# $Id: Portfile 20457 2006-11-03 15:12:00Z blair@macports.org $
PortSystem 1.0
name		ncbi_tools
version		20060507
description	blast is a set of tools for doing nucleotide and protein searches
maintainers	mrt5@mac.com
categories	science
platforms	darwin 
homepage	http://www.ncbi.nlm.nih.gov/blast/
fetch.use_epsv	no
master_sites	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/
distfiles       ncbi.tar.gz
checksums	md5 1c00462385fbf382c99ff65f34c0d09a
worksrcdir      
configure       {}
build.cmd       './ncbi/make/makedis.csh'
build.target
set binaries   "Psequin asn2ff asn2gb asn2idx asn2xml asndhuff asntool bl2bag.cgi bl2seq blast blast.REAL blast_cs.REAL blastall blastcl3 blastclust blastpgp cdscan checksub copymat ddv debruijn demo_regexp demo_regexp_grep dosimple entrcmd entrez2 errhdr fa2htgs fastacmd findspl formatdb formatrpsdb getfeat getmesh getpub getseq gil2bin idfetch impala indexpub makemat makeset megablast ncbisort nph-viewgif.cgi psiblast.REAL psiblast_cs.REAL rpsblast seedtop seqtest tbl2asn test_regexp testcore testobj testval udv vecscreen wblast2.REAL wblast2_cs.REAL"

set manpages	"Nentrez.1 Psequin.1 asn2asn.1 asn2ff.1 asn2gb.1 asn2xml.1 asndhuff.1 asntool.1 bl2seq.1 blast.1 blastall.1 blastcl3.1 blastclust.1 blastpgp.1 cdscan.1 checksub.1 copymat.1 ddv.1 debruijn.1 entrcmd.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 fmerge.1 formatdb.1 gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 idfetch.1 impala.1 indexpub.1 makemat.1 makeset.1 megablast.1 netentcf.1 rpsblast.1 seedtop.1 tbl2asn.1 udv.1 vecscreen.1"


destroot {
	xinstall -d 755 ${destroot}${prefix}/share/doc/${name}
	file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
	foreach binary ${binaries} {
		xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/ 
	}
	foreach manpage ${manpages} {
		xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/ 
	}
}

long_description	${description}