[localhost:~] beckiewilliams% bash bash-3.2$ sudo port uninstall installed Password: ---> Unable to uninstall/deactivate bzip2 @1.0.5_3, the following ports depend on it: ---> python26 @2.6.5_3 Error: Target org.macports.uninstall returned: Please uninstall the ports that depend on bzip2 first. Log for bzip2 is at: /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_bzip2_1.0.5_3/main.log Warning: Failed to execute portfile from registry for bzip2 @1.0.5_3 ---> Unable to uninstall/deactivate bzip2 @1.0.5_3, the following ports depend on it: ---> python26 @2.6.5_3 Error: port uninstall failed: Please uninstall the ports that depend on bzip2 first. bash-3.2$ sudo port uninstall python26 ---> Unable to uninstall/deactivate python26 @2.6.5_3, the following ports depend on it: ---> py26-distribute @0.6.14_0 Error: Target org.macports.uninstall returned: Please uninstall the ports that depend on python26 first. Log for python26 is at: /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_python26_2.6.5_3/main.log Warning: Failed to execute portfile from registry for python26 @2.6.5_3 ---> Unable to uninstall/deactivate python26 @2.6.5_3, the following ports depend on it: ---> py26-distribute @0.6.14_0 Error: port uninstall failed: Please uninstall the ports that depend on python26 first. bash-3.2$ sudo port uninstall active ---> Unable to uninstall/deactivate bzip2 @1.0.5_3, the following ports depend on it: ---> python26 @2.6.5_3 Error: Target org.macports.uninstall returned: Please uninstall the ports that depend on bzip2 first. Log for bzip2 is at: /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_bzip2_1.0.5_3/main.log Warning: Failed to execute portfile from registry for bzip2 @1.0.5_3 ---> Unable to uninstall/deactivate bzip2 @1.0.5_3, the following ports depend on it: ---> python26 @2.6.5_3 Error: port uninstall failed: Please uninstall the ports that depend on bzip2 first. bash-3.2$ port installed The following ports are currently installed: bzip2 @1.0.5_3 (active) curl @7.21.0_1+ssl (active) curl-ca-bundle @7.21.0_1 (active) db46 @4.6.21_6 (active) expat @2.0.1_0 (active) fontconfig @2.8.0_0 (active) freetype @2.4.1_0 (active) gdbm @1.8.3_2 (active) gettext @0.18.1.1_2 (active) git-core @1.7.2.1_0+doc (active) gmp @5.0.1_0 (active) gperf @3.0.4_0 (active) libiconv @1.13.1_0 (active) libidn @1.19_0 (active) libsvm @2.91_0+java (active) mpfr @3.0.0-p3_0 (active) ncurses @5.7_0 (active) ncursesw @5.7_0 (active) openssl @1.0.0a_0 (active) p5-error @0.17016_0 (active) perl5 @5.8.9_0 (active) perl5.8 @5.8.9_3 (active) pkgconfig @0.25_0 (active) popt @1.16_0 (active) py26-distribute @0.6.14_0 (active) python26 @2.6.5_3 (active) readline @6.1.000_1 (active) rsync @3.0.7_0 (active) sqlite3 @3.6.23.1_0 (active) tcl @8.5.8_0 (active) tk @8.5.8_0 (active) Xft2 @2.1.14_0 (active) xorg-bigreqsproto @1.1.0_0 (active) xorg-inputproto @2.0_0 (active) xorg-kbproto @1.0.4_0 (active) xorg-libX11 @1.3.4_0 (active) xorg-libXau @1.0.6_0 (active) xorg-libXdmcp @1.0.3_0 (active) xorg-libXext @1.1.2_0 (active) xorg-libXScrnSaver @1.2.0_0 (active) xorg-renderproto @0.11_0 (active) xorg-scrnsaverproto @1.2.0_0 (active) xorg-util-macros @1.10.0_0 (active) xorg-xcmiscproto @1.2.0_0 (active) xorg-xextproto @7.1.1_0 (active) xorg-xf86bigfontproto @1.2.0_0 (active) xorg-xproto @7.0.17_0 (active) xorg-xtrans @1.2.5_0 (active) xrender @0.9.6_0 (active) zlib @1.2.5_0 (active) bash-3.2$ port search gcc apple-gcc33 @1823 (lang) Apple's version of gcc 3.3 apple-gcc40 @5465 (lang) Apple's version of gcc 4.0 apple-gcc42 @5531 (lang) Apple's version of gcc 4.2 apple-gcc42-devel @5564 (lang) Updated version of Apple's version of gcc 4.2 arm-aout-gcc @3.3.6 (cross, devel) gcc cross-compilers for arm-aout, with newlib runtime library. arm-elf-gcc @4.5.0 (cross, devel) gcc cross-compilers for arm-elf, with newlib runtime library. arm-elf-gcc3 @3.4.6 (cross, devel) gcc 3.x cross-compilers for arm-elf, with newlib runtime library. arm-none-linux-gnueabi-gcc @2005q3-2 (cross, devel) gcc 3.x cross-compilers for arm-none-linux-gnueabi. arm-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for arm-rtems, with newlib runtime library. avr-gcc @4.0.2 (cross, devel) gcc cross-compilers for avr gcc33 @3.3.6 (lang) The GNU compiler collection gcc34 @3.4.6 (lang) The GNU compiler collection gcc40 @4.0.4 (lang) The