examples
4710:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/web/examples/__init__.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/examples
4711:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/web/examples/justhttpd.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/examples
4712:info:destroot copying build/lib.macosx-10.9-x86_64-2.7/web/pymolhttpd.py -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web
4713:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc
4714:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/arc.py to arc.pyc
4715:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc
4716:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc
4717:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc
4718:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc
4719:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc
4720:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc
4721:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc
4722:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc
4723:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/brick.py to brick.pyc
4724:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc
4725:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/cex.py to cex.pyc
4726:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc
4727:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc
4728:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc
4729:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc
4730:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/charge.py to charge.pyc
4731:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/cif.py to cif.pyc
4732:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc
4733:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc
4734:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc
4735:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc
4736:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc
4737:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/gms.py to gms.pyc
4738:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc
4739:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/io.py to io.pyc
4740:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/lst.py to lst.pyc
4741:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/mae.py to mae.pyc
4742:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/map.py to map.pyc
4743:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/mass.py to mass.pyc
4744:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc
4745:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/models.py to models.pyc
4746:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/mol.py to mol.pyc
4747:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc
4748:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc
4749:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc
4750:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc
4751:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/place.py to place.pyc
4752:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/protein.py to protein.pyc
4753:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc
4754:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc
4755:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc
4756:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc
4757:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc
4758:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc
4759:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc
4760:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc
4761:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc
4762:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc
4763:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc
4764:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc
4765:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc
4766:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc
4767:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc
4768:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc
4769:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc
4770:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc
4771:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc
4772:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc
4773:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc
4774:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc
4775:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc
4776:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc
4777:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc
4778:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc
4779:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc
4780:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc
4781:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/startup/remote_pdb_load.py to remote_pdb_load.pyc
4782:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc
4783:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc
4784:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pmg_wx/__init__.py to __init__.pyc
4785:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc
4786:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/api.py to api.pyc
4787:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/callback.py to callback.pyc
4788:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc
4789:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/checking.py to checking.pyc
4790:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc
4791:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc
4792:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc
4793:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/completing.py to completing.pyc
4794:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/computing.py to computing.pyc
4795:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/constants.py to constants.pyc
4796:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc
4797:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc
4798:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc
4799:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/creating.py to creating.pyc
4800:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/editing.py to editing.pyc
4801:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/editor.py to editor.pyc
4802:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc
4803:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc
4804:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc
4805:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc
4806:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc
4807:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/externing.py to externing.pyc
4808:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc
4809:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc
4810:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/gui.py to gui.pyc
4811:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/headering.py to headering.pyc
4812:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/helping.py to helping.pyc
4813:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/importing.py to importing.pyc
4814:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/internal.py to internal.pyc
4815:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc
4816:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc
4817:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc
4818:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/locking.py to locking.pyc
4819:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc
4820:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/menu.py to menu.pyc
4821:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc
4822:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/movie.py to movie.pyc
4823:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/moving.py to moving.pyc
4824:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc
4825:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc
4826:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc
4827:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc
4828:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/parser.py to parser.pyc
4829:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc
4830:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc
4831:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc
4832:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc
4833:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc
4834:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc
4835:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/povray.py to povray.pyc
4836:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/preset.py to preset.pyc
4837:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/querying.py to querying.pyc
4838:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc
4839:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc
4840:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/selector.py to selector.pyc
4841:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/setting.py to setting.pyc
4842:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc
4843:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/util.py to util.pyc
4844:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc
4845:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc
4846:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc
4847:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc
4848:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc
4849:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc
4850:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc
4851:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc
4852:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc
4853:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc
4854:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc
4855:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc
4856:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc
4857:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc
4858:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc
4859:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc
4860:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc
4861:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc
4862:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc
4863:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc
4864:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc
4865:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc
4866:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc
4867:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc
4868:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc
4869:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc
4870:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc
4871:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/xray.py to xray.pyc
4872:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc
4873:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2/__init__.py to __init__.pyc
4874:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2/cmd2.py to cmd2.pyc
4875:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol2/make_cmd2.py to make_cmd2.pyc
4876:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/__init__.py to __init__.pyc
4877:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/examples/__init__.py to __init__.pyc
4878:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/examples/justhttpd.py to justhttpd.pyc
4879:info:destroot byte-compiling /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/web/pymolhttpd.py to pymolhttpd.pyc
4880:info:destroot running install_egg_info
4881:info:destroot Writing /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol-1.7.1.1-py2.7.egg-info
4882:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/pymol_path
4883:info:destroot copying LICENSE -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/pymol_path
4884:info:destroot copying data -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/pymol_path/data
4885:info:destroot copying test -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/pymol_path/test
4886:info:destroot copying scripts -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/pymol_path/scripts
4887:info:destroot copying examples -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/pymol/pymol_path/examples
4888:info:destroot creating /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin
4889:info:destroot copying pymol -> /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin
4890:debug:destroot Executing proc-post-org.macports.destroot-destroot-0
4891:debug:destroot Executing proc-post-org.macports.destroot-destroot-1
4892:warn:destroot An activity was attempted outside sandbox: /.git
4893:warn:destroot An activity was attempted outside sandbox: /.git/objects
4894:warn:destroot An activity was attempted outside sandbox: /.svn
4895:warn:destroot An activity was attempted outside sandbox: /etc/subversion/config
4896:warn:destroot An activity was attempted outside sandbox: /etc/subversion/servers
4897:warn:destroot An activity was attempted outside sandbox: /objects
4898:warn:destroot An activity was attempted outside sandbox: /opt/.git
4899:warn:destroot An activity was attempted outside sandbox: /opt/.git/objects
4900:warn:destroot An activity was attempted outside sandbox: /opt/.svn
4901:warn:destroot An activity was attempted outside sandbox: /opt/objects
4902:warn:destroot An activity was attempted outside sandbox: /var/root/.CFUserTextEncoding
4903:error:destroot org.macports.destroot for port pymol returned: error copying "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports" to "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/bin/pymol": file already exists
4904:debug:destroot Error code: NONE
4905:debug:destroot Backtrace: error copying "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/pymol/setup/pymol_macports" to "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/work/destroot/opt/local/bin/pymol": file already exists
4906    while executing
4907"proc-post-org.macports.destroot-destroot-1 org.macports.destroot"
4908    ("eval" body line 1)
4909    invoked from within
4910"eval $post $targetname"
4911:info:destroot Warning: targets not executed for pymol: org.macports.activate org.macports.destroot org.macports.install
4912:notice:destroot Please see the log file for port pymol for details:
4913    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_pymol/pymol/main.log