mike:~ michaelshaw$ sudo port upgrade atlas
--->  Fetching archive for atlas
--->  Attempting to fetch atlas-3.9.75_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/atlas
--->  Attempting to fetch atlas-3.9.75_0.darwin_10.x86_64.tbz2.rmd160 from http://packages.macports.org/atlas
--->  Installing atlas @3.9.75_0
--->  Cleaning atlas
--->  Deactivating atlas @3.9.47_0+gcc44
--->  Cleaning atlas
--->  Activating atlas @3.9.75_0
--->  Cleaning atlas
--->  Updating database of binaries: 100.0%
--->  Scanning binaries for linking errors: 100.0%
--->  Found 60 broken file(s), matching files to ports
--->  Found 14 broken port(s), determining rebuild order
--->  Rebuilding in order
     poppler @0.18.4 
     atlas @3.9.75 
     py25-numpy @1.6.1 +atlas+gcc44
     py25-pygtksourceview @2.6.0 
     py26-numpy @1.6.1 +atlas+gcc44
     py26-pygtksourceview @2.10.1 
     py27-numpy @1.6.1 +atlas+gcc44
     agave @0.4.7 
     ffmpeg @0.7.11 
     gimp2 @2.6.12 +help_browser+python27
     gimp-jp2 @2.2.0 
     strigi @0.7.5 
     kdelibs4 @4.7.2 
     kde4-runtime @4.7.2 
--->  Computing dependencies for poppler
--->  Dependencies to be installed: openjpeg
Portfile changed since last build; discarding previous state.
--->  Fetching archive for openjpeg
--->  Attempting to fetch openjpeg-1.5.0_1.darwin_10.x86_64.tbz2 from http://packages.macports.org/openjpeg
--->  Attempting to fetch openjpeg-1.5.0_1.darwin_10.x86_64.tbz2.rmd160 from http://packages.macports.org/openjpeg
--->  Installing openjpeg @1.5.0_1
--->  Activating openjpeg @1.5.0_1
--->  Cleaning openjpeg
--->  Cleaning poppler
--->  Cleaning atlas
--->  Computing dependencies for py25-numpy
--->  Cleaning py25-numpy
--->  Computing dependencies for py25-pygtksourceview
--->  Cleaning py25-pygtksourceview
--->  Computing dependencies for py26-numpy
--->  Cleaning py26-numpy
--->  Computing dependencies for py26-pygtksourceview
--->  Cleaning py26-pygtksourceview
--->  Computing dependencies for py27-numpy
--->  Cleaning py27-numpy
--->  Computing dependencies for agave
--->  Cleaning agave
--->  Computing dependencies for ffmpeg
--->  Fetching archive for ffmpeg
--->  Attempting to fetch ffmpeg-0.7.11_1+mmx.darwin_10.x86_64.tbz2 from http://packages.macports.org/ffmpeg
--->  Fetching distfiles for ffmpeg
--->  Attempting to fetch ffmpeg-0.7.11.tar.bz2 from http://distfiles.macports.org/ffmpeg
--->  Verifying checksum(s) for ffmpeg
--->  Extracting ffmpeg
--->  Applying patches to ffmpeg
--->  Configuring ffmpeg
--->  Building ffmpeg
--->  Staging ffmpeg into destroot
--->  Installing ffmpeg @0.7.11_1+mmx
--->  Cleaning ffmpeg
--->  Computing dependencies for ffmpeg
--->  Deactivating ffmpeg @0.7.11_1
--->  Cleaning ffmpeg
--->  Activating ffmpeg @0.7.11_1+mmx