GNU compiler collection gcc41 @4.1.2 (lang) The GNU compiler collection gcc42 @4.2.4 (lang) The GNU compiler collection gcc43 @4.3.5 (lang) The GNU compiler collection gcc44 @4.4.4 (lang) The GNU compiler collection gcc45 @4.5.0 (lang) The GNU compiler collection gcc46 @4.6-20100612 (lang) The GNU compiler collection, prerelease BETA gcc_select @0.1 (sysutils) Switch the default compiler gccmakedep @1.0.2 (x11, devel) Create dependencies in makefiles using 'gcc -M' gccxml @0.6.0 (lang) generates XML description of C++ code gccxml-devel @20090713 (lang) generates XML description of C++ code gnat-gcc @4.4.2 (lang) The GNU compiler collection with GNAT i386-elf-gcc @4.3.2 (cross, devel) gcc cross-compilers for i386-elf, with newlib runtime library. i386-mingw32-gcc @3.4.5-20060117-2 (cross, devel) Mingw32 cross-compiler for i386-Win32 i386-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for i386-rtems, with newlib runtime library. i960-rtems-gcc @3.2.3 (cross, devel) gcc cross-compilers for i960-rtems, with newlib runtime library. lcov @1.8 (devel) LCOV is a graphical front-end for GCC's coverage testing tool gcov. llvm-gcc42 @2.6 (lang) llvm is a next generation compiler infrastructure m68k-elf-gcc @3.4.6 (cross, devel) gcc cross-compilers for m68k-elf, with newlib runtime library. m68k-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for m68k-rtems, with newlib runtime library. mips-elf-gcc @3.4.6 (cross, devel) gcc cross-compilers for mips-elf, with newlib runtime library. mips-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for mips-rtems, with newlib runtime library. mipsel-linux-gcc34 @3.4.6 (cross) gcc cross compiler for mips-linux with uClib powerpc-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for powerpc-rtems, with newlib runtime library. py26-pygccxml @1.0.0 (python, devel) pygccxml is a python interface to gcc-xml sh-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for sh-rtems, with newlib runtime library. sparc-rtems-gcc @4.2.3 (cross, devel) gcc cross-compilers for sparc-rtems, with newlib runtime library. Found 39 ports. bash-3.2$ sudo port uninstall gcc44 bash-3.2$ sudo port uninstall bzip2 ---> Unable to uninstall/deactivate bzip2 @1.0.5_3, the following ports depend on it: ---> python26 @2.6.5_3 Error: Target org.macports.uninstall returned: Please uninstall the ports that depend on bzip2 first. Log for bzip2 is at: /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_bzip2_1.0.5_3/main.log Warning: Failed to execute portfile from registry for bzip2 @1.0.5_3 ---> Unable to uninstall/deactivate bzip2 @1.0.5_3, the following ports depend on it: ---> python26 @2.6.5_3 Error: port uninstall failed: Please uninstall the ports that depend on bzip2 first. bash-3.2$ sudo port uninstall python26 ---> Unable to uninstall/deactivate python26 @2.6.5_3, the following ports depend on it: ---> py26-distribute @0.6.14_0 Error: Target org.macports.uninstall returned: Please uninstall the ports that depend on python26 first. Log for python26 is at: /opt/local/var/macports/logs/_opt_local_var_macports_registry_portfiles_python26_2.6.5_3/main.log Warning: Failed to execute portfile from registry for python26 @2.6.5_3 ---> Unable to uninstall/deactivate python26 @2.6.5_3, the following ports depend on it: ---> py26-distribute @0.6.14_0 Error: port uninstall failed: Please uninstall the ports that depend on python26 first. bash-3.2$ ls /usr X11 include sbin X11R6 lib share X11R6 (from old Mac) libexec standalone bin llvm-gcc-4.2 texbin etc local bash-3.2$ ls /lib ls: /lib: No such file or directory bash-3.2$ ls lib ls: lib: No such file or directory bash-3.2$ ls /usr/lib bundle1.o charset.alias clang cron crt1.10.5.o crt1.10.6.o crt1.o dtrace dyld dylib1.10.5.o dylib1.o freeradius gcc gcrt1.o groff i686-apple-darwin10 info java lazydylib1.o libAPSimple.dylib libBSDPClient.A.dylib libBSDPClient.A_redoprebinding61.dylib libBSDPClient.A_redoprebinding95.dylib libBSDPClient.dylib libDHCPServer.A.dylib libDHCPServer.A_redoprebinding61.dylib libDHCPServer.A_redoprebinding95.dylib libDHCPServer.dylib libIOKit.A.dylib libIOKit.dylib libLTO.dylib libLanguageIdentifier.dylib libMallocDebug.A.dylib libMatch.1.dylib libMatch.dylib libPrintServiceQuota.1_redoprebinding61.dylib libPrintServiceQuota.1_redoprebinding95.dylib libSaturn.dylib libSaturnFE.dylib