# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 # $Id: Portfile 150031 2016-07-08 21:19:04Z khindenburg@macports.org $ PortSystem 1.0 PortGroup github 1.0 github.setup arq5x bedtools2 2.26.0 v name bedtools categories science platforms darwin maintainers gmail.com:vandervelde.ag openmaintainer license GPL-2 description Utilities to perform basic operations on BED files long_description The BEDTools utilities allow one to address common genomics \ tasks such as finding feature overlaps and computing coverage. \ The utilities are largely based on four widely-used file formats: \ BED, GFF/GTF, VCF, and SAM/BAM. checksums rmd160 880f6c0711f500f24a5f0161ef209c739c3cc735 \ sha256 ed9e9305ed88838125de53abee0b65ef5decbd75beeeb3adb0cb656b87a965b2 depends_build port:py27-sphinx depends_lib port:zlib use_configure no variant universal {} configure.optflags -O2 configure.cxxflags-append -Wall -D_FILE_OFFSET_BITS=64 -fPIC build.args CXX=${configure.cxx} \ CXXFLAGS="${configure.cxxflags} [get_canonical_archflags cxx]" use_parallel_build no post-build { system -W ${worksrcpath}/docs "${build.cmd} SPHINXBUILD=${prefix}/bin/sphinx-build-2.7 html man" } destroot { xinstall -m 755 {*}[glob ${worksrcpath}/bin/*] ${destroot}${prefix}/bin/ xinstall -d ${destroot}${prefix}/share/doc/${name} xinstall -d ${destroot}${prefix}/share/${name}/genomes xinstall -m 644 -W ${worksrcpath} \ LICENSE README.md RELEASE_HISTORY \ ${destroot}${prefix}/share/doc/${name} xinstall -m 644 {*}[glob ${worksrcpath}/genomes/*] ${destroot}${prefix}/share/${name}/genomes/ copy ${worksrcpath}/docs/_build/html ${destroot}${prefix}/share/doc/${name}/html xinstall -m 644 ${worksrcpath}/docs/_build/man/bedtools.1 ${destroot}${prefix}/share/man/man1 } test.run yes