*******
******* This build of ffmpeg includes GPLed code and
******* is therefore licensed under GPL v2 or later.
*******
******* The following modules are GPLed:
*******
*******      postproc
*******      libx264
*******      libxvid
*******
******* To include all nonfree, GPLed and LGPL code use variant +nonfree
******* To remove nonfree and GPLed code leaving only LGPL code use variant +no_gpl
*******

--->  Cleaning ffmpeg
--->  Computing dependencies for gimp2
--->  Cleaning gimp2
--->  Computing dependencies for gimp-jp2
--->  Cleaning gimp-jp2
--->  Computing dependencies for strigi
--->  Cleaning strigi
--->  Computing dependencies for kdelibs4
--->  Fetching archive for kdelibs4
--->  Attempting to fetch kdelibs4-4.8.3_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/kdelibs4
--->  Fetching distfiles for kdelibs4
--->  Attempting to fetch kdelibs-4.8.3.tar.xz from http://mirror.facebook.net/kde/stable/4.8.3/src/
--->  Verifying checksum(s) for kdelibs4
--->  Extracting kdelibs4
--->  Applying patches to kdelibs4
--->  Configuring kdelibs4
--->  Building kdelibs4
--->  Staging kdelibs4 into destroot
--->  Installing kdelibs4 @4.8.3_0
--->  Cleaning kdelibs4
--->  Computing dependencies for kdelibs4
--->  Deactivating kde4-runtime @4.7.2_0
--->  Deactivating kdelibs4 @4.7.2_0
--->  Cleaning kdelibs4
--->  Activating kdelibs4 @4.8.3_0
##########################################################
# Don't forget that dbus needs to be started as the local 
# user (not with sudo) before any KDE programs will launch
# To start it run the following command:                  
# launchctl load -w /Library/LaunchAgents/org.freedesktop.dbus-session.plist
##########################################################
--->  Cleaning kdelibs4
--->  Computing dependencies for kde4-runtime
--->  Fetching archive for kde4-runtime
--->  Attempting to fetch kde4-runtime-4.8.3_0.darwin_10.x86_64.tbz2 from http://packages.macports.org/kde4-runtime
--->  Fetching distfiles for kde4-runtime
--->  Attempting to fetch kde-runtime-4.8.3.tar.xz from http://mirror.facebook.net/kde/stable/4.8.3/src/
--->  Verifying checksum(s) for kde4-runtime
--->  Extracting kde4-runtime
--->  Applying patches to kde4-runtime
--->  Configuring kde4-runtime
--->  Building kde4-runtime
--->  Staging kde4-runtime into destroot
--->  Installing kde4-runtime @4.8.3_0
--->  Cleaning kde4-runtime
--->  Computing dependencies for kde4-runtime
--->  Activating kde4-runtime @4.8.3_0
##########################################################
# Don't forget that dbus needs to be started as the local 
# user (not with sudo) before any KDE programs will launch
# To start it run the following command:                  
# launchctl load -w /Library/LaunchAgents/org.freedesktop.dbus-session.plist
##########################################################
--->  Cleaning kde4-runtime
--->  Updating database of binaries: 100.0%
--->  Scanning binaries for linking errors: 100.0%
--->  Found 29 broken file(s), matching files to ports
--->  Found 9 broken port(s), determining rebuild order
--->  Rebuilding in order
     gimp2 @2.6.12 +help_browser+python27
     strigi @0.7.5 
     atlas @3.9.75 
     py25-numpy @1.6.1 +atlas+gcc44
     py25-pygtksourceview @2.6.0 
     py26-numpy @1.6.1 +atlas+gcc44
     py26-pygtksourceview @2.10.1 
     py27-numpy @1.6.1 +atlas+gcc44
     agave @0.4.7 
--->  Computing dependencies for gimp2
--->  Cleaning gimp2
--->  Unable to uninstall gimp2 @2.6.12_0+help_browser+python27, the following ports depend on it:
--->  	gimp-app @2.6.0_1
--->  	gimp-app @2.6.0_2
--->  	gimp-app @2.6.11_0
--->  	gimp-app @2.6.11_1
--->  	gimp-app @2.6.12_0
--->  	gimp-jp2 @2.2.0_3
--->  	gimp-jp2 @2.2.0_4
--->  	gimp-lqr-plugin @0.7.1_0
--->  	gimp-lqr-plugin @0.7.1_1
--->  	gutenprint @5.2.3_2
--->  	gutenprint @5.2.3_3
--->  	gutenprint @5.2.7_0
--->  	icns-gimp @0.1_0
--->  	icns-gimp @0.1_1
--->  	ufraw @0.17_0
--->  	ufraw @0.17_1
--->  	ufraw @0.17_2
--->  	ufraw @0.18_0
--->  	ufraw @0.18_1
--->  	xsane @0.996_3
--->  	xsane @0.996_4
--->  	xsane @0.998_0
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating gimp2 @2.6.12_0+help_browser+python27
--->  Unable to deactivate gimp2 @2.6.12_0+help_browser+python27, the following ports depend on it:
--->  	gimp-app @2.6.12_0
--->  	gimp-jp2 @2.2.0_4
--->  	gimp-lqr-plugin @0.7.1_1
--->  	gutenprint @5.2.7_0
--->  	icns-gimp @0.1_1
--->  	ufraw @0.18_1
--->  	xsane @0.998_0
Warning: Deactivate forced.  Proceeding despite dependencies.