libScreenReader.dylib libSystem.B.dylib libSystem.B_debug.dylib libSystem.B_profile.dylib libSystem.dylib libSystemStubs.a libSystemStubs_debug.a libSystemStubs_profile.a libSystem_debug.dylib libSystem_profile.dylib libXplugin.1.0.dylib libXplugin.1.dylib libXplugin.1_redoprebinding61.dylib libXplugin.dylib libalias.A.dylib libalias.A_redoprebinding61.dylib libalias.A_redoprebinding95.dylib libalias.dylib libapr-1.0.3.8.dylib libapr-1.0.dylib libapr-1.dylib libaprutil-1.0.3.9.dylib libaprutil-1.0.dylib libaprutil-1.dylib libarchive.2.6.2.dylib libarchive.2.dylib libarchive.dylib libatlas.dylib libauditd.0.dylib libauditd.dylib libauto.dylib libblas.dylib libbsm.0.dylib libbsm.dylib libbz2.1.0.5.dylib libbz2.1.0.dylib libbz2.dylib libc.dylib libcblas.dylib libcharset.1.0.0.dylib libcharset.1.dylib libcharset.1_redoprebinding61.dylib libcharset.1_redoprebinding95.dylib libcharset.dylib libclapack.dylib libcom_err.dylib libcpp_kext.a libcrypto.0.9.7.dylib libcrypto.0.9.8.dylib libcrypto.0.9.dylib libcrypto.0.9_redoprebinding61.dylib libcrypto.0.9_redoprebinding95.dylib libcrypto.dylib libcups.2.dylib libcups.dylib libcupscgi.1.dylib libcupscgi.dylib libcupsdriver.1.dylib libcupsdriver.dylib libcupsimage.2.dylib libcupsimage.2_redoprebinding61.dylib libcupsimage.2_redoprebinding95.dylib libcupsimage.dylib libcupsmime.1.dylib libcupsmime.dylib libcupsppdc.1.dylib libcupsppdc.dylib libcurl.2.dylib libcurl.3.dylib libcurl.4.dylib libcurl.4.dylib (from old Mac) libcurl.dylib libcurses.dylib libdbm.dylib libdes425.dylib libdl.dylib libdtrace.dylib libedit.2.11.dylib libedit.2.dylib libedit.2_redoprebinding61.dylib libedit.2_redoprebinding95.dylib libedit.dylib libexpat.1.5.2.dylib libexpat.1.dylib libexpat.dylib libexslt.0.dylib libexslt.0_redoprebinding61.dylib libexslt.0_redoprebinding95.dylib libexslt.dylib libf77lapack.dylib libfcgi++.0.0.0.dylib libfcgi++.0.dylib libfcgi++.dylib libfcgi.0.0.0.dylib libfcgi.0.dylib libfcgi.dylib libffi.dylib libfl.a libform.5.4.dylib libform.5.4_redoprebinding61.dylib libform.5.4_redoprebinding95.dylib libform.dylib libgcc_s.1.dylib libgcc_s.10.4.dylib libgcc_s.10.5.dylib libgermantok.dylib libgimpprint.7_redoprebinding61.dylib libgmalloc.B.dylib libgmalloc.dylib libgssapi_krb5.dylib libgutenprint.2.0.3.dylib libgutenprint.2.dylib libgutenprint.dylib libhunspell-1.2.0.0.0.dylib libhunspell-1.2.0.dylib libhunspell-1.2.dylib libiconv.2.4.0.dylib libiconv.2.dylib libiconv.dylib libicucore.A.dylib libicucore.dylib libinfo.dylib libiodbc.2.1.18.dylib libiodbc.2.dylib libiodbc.2_redoprebinding61.dylib libiodbc.a libiodbc.dylib libiodbcinst.2.1.18.dylib libiodbcinst.2.dylib libiodbcinst.2_redoprebinding61.dylib libiodbcinst.a libiodbcinst.dylib libipsec.A.dylib libipsec.A_redoprebinding61.dylib libipsec.A_redoprebinding95.dylib libipsec.dylib libk5crypto.dylib libkmod.a libkmodc++.a libkrb4.dylib libkrb5.dylib libkrb524.dylib libkrb5support.dylib libl.a liblangid.dylib liblapack.dylib liblber.dylib libldap.dylib libldap_r.dylib libltdl.3.1.4.dylib libltdl.3.dylib libltdl.7.1.2.dylib libltdl.7.dylib libltdl.a libltdl.dylib libm.dylib libmca_common_sm.0.dylib libmca_common_sm.dylib libmecab.1.0.0.dylib libmecab.1.dylib libmecab.dylib libmenu.5.4.dylib libmenu.5.4_redoprebinding61.dylib libmenu.5.4_redoprebinding95.dylib libmenu.dylib libmpi.0.dylib libmpi.dylib libmpi_cxx.0.dylib libmpi_cxx.dylib libmx.A.dylib libmx.A_debug.dylib libmx.A_profile.dylib libmx.dylib libmx_debug.dylib libmx_profile.dylib libncurses.5.4.dylib libncurses.5.4_redoprebinding61.dylib libncurses.5.4_redoprebinding95.dylib libncurses.5.dylib libncurses.dylib libneon.27.1.3.dylib libneon.27.dylib libneon.dylib libnetsnmp.15.1.2.dylib libnetsnmp.15.dylib libnetsnmp.5.2.1.dylib libnetsnmp.5.dylib libnetsnmp.dylib libnetsnmpagent.15.1.2.dylib libnetsnmpagent.15.dylib libnetsnmpagent.dylib libnetsnmphelpers.15.1.2.dylib libnetsnmphelpers.15.dylib libnetsnmphelpers.dylib libnetsnmpmibs.15.1.2.dylib libnetsnmpmibs.15.dylib libnetsnmpmibs.dylib libnetsnmptrapd.15.1.2.dylib libnetsnmptrapd.15.dylib libnetsnmptrapd.dylib libobjc.A.dylib libobjc.dylib libodbc.a libopen-pal.0.dylib libopen-pal.dylib libopen-rte.0.dylib libopen-rte.dylib libpam.1.dylib libpam.1_redoprebinding61.dylib libpam.1_redoprebinding95.dylib libpam.2.dylib libpam.dylib libpanel.5.4.dylib libpanel.5.4_redoprebinding61.dylib