# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 # $Id: Portfile 97685 2012-09-12 02:49:07Z jmr@macports.org $ PortSystem 1.0 name bowtie version 0.12.7 categories science biology platforms darwin maintainers gmail.com:haroldpimentel license Artistic-1 LGPL-3+ description an ultrafast, memory-efficient short read aligner long_description Bowtie is ${description}. It aligns short DNA sequences \ (reads) to the human genome at a rate of over 25 million \ 35-bp reads per hour. Bowtie indexes the genome with a \ Burrows-Wheeler index to keep its memory footprint small: \ typically about 2.2 GB for the human genome (2.9 GB for \ paired-end). homepage http://bowtie-bio.sourceforge.net/ master_sites sourceforge:project/bowtie-bio/${name}/${version} use_zip yes extract.suffix -src${extract.suffix} checksums sha1 0eb752db072a2da6fc6dac55d2ab825422e994ce \ rmd160 7b2210d4526c4818936b729b0e68f4c13a101fc6 depends_build bin:md5sum:md5sha1sum use_configure no variant universal {} build.target allall build.args CC=${configure.cc} CXX=${configure.cxx} \ EXTRA_FLAGS="[get_canonical_archflags]" destroot { xinstall -W ${worksrcpath} \ bowtie \ bowtie-debug \ bowtie-build \ bowtie-build-debug \ bowtie-inspect \ bowtie-inspect-debug \ ${destroot}${prefix}/bin xinstall -d ${destroot}${prefix}/share/doc/${name} xinstall -m 644 -W ${worksrcpath} \ AUTHORS \ COPYING \ MANUAL \ NEWS \ TUTORIAL \ VERSION \ MANUAL.markdown \ ${destroot}${prefix}/share/doc/${name} }