# $Id: Portfile,v 1.1 2004/12/01 16:56:42 michaelm Exp $
PortSystem 1.0
name		ncbi_tools
version		6.1
description	blast is a set of tools for doing nucleotide and protein searches
maintainers	michaelm@opendarwin.org
categories	science
platforms	darwin 
homepage	http://www.ncbi.nlm.nih.gov/blast/
master_sites	ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/
distfiles       ncbi.tar.gz
checksums	md5 3f82bce2a3ce549f055ff989a4b825ed
worksrcdir      
configure       {}
build.cmd       './ncbi/make/makedis.csh'
build.target
set binaries   "Psequin asn2ff asn2gb asn2idx asn2xml asndhuff asntool bl2bag.cgi bl2seq blast blast.REAL blast_cs.REAL blastall blastcl3 blastclust blastpgp cdscan checksub copymat ddv debruijn demo_regexp demo_regexp_grep dosimple entrcmd entrez2 errhdr fa2htgs fastacmd findspl formatdb formatrpsdb getfeat getmesh getpub getseq gil2bin idfetch impala indexpub makemat makeset megablast ncbisort nph-viewgif.cgi psiblast.REAL psiblast_cs.REAL rpsblast seedtop seqtest tbl2asn test_regexp testcore testobj testval udv vecscreen wblast2.REAL wblast2_cs.REAL"

set manpages	"Nentrez.1 Psequin.1 asn2asn.1 asn2ff.1 asn2gb.1 asn2xml.1 asndhuff.1 asntool.1 bl2seq.1 blast.1 blastall.1 blastcl3.1 blastclust.1 blastpgp.1 cdscan.1 checksub.1 copymat.1 ddv.1 debruijn.1 entrcmd.1 entrez2.1 errhdr.1 fa2htgs.1 fastacmd.1 findspl.1 fmerge.1 formatdb.1 gbseqget.1 getfeat.1 getmesh.1 getpub.1 gil2bin.1 idfetch.1 impala.1 indexpub.1 makemat.1 makeset.1 megablast.1 netentcf.1 rpsblast.1 seedtop.1 tbl2asn.1 udv.1 vecscreen.1"


destroot {
	xinstall -d 755 ${destroot}${prefix}/share/doc/${name}
	file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}
	foreach binary ${binaries} {
		xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/ 
	}
	foreach manpage ${manpages} {
		xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/ 
	}
}

long_description	${description}