--->  Cleaning gimp2
--->  Uninstalling gimp2 @2.6.12_0+help_browser+python27
--->  Cleaning gimp2
--->  Computing dependencies for gimp2
--->  Fetching distfiles for gimp2
--->  Attempting to fetch gimp-2.6.12.tar.bz2 from http://distfiles.macports.org/gimp2
--->  Verifying checksum(s) for gimp2
--->  Extracting gimp2
--->  Applying patches to gimp2
--->  Configuring gimp2
--->  Building gimp2
--->  Staging gimp2 into destroot
--->  Installing gimp2 @2.6.12_0+help_browser+python27
--->  Activating gimp2 @2.6.12_0+help_browser+python27
--->  Cleaning gimp2
--->  Computing dependencies for strigi
--->  Cleaning strigi
--->  Unable to uninstall strigi @0.7.5_1, the following ports depend on it:
--->  	kdelibs4 @4.4.5_2
--->  	kdelibs4 @4.6.1_0
--->  	kdelibs4 @4.6.4_0
--->  	kdelibs4 @4.6.5_0
--->  	kdelibs4 @4.6.5_2
--->  	kdelibs4 @4.7.0_0
--->  	kdelibs4 @4.7.0_1
--->  	kdelibs4 @4.7.1_0
--->  	kdelibs4 @4.7.1_1
--->  	kdelibs4 @4.7.2_0
--->  	kdelibs4 @4.8.3_0
--->  	soprano @2.4.4_0
--->  	soprano @2.5.2_0
--->  	soprano @2.5.63_0
--->  	soprano @2.6.0_0
--->  	soprano @2.6.51_0
--->  	soprano @2.6.51_1
--->  	soprano @2.6.52_1
--->  	soprano @2.6.52_2
--->  	soprano @2.7.0_0
--->  	soprano @2.7.4_0
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating strigi @0.7.5_1
--->  Unable to deactivate strigi @0.7.5_1, the following ports depend on it:
--->  	kdelibs4 @4.8.3_0
--->  	soprano @2.7.4_0
Warning: Deactivate forced.  Proceeding despite dependencies.
