# $Id: Portfile 145139 2016-01-26 20:53:30Z mmoll@macports.org $

PortSystem 1.0

name                hmmer
version             3.1b2
epoch               2
categories          science
maintainers         mmoll openmaintainer
license             GPL-3
description         HMMER searches biological sequence databases for \
        homologous sequences.
long_description    HMMER searches biological sequence databases for \
        homologous sequences, using either single sequences or multiple \
        sequence alignments as queries. HMMER implements a technology \
        called "profile hidden Markov models" (profile HMMs). HMMER is \
        the software engine underlying many protein family domain \
        databases and large-scale annotation pipelines, including the \
        Pfam and SMART databases.
homepage            http://hmmer.org/
platforms           darwin
master_sites        http://eddylab.org/software/hmmer3/${version}/
checksums           md5     c8c141018bc0ccd7fc37b33f2b945d5f \
                    sha1    6f2f289e5baa808d22909eb122a9d067e301d0c7 \
                    rmd160  df4d2e9af1409d81e7ac66efb0d530b18180c070
use_parallel_build  no
livecheck.type      regex
livecheck.url       ${homepage}/download.html
livecheck.regex     The <strong>current version</strong> is HMMER <strong>(\[0-9.brc\]+)</strong>