libpanel.5.4_redoprebinding95.dylib libpanel.dylib libpcap.A.dylib libpcap.A_redoprebinding61.dylib libpcap.dylib libpcre.0.0.1.dylib libpcre.0.dylib libpcre.dylib libpcreposix.0.0.0.dylib libpcreposix.0.dylib libpcreposix.dylib libpoll.dylib libproc.dylib libproxyauth.dylib libpthread.dylib libpython.dylib libpython2.5.dylib libpython2.6.dylib libreadline.dylib libresolv.9.dylib libresolv.dylib librpcsvc.dylib libruby.1.dylib libruby.1_redoprebinding61.dylib libruby.1_redoprebinding95.dylib libruby.dylib libsandbox.1.dylib libsandbox.dylib libsasl2.2.0.1.dylib libsasl2.2.0.15.dylib libsasl2.2.0.21.dylib libsasl2.2.0.22.dylib libsasl2.2.dylib libsasl2.dylib libsqlite3.0.dylib libsqlite3.dylib libssl.0.9.7.dylib libssl.0.9.8.dylib libssl.0.9.dylib libssl.0.9_redoprebinding61.dylib libssl.0.9_redoprebinding95.dylib libssl.dylib libstdc++-static.a libstdc++.6.0.9.dylib libstdc++.6.dylib libsupc++.a libsvn_client-1.0.0.0.dylib libsvn_client-1.0.dylib libsvn_client-1.dylib libsvn_delta-1.0.0.0.dylib libsvn_delta-1.0.dylib libsvn_delta-1.dylib libsvn_diff-1.0.0.0.dylib libsvn_diff-1.0.dylib libsvn_diff-1.dylib libsvn_fs-1.0.0.0.dylib libsvn_fs-1.0.dylib libsvn_fs-1.dylib libsvn_fs_fs-1.0.0.0.dylib libsvn_fs_fs-1.0.dylib libsvn_fs_fs-1.dylib libsvn_fs_util-1.0.0.0.dylib libsvn_fs_util-1.0.dylib libsvn_fs_util-1.dylib libsvn_ra-1.0.0.0.dylib libsvn_ra-1.0.dylib libsvn_ra-1.dylib libsvn_ra_local-1.0.0.0.dylib libsvn_ra_local-1.0.dylib libsvn_ra_local-1.dylib libsvn_ra_neon-1.0.0.0.dylib libsvn_ra_neon-1.0.dylib libsvn_ra_neon-1.dylib libsvn_ra_svn-1.0.0.0.dylib libsvn_ra_svn-1.0.dylib libsvn_ra_svn-1.dylib libsvn_repos-1.0.0.0.dylib libsvn_repos-1.0.dylib libsvn_repos-1.dylib libsvn_subr-1.0.0.0.dylib libsvn_subr-1.0.dylib libsvn_subr-1.dylib libsvn_swig_ruby-1.0.0.0.dylib libsvn_swig_ruby-1.0.dylib libsvn_swig_ruby-1.dylib libsvn_wc-1.0.0.0.dylib libsvn_wc-1.0.dylib libsvn_wc-1.dylib libtcl.dylib libtcl8.5.dylib libtclstub8.5.a libtermcap.dylib libtidy.A.dylib libtidy.A_redoprebinding61.dylib libtidy.A_redoprebinding95.dylib libtidy.dylib libtk.dylib libtk8.5.dylib libtkstub8.5.a libutil.dylib libutil1.0.dylib libwrap.7.6.dylib libwrap.7.dylib libwrap.a libwrap.dylib libwx_macud-2.8.0.5.0.dylib libwx_macud-2.8.0.dylib libwx_macud-2.8.dylib libwx_macud_fl-2.8.0.5.0.dylib libwx_macud_fl-2.8.0.dylib libwx_macud_fl-2.8.dylib libwx_macud_foldbar-2.8.0.5.0.dylib libwx_macud_foldbar-2.8.0.dylib libwx_macud_foldbar-2.8.dylib libwx_macud_gizmos-2.8.0.5.0.dylib libwx_macud_gizmos-2.8.0.dylib libwx_macud_gizmos-2.8.dylib libwx_macud_gizmos_xrc-2.8.0.5.0.dylib libwx_macud_gizmos_xrc-2.8.0.dylib libwx_macud_gizmos_xrc-2.8.dylib libwx_macud_gl-2.8.0.5.0.dylib libwx_macud_gl-2.8.0.dylib libwx_macud_gl-2.8.dylib libwx_macud_netutils-2.8.0.5.0.dylib libwx_macud_netutils-2.8.0.dylib libwx_macud_netutils-2.8.dylib libwx_macud_ogl-2.8.0.5.0.dylib libwx_macud_ogl-2.8.0.dylib libwx_macud_ogl-2.8.dylib libwx_macud_plot-2.8.0.5.0.dylib libwx_macud_plot-2.8.0.dylib libwx_macud_plot-2.8.dylib libwx_macud_stc-2.8.0.5.0.dylib libwx_macud_stc-2.8.0.dylib libwx_macud_stc-2.8.dylib libwx_macud_svg-2.8.0.5.0.dylib libwx_macud_svg-2.8.0.dylib libwx_macud_svg-2.8.dylib libxar.1.dylib libxar.dylib libxml2.2.7.3.dylib libxml2.2.dylib libxml2.dylib libxslt-plugins libxslt.1.dylib libxslt.1_redoprebinding61.dylib libxslt.1_redoprebinding95.dylib libxslt.dylib liby.a libz.1.1.3.dylib libz.1.2.3.dylib libz.1.dylib libz.dylib mecab openmpi pam php pkgconfig podcastproducer powerpc-apple-darwin10 python2.5 python2.6 ruby sa samba sasl2 sqlite3 system tclConfig.sh tkConfig.sh wx xml2Conf.sh xsltConf.sh zsh bash-3.2$ sudo port install py26-pymvpa Password: ---> Computing dependencies for py26-pymvpa ---> Dependencies to be installed: py26-hcluster py26-numpy atlas gcc44 gzip texinfo lzmautils fftw-3 py26-nose py26-matplotlib libpng py26-configobj py26-dateutil py26-tz py26-pyobjc-cocoa py26-pyobjc py26-py2app py26-bdist_mpkg py26-macholib py26-modulegraph py26-altgraph py26-pynifti nifticlib cmake swig-python bison m4 gsed python_select swig py26-pywavelets py26-cython py26-scipy SuiteSparse metis shogun glpk hdf5-18 szip ---> Building gcc44 Error: Target org.macports.build returned: shell command failed Log for gcc44 is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_gcc44/main.log Error: The following dependencies failed