source: trunk/dports/science/bowtie/Portfile

Last change on this file was 101239, checked in by ciserlohn@…, 5 years ago

bowtie: update to version 0.12.9 (#37335; maintainer timeout)

  • Property svn:eol-style set to native
  • Property svn:keywords set to Id
File size: 1.9 KB
Line 
1# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
2# $Id: Portfile 101239 2013-01-06 22:57:03Z ryandesign@macports.org $
3
4PortSystem          1.0
5
6name                bowtie
7version             0.12.9
8categories          science biology
9platforms           darwin
10maintainers         gmail.com:haroldpimentel
11license             Artistic-1 LGPL-3+
12
13description         an ultrafast, memory-efficient short read aligner
14
15long_description    Bowtie is ${description}. It aligns short DNA sequences \
16                    (reads) to the human genome at a rate of over 25 million \
17                    35-bp reads per hour. Bowtie indexes the genome with a \
18                    Burrows-Wheeler index to keep its memory footprint small: \
19                    typically about 2.2 GB for the human genome (2.9 GB for \
20                    paired-end).
21
22homepage            http://bowtie-bio.sourceforge.net/
23master_sites        sourceforge:project/bowtie-bio/${name}/${version}
24use_zip             yes
25extract.suffix      -src${extract.suffix}
26
27checksums           sha1    ce261d82695e6e97ffc1bc9c3f6651a9fbb2feba \
28                    rmd160  e75b41d3cfa0ff69bf4cc19038613d15a8702c5d
29
30depends_build       bin:md5sum:md5sha1sum
31
32use_configure       no
33
34variant universal {}
35
36build.target        allall
37build.args          CC=${configure.cc} CXX=${configure.cxx} \
38                    EXTRA_FLAGS="[get_canonical_archflags]"
39
40destroot {
41    xinstall -W ${worksrcpath} \
42        bowtie \
43        bowtie-debug \
44        bowtie-build \
45        bowtie-build-debug \
46        bowtie-inspect \
47        bowtie-inspect-debug \
48        ${destroot}${prefix}/bin
49   
50    xinstall -d ${destroot}${prefix}/share/doc/${name}
51    xinstall -m 644 -W ${worksrcpath} \
52        AUTHORS \
53        COPYING \
54        MANUAL \
55        NEWS \
56        TUTORIAL \
57        VERSION \
58        MANUAL.markdown \
59        ${destroot}${prefix}/share/doc/${name}
60}
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