Changeset 87941


Ignore:
Timestamp:
Dec 13, 2011, 6:02:01 PM (8 years ago)
Author:
macsforever2000@…
Message:

arb: maintainer update to version 5.3. Removed and added some patchfiles. (#32054)

Location:
trunk/dports/science/arb
Files:
3 added
7 deleted
2 edited

Legend:

Unmodified
Added
Removed
  • trunk/dports/science/arb/Portfile

    r83390 r87941  
    66name                    arb
    77epoch                   1
    8 version                 5.2
    9 revision                3
     8version                 5.3
    109categories              science
    1110maintainers             me.com:matt.cottrell
     
    2928extract.suffix          .tgz
    3029dist_subdir             ${name}/${version}
    31 worksrcdir              arbsrc_6779
    32 
    33 checksums               sha1    4ee493a16ece5231d46ed1071407c06e733d67c8 \
    34                         rmd160  d9d99d0ebadaa293091ff93f6ca588b2321bd8b0
     30worksrcdir              arbsrc_8210
     31
     32checksums               sha1    535b72bfbf99f498deee17824c1f167228ad2088 \
     33                        rmd160  d4b240da693f903d0e8bd59f4b1f1043b6935508
    3534
    3635depends_build           port:imake \
     
    5453                        patch-ARB-RNA3D_GlobalHeader.hxx.diff \
    5554                        patch-ARB-DARWIN.pl.diff \
    56                         patch-ARB-glpng.diff \
    57                         arb_intro.fig.diff \
    58                         patch-ARB-Flatio.diff \
    59                         patch-ARB-Zuk_to_gen.c.diff \
    60                         patch-ARB-count.c.diff \
    61                         patch-ARB-lsadt.c.diff \
    62                         patch-ARB-interface.c.diff
     55                        patch-ARB-intro.fig.diff \
     56                        patch-GDEHELP-Makefile.diff \
     57                        patch-ARB_GDEmenus.source.diff
    6358                       
    6459configure               {
     
    9994
    10095build.args              GCC=${configure.cc} \
    101                         GPP=${configure.cxx} \
    102                         CPPreal=${configure.cpp}
     96                        GPP=${configure.cxx}
    10397
    10498destroot.keepdirs       ${destroot}${prefix}/share/arb/lib/pts
     
    188182type arb to start ARB
    189183
     184***********************************************************
     185
    190186A demo data base is located at ${prefix}/share/arb/demo.arb
    191187
    192 ************************************************************************
    193188User generated macros, arb_tcp.dat and pt_servers have been preserved,
    194189but you should keep backups of these just in case.  They are located at:
     
    203198${prefix}/share/arb/lib/arb_tcp.dat.default
    204199
     200Use keys Control+Command Arrow Key to jump over bases
     201Use Keys Option Arrow Key to pull in bases across alignment gaps
     202Use the right Command Key plus a letter key to activate a menu item
     203
     204These notes can be viewed at any time by typing 'port notes arb'
     205
    205206Please cite: Wolfgang Ludwig, et al. (2004) ARB: a software environment for sequence data. Nucleic Acids Research. 32:1363-1371
    206207"
  • trunk/dports/science/arb/files/patch-ARB-makefile.diff

    r81222 r87941  
    6060 
    6161 ifdef DARWIN
    62 -       XLIBS := -L/usr/OpenMotif/lib -lXm -L$(XHOME)/lib -lpng -lXt -lX11 -lXext -lXp -lc -lXmu -lXi
     62-       XLIBS := -L/usr/OpenMotif/lib -lXm -L$(XHOME)/lib -lpng -lXt -lX11 -lXext -lc -lXmu -lXi
    6363+       XLIBS := -L$(XHOME)/lib -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi
    6464        XLIBS += -lGLU -lGL -Wl,-dylib_file,$(OSX_FW_OPENGL)/libGL.dylib:$(OSX_FW_OPENGL)/libGL.dylib
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