to build: py26-hcluster py26-numpy atlas gcc44 gzip texinfo lzmautils fftw-3 py26-nose py26-matplotlib libpng py26-configobj py26-dateutil py26-tz py26-pyobjc-cocoa py26-pyobjc py26-py2app py26-bdist_mpkg py26-macholib py26-modulegraph py26-altgraph py26-pynifti nifticlib cmake swig-python bison m4 gsed python_select swig py26-pywavelets py26-cython py26-scipy SuiteSparse metis shogun glpk hdf5-18 szip Error: Status 1 encountered during processing. To report a bug, see bash-3.2$ textedit bash: textedit: command not found bash-3.2$ sudo port install gcc44 Password: Sorry, try again. Password: ---> Computing dependencies for gcc44 ---> Building gcc44 Error: Target org.macports.build returned: shell command failed Log for gcc44 is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_lang_gcc44/main.log Error: Status 1 encountered during processing. To report a bug, see bash-3.2$ sudo port clean gcc44 ---> Cleaning gcc44 bash-3.2$ sudo port selfupdate ---> Updating the ports tree ---> Updating MacPorts base sources using rsync MacPorts base version 1.9.1 installed, MacPorts base version 1.9.1 downloaded. ---> MacPorts base is already the latest version The ports tree has been updated. To upgrade your installed ports, you should run port upgrade outdated bash-3.2$ port upgrade outdated Error: No ports matched the given expression bash-3.2$ sudo port install gcc44 ---> Computing dependencies for gcc44 ---> Fetching gcc44 ---> Verifying checksum(s) for gcc44 ---> Extracting gcc44 ---> Configuring gcc44 ---> Building gcc44 ---> Staging gcc44 into destroot ---> Installing gcc44 @4.4.4_2 ---> Activating gcc44 @4.4.4_2 ---> Cleaning gcc44 bash-3.2$ sudo port install py26-pymvpa Password: ---> Computing dependencies for py26-pymvpa ---> Dependencies to be installed: py26-hcluster py26-numpy atlas gzip texinfo lzmautils fftw-3 py26-nose py26-matplotlib libpng py26-configobj py26-dateutil py26-tz py26-pyobjc-cocoa py26-pyobjc py26-py2app py26-bdist_mpkg py26-macholib py26-modulegraph py26-altgraph py26-pynifti nifticlib cmake swig-python bison m4 gsed python_select swig py26-pywavelets py26-cython py26-scipy SuiteSparse metis shogun glpk hdf5-18 szip ---> Fetching lzmautils ---> Attempting to fetch lzma-4.32.7.tar.gz from http://distfiles.macports.org/lzmautils ---> Verifying checksum(s) for lzmautils ---> Extracting lzmautils ---> Configuring lzmautils ---> Building lzmautils ---> Staging lzmautils into destroot ---> Installing lzmautils @4.32.7_1 ---> Activating lzmautils @4.32.7_1 ---> Cleaning lzmautils ---> Fetching texinfo ---> Attempting to fetch texinfo-4.13.tar.lzma from http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/texinfo ---> Verifying checksum(s) for texinfo ---> Extracting texinfo ---> Configuring texinfo ---> Building texinfo ---> Staging texinfo into destroot ---> Installing texinfo @4.13_2 ---> Activating texinfo @4.13_2 ---> Cleaning texinfo ---> Fetching gzip ---> Attempting to fetch gzip-1.4.tar.gz from http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/gzip ---> Verifying checksum(s) for gzip ---> Extracting gzip ---> Applying patches to gzip ---> Configuring gzip ---> Building gzip ---> Staging gzip into destroot ---> Installing gzip @1.4_0 ---> Activating gzip @1.4_0 ---> Cleaning gzip ---> Fetching atlas ---> Attempting to fetch atlas3.8.3.tar.bz2 from http://voxel.dl.sourceforge.net/math-atlas ---> Attempting to fetch lapack.tgz from http://distfiles.macports.org/atlas/3.8.3_4 ---> Verifying checksum(s) for atlas ---> Extracting atlas ---> Applying patches to atlas ---> Configuring atlas ---> Building atlas ---> Staging atlas into destroot ---> Installing atlas @3.8.3_4+gcc44 ---> Activating atlas @3.8.3_4+gcc44 ---> Cleaning atlas ---> Fetching fftw-3 ---> Attempting to fetch fftw-3.2.2.tar.gz from ftp://ftp.fftw.org/pub/fftw/ ---> Verifying checksum(s) for fftw-3 ---> Extracting fftw-3 ---> Configuring fftw-3 ---> Building fftw-3 ---> Staging fftw-3 into destroot ---> Installing fftw-3 @3.2.2_0 ---> Activating fftw-3 @3.2.2_0 ---> Cleaning fftw-3 ---> Fetching py26-nose ---> Attempting to fetch nose-0.11.3.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-nose ---> Extracting py26-nose ---> Configuring py26-nose ---> Building py26-nose ---> Staging py26-nose into destroot ---> Installing py26-nose @0.11.3_0 ---> Activating py26-nose @0.11.3_0 ---> Cleaning py26-nose ---> Fetching py26-numpy ---> Attempting to fetch numpy-1.4.1.tar.gz from http://voxel.dl.sourceforge.net/numpy ---> Verifying checksum(s) for py26-numpy ---> Extracting py26-numpy ---> Applying patches to py26-numpy ---> Configuring py26-numpy ---> Building py26-numpy ---> Staging py26-numpy into destroot ---> Installing py26-numpy @1.4.1_1+gcc44 ---> Activating py26-numpy @1.4.1_1+gcc44 ---> Cleaning py26-numpy ---> Fetching py26-hcluster ---> Attempting to fetch hcluster-0.2.0.tar.gz from http://scipy-cluster.googlecode.com/files/ ---> Verifying checksum(s) for py26-hcluster ---> Extracting py26-hcluster ---> Configuring py26-hcluster ---> Building py26-hcluster ---> Staging py26-hcluster into destroot ---> Installing py26-hcluster @0.2.0_0 ---> Activating py26-hcluster @0.2.0_0 ---> Cleaning py26-hcluster ---> Fetching libpng ---> Attempting to fetch libpng-1.2.44.tar.bz2 from http://voxel.dl.sourceforge.net/libpng ---> Verifying checksum(s) for libpng ---> Extracting libpng ---> Configuring libpng ---> Building libpng ---> Staging libpng into destroot ---> Installing libpng @1.2.44_0 ---> Activating libpng @1.2.44_0 ---> Cleaning libpng ---> Fetching py26-configobj ---> Attempting to fetch configobj-4.6.0.zip from http://voxel.dl.sourceforge.net/configobj ---> Verifying checksum(s) for py26-configobj ---> Extracting py26-configobj ---> Configuring py26-configobj ---> Building py26-configobj ---> Staging py26-configobj into destroot ---> Installing py26-configobj @4.6.0_0 ---> Activating py26-configobj @4.6.0_0 ---> Cleaning py26-configobj ---> Fetching py26-tz ---> Attempting to fetch pytz-2010k.tar.bz2 from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-tz ---> Extracting py26-tz ---> Configuring py26-tz ---> Building py26-tz ---> Staging py26-tz into destroot ---> Installing py26-tz @2010k_0 ---> Activating py26-tz @2010k_0 ---> Cleaning py26-tz ---> Fetching py26-dateutil ---> Attempting to fetch python-dateutil-1.5.tar.gz from http://labix.org/download/python-dateutil ---> Verifying checksum(s) for py26-dateutil ---> Extracting py26-dateutil ---> Configuring py26-dateutil ---> Building py26-dateutil ---> Staging py26-dateutil into destroot ---> Installing py26-dateutil @1.5_0 ---> Activating py26-dateutil @1.5_0 ---> Cleaning py26-dateutil ---> Fetching py26-bdist_mpkg ---> Attempting to fetch bdist_mpkg-0.4.4.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-bdist_mpkg ---> Extracting py26-bdist_mpkg ---> Configuring py26-bdist_mpkg ---> Building py26-bdist_mpkg ---> Staging py26-bdist_mpkg into destroot ---> Installing py26-bdist_mpkg @0.4.4_0 ---> Activating py26-bdist_mpkg @0.4.4_0 ---> Cleaning py26-bdist_mpkg ---> Fetching py26-altgraph ---> Attempting to fetch altgraph-0.7.0.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-altgraph ---> Extracting py26-altgraph ---> Configuring py26-altgraph ---> Building py26-altgraph ---> Staging py26-altgraph into destroot ---> Installing py26-altgraph @0.7.0_0 ---> Activating py26-altgraph @0.7.0_0 ---> Cleaning py26-altgraph ---> Fetching py26-modulegraph ---> Attempting to fetch modulegraph-0.8.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-modulegraph ---> Extracting py26-modulegraph ---> Configuring py26-modulegraph ---> Building py26-modulegraph ---> Staging py26-modulegraph into destroot ---> Installing py26-modulegraph @0.8_0 ---> Activating py26-modulegraph @0.8_0 ---> Cleaning py26-modulegraph ---> Fetching py26-macholib ---> Attempting to fetch macholib-1.3.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-macholib ---> Extracting py26-macholib ---> Configuring py26-macholib ---> Building py26-macholib ---> Staging py26-macholib into destroot ---> Installing py26-macholib @1.3_0 ---> Activating py26-macholib @1.3_0 ---> Cleaning py26-macholib ---> Fetching py26-py2app ---> Attempting to fetch py2app-0.5.2.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-py2app ---> Extracting py26-py2app ---> Configuring py26-py2app ---> Building py26-py2app ---> Staging py26-py2app into destroot ---> Installing py26-py2app @0.5.2_0 ---> Activating py26-py2app @0.5.2_0 ---> Cleaning py26-py2app ---> Fetching py26-pyobjc ---> Attempting to fetch pyobjc-core-2.3.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-pyobjc ---> Extracting py26-pyobjc ---> Configuring py26-pyobjc ---> Building py26-pyobjc ---> Staging py26-pyobjc into destroot ---> Installing py26-pyobjc @2.3_0 ---> Activating py26-pyobjc @2.3_0 ---> Cleaning py26-pyobjc ---> Fetching py26-pyobjc-cocoa ---> Attempting to fetch pyobjc-framework-Cocoa-2.3.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-pyobjc-cocoa ---> Extracting py26-pyobjc-cocoa ---> Configuring py26-pyobjc-cocoa ---> Building py26-pyobjc-cocoa ---> Staging py26-pyobjc-cocoa into destroot ---> Installing py26-pyobjc-cocoa @2.3_0 ---> Activating py26-pyobjc-cocoa @2.3_0 ---> Cleaning py26-pyobjc-cocoa ---> Fetching py26-matplotlib ---> Attempting to fetch matplotlib-1.0.0.tar.gz from http://voxel.dl.sourceforge.net/matplotlib ---> Verifying checksum(s) for py26-matplotlib ---> Extracting py26-matplotlib ---> Applying patches to py26-matplotlib ---> Configuring py26-matplotlib ---> Building py26-matplotlib ---> Staging py26-matplotlib into destroot ---> Installing py26-matplotlib @1.0.0_0+tkinter ---> Activating py26-matplotlib @1.0.0_0+tkinter The default backend is now the non-interactive Agg backend, different backends can be specified using the ~/.matplotlib/matplotlibrc file. More details, regarding backends, can be found in the matplotlib FAQ: http://matplotlib.sourceforge.net/faq/installing_faq.html#what-is-a-backend ---> Cleaning py26-matplotlib ---> Fetching cmake ---> Attempting to fetch cmake-2.8.2.tar.gz from http://www.cmake.org/files/v2.8/ ---> Verifying checksum(s) for cmake ---> Extracting cmake ---> Applying patches to cmake ---> Configuring cmake ---> Building cmake ---> Staging cmake into destroot ---> Installing cmake @2.8.2_1 ---> Activating cmake @2.8.2_1 ---> Cleaning cmake ---> Fetching nifticlib ---> Attempting to fetch nifticlib-1.1.0.tar.gz from http://voxel.dl.sourceforge.net/niftilib ---> Verifying checksum(s) for nifticlib ---> Extracting nifticlib ---> Configuring nifticlib ---> Building nifticlib ---> Staging nifticlib into destroot ---> Installing nifticlib @1.1.0_1 ---> Activating nifticlib @1.1.0_1 ---> Cleaning nifticlib ---> Fetching m4 ---> Attempting to fetch m4-1.4.14.tar.bz2 from http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/m4 ---> Verifying checksum(s) for m4 ---> Extracting m4 ---> Configuring m4 ---> Building m4 ---> Staging m4 into destroot ---> Installing m4 @1.4.14_0 ---> Activating m4 @1.4.14_0 ---> Cleaning m4 ---> Fetching bison ---> Attempting to fetch bison-2.4.2.tar.bz2 from http://distfiles.macports.org/bison ---> Verifying checksum(s) for bison ---> Extracting bison ---> Configuring bison ---> Building bison ---> Staging bison into destroot ---> Installing bison @2.4.2_0 ---> Activating bison @2.4.2_0 ---> Cleaning bison ---> Fetching gsed ---> Attempting to fetch sed-4.2.1.tar.gz from http://distfiles.macports.org/gsed ---> Verifying checksum(s) for gsed ---> Extracting gsed ---> Configuring gsed ---> Building gsed ---> Staging gsed into destroot ---> Installing gsed @4.2.1_0 ---> Activating gsed @4.2.1_0 ---> Cleaning gsed ---> Fetching python_select ---> Verifying checksum(s) for python_select ---> Extracting python_select ---> Configuring python_select ---> Building python_select ---> Staging python_select into destroot ---> Installing python_select @0.3_0 ---> Activating python_select @0.3_0 ---> Cleaning python_select ---> Fetching swig ---> Attempting to fetch swig-2.0.0.tar.gz from http://voxel.dl.sourceforge.net/swig ---> Verifying checksum(s) for swig ---> Extracting swig ---> Configuring swig ---> Building swig ---> Staging swig into destroot ---> Installing swig @2.0.0_0 ---> Activating swig @2.0.0_0 ---> Cleaning swig ---> Fetching swig-python ---> Verifying checksum(s) for swig-python ---> Extracting swig-python ---> Configuring swig-python ---> Building swig-python ---> Staging swig-python into destroot ---> Installing swig-python @2.0.0_0 ---> Activating swig-python @2.0.0_0 ---> Cleaning swig-python ---> Fetching py26-pynifti ---> Attempting to fetch pynifti_0.20090303.1.tar.gz from http://voxel.dl.sourceforge.net/niftilib ---> Verifying checksum(s) for py26-pynifti ---> Extracting py26-pynifti ---> Applying patches to py26-pynifti ---> Configuring py26-pynifti ---> Building py26-pynifti ---> Staging py26-pynifti into destroot ---> Installing py26-pynifti @0.20090303.1_0+gcc44 ---> Activating py26-pynifti @0.20090303.1_0+gcc44 ---> Cleaning py26-pynifti ---> Fetching py26-cython ---> Attempting to fetch Cython-0.12.1.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-cython ---> Extracting py26-cython ---> Configuring py26-cython ---> Building py26-cython ---> Staging py26-cython into destroot ---> Installing py26-cython @0.12.1_0 ---> Activating py26-cython @0.12.1_0 ---> Cleaning py26-cython ---> Fetching py26-pywavelets ---> Attempting to fetch PyWavelets-0.2.0.tar.gz from http://distfiles.macports.org/python ---> Verifying checksum(s) for py26-pywavelets ---> Extracting py26-pywavelets ---> Configuring py26-pywavelets ---> Building py26-pywavelets ---> Staging py26-pywavelets into destroot ---> Installing py26-pywavelets @0.2.0_0 ---> Activating py26-pywavelets @0.2.0_0 ---> Cleaning py26-pywavelets ---> Fetching metis ---> Attempting to fetch metis-4.0.tar.gz from ftp://ftp5.freebsd.org/pub/FreeBSD/ports/distfiles/ ---> Verifying checksum(s) for metis ---> Extracting metis ---> Applying patches to metis ---> Configuring metis ---> Building metis ---> Staging metis into destroot ---> Installing metis @4.0.1_0 ---> Activating metis @4.0.1_0 ---> Cleaning metis ---> Fetching SuiteSparse ---> Attempting to fetch SuiteSparse-3.4.0.tar.gz from http://www.cise.ufl.edu/research/sparse/SuiteSparse/ ---> Verifying checksum(s) for SuiteSparse ---> Extracting SuiteSparse ---> Configuring SuiteSparse ---> Building SuiteSparse ---> Staging SuiteSparse into destroot ---> Installing SuiteSparse @3.4.0_0 ---> Activating SuiteSparse @3.4.0_0 ---> Cleaning SuiteSparse ---> Fetching py26-scipy ---> Attempting to fetch scipy-0.8.0.tar.gz from http://voxel.dl.sourceforge.net/scipy ---> Verifying checksum(s) for py26-scipy ---> Extracting py26-scipy ---> Configuring py26-scipy ---> Building py26-scipy ---> Staging py26-scipy into destroot ---> Installing py26-scipy @0.8.0_0+gcc44 ---> Activating py26-scipy @0.8.0_0+gcc44 ---> Cleaning py26-scipy ---> Fetching glpk ---> Attempting to fetch glpk-4.41.tar.gz from http://mirrors.ibiblio.org/pub/mirrors/gnu/ftp/gnu/glpk ---> Verifying checksum(s) for glpk ---> Extracting glpk ---> Configuring glpk ---> Building glpk ---> Staging glpk into destroot ---> Installing glpk @4.41_0 ---> Activating glpk @4.41_0 ---> Cleaning glpk ---> Fetching szip ---> Attempting to fetch szip-2.1.tar.gz from ftp://ftp.hdfgroup.org/lib-external/szip/2.1/src/ ---> Verifying checksum(s) for szip ---> Extracting szip ---> Configuring szip ---> Building szip ---> Staging szip into destroot ---> Installing szip @2.1_1 ---> Activating szip @2.1_1 ---> Cleaning szip ---> Fetching hdf5-18 ---> Attempting to fetch hdf5-1.8.5.tar.bz2 from ftp://ftp.hdfgroup.org/HDF5/current/src/ ---> Verifying checksum(s) for hdf5-18 ---> Extracting hdf5-18 ---> Applying patches to hdf5-18 ---> Configuring hdf5-18 ---> Building hdf5-18 ---> Staging hdf5-18 into destroot ---> Installing hdf5-18 @1.8.5_0 ---> Activating hdf5-18 @1.8.5_0 ---> Cleaning hdf5-18 ---> Fetching shogun ---> Attempting to fetch shogun-0.9.3.tar.bz2 from http://distfiles.macports.org/shogun ---> Verifying checksum(s) for shogun ---> Extracting shogun ---> Applying patches to shogun ---> Configuring shogun ---> Building shogun ---> Staging shogun into destroot ---> Installing shogun @0.9.3_0+gcc44 ---> Activating shogun @0.9.3_0+gcc44 ---> Cleaning shogun ---> Fetching py26-pymvpa ---> Verifying checksum(s) for py26-pymvpa ---> Extracting py26-pymvpa ---> Applying patches to py26-pymvpa ---> Configuring py26-pymvpa ---> Building py26-pymvpa Error: Target org.macports.build returned: shell command failed Log for py26-pymvpa is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-pymvpa/main.log Error: Status 1 encountered during processing. To report a bug, see bash-3.2$ sudo port clean py26-pymvpa Password: ---> Cleaning py26-pymvpa bash-3.2$ sudo port install py26-pymvpa ---> Computing dependencies for py26-pymvpa ---> Fetching py26-pymvpa ---> Verifying checksum(s) for py26-pymvpa ---> Extracting py26-pymvpa ---> Applying patches to py26-pymvpa ---> Configuring py26-pymvpa ---> Building py26-pymvpa Error: Target org.macports.build returned: shell command failed Log for py26-pymvpa is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-pymvpa/main.log Error: Status 1 encountered during processing. To report a bug, see bash-3.2$