--->  Cleaning strigi
--->  Uninstalling strigi @0.7.5_1
--->  Cleaning strigi
--->  Computing dependencies for strigi
--->  Fetching distfiles for strigi
--->  Verifying checksum(s) for strigi
--->  Extracting strigi
--->  Applying patches to strigi
--->  Configuring strigi
--->  Building strigi
--->  Staging strigi into destroot
--->  Installing strigi @0.7.5_1
--->  Activating strigi @0.7.5_1
##########################################################
# Don't forget that dbus needs to be started as the local 
# user (not with sudo) before any KDE programs will launch
# To start it run the following command:                  
# launchctl load -w /Library/LaunchAgents/org.freedesktop.dbus-session.plist
##########################################################
--->  Cleaning strigi
--->  Cleaning atlas
--->  Unable to uninstall atlas @3.9.75_0, the following ports depend on it:
--->  	py25-numpy @1.4.1_1+gcc44
--->  	py25-numpy @1.5.0_1+atlas+gcc44
--->  	py25-numpy @1.5.1_1+atlas+gcc44
--->  	py25-numpy @1.6.0_0+atlas+gcc44
--->  	py25-numpy @1.6.1_0+atlas+gcc44
--->  	py25-numpy @1.6.1_1+atlas+gcc44
--->  	py26-numpy @1.6.1_1+atlas+gcc44
--->  	py26-numpy @1.4.1_1+gcc44
--->  	py26-numpy @1.5.0_1+atlas+gcc44
--->  	py26-numpy @1.5.1_0+atlas+gcc44
--->  	py26-numpy @1.5.1_1+atlas+gcc44
--->  	py26-numpy @1.6.0_0+atlas+gcc44
--->  	py26-numpy @1.6.1_0+atlas+gcc44
--->  	py27-numpy @1.6.0_0+atlas+gcc44
--->  	py27-numpy @1.6.1_0+atlas+gcc44
--->  	py27-numpy @1.6.1_1+atlas+gcc44
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating atlas @3.9.75_0
--->  Unable to deactivate atlas @3.9.75_0, the following ports depend on it:
--->  	py25-numpy @1.6.1_1+atlas+gcc44
--->  	py26-numpy @1.6.1_1+atlas+gcc44
--->  	py27-numpy @1.6.1_1+atlas+gcc44
Warning: Deactivate forced.  Proceeding despite dependencies.
--->  Cleaning atlas
--->  Uninstalling atlas @3.9.75_0
--->  Cleaning atlas
--->  Computing dependencies for atlas
--->  Dependencies to be installed: gcc46 cloog isl libmpc ppl glpk
--->  Fetching distfiles for isl
--->  Attempting to fetch isl-0.07.tar.bz2 from http://distfiles.macports.org/isl
--->  Verifying checksum(s) for isl
--->  Extracting isl
--->  Applying patches to isl
--->  Configuring isl
--->  Building isl
--->  Staging isl into destroot
--->  Installing isl @0.07_0
--->  Activating isl @0.07_0
--->  Cleaning isl
--->  Fetching distfiles for cloog
--->  Attempting to fetch cloog-0.16.3.tar.gz from http://distfiles.macports.org/cloog
--->  Verifying checksum(s) for cloog
--->  Extracting cloog
--->  Applying patches to cloog
--->  Configuring cloog
--->  Building cloog
--->  Staging cloog into destroot
--->  Installing cloog @0.16.3_0
--->  Activating cloog @0.16.3_0
--->  Cleaning cloog
--->  Fetching distfiles for libmpc
--->  Attempting to fetch mpc-0.9.tar.gz from http://distfiles.macports.org/libmpc
--->  Verifying checksum(s) for libmpc
--->  Extracting libmpc
--->  Configuring libmpc
--->  Building libmpc
--->  Staging libmpc into destroot
--->  Installing libmpc @0.9_0
--->  Activating libmpc @0.9_0
--->  Cleaning libmpc
--->  Fetching distfiles for glpk
--->  Attempting to fetch glpk-4.47.tar.gz from http://mirror.facebook.net/gnu/gnu/glpk
--->  Attempting to fetch glpk-4.47.tar.gz from http://distfiles.macports.org/glpk
--->  Verifying checksum(s) for glpk
--->  Extracting glpk
--->  Configuring glpk
--->  Building glpk
--->  Staging glpk into destroot
--->  Installing glpk @4.47_0
--->  Activating glpk @4.47_0
--->  Cleaning glpk
--->  Fetching distfiles for ppl
--->  Attempting to fetch ppl-0.12.1.tar.bz2 from http://distfiles.macports.org/ppl
--->  Verifying checksum(s) for ppl
--->  Extracting ppl
--->  Configuring ppl
--->  Building ppl
--->  Staging ppl into destroot
--->  Installing ppl @0.12.1_2
--->  Activating ppl @0.12.1_2
--->  Cleaning ppl
--->  Fetching distfiles for gcc46
--->  Attempting to fetch gcc-4.6.3.tar.bz2 from http://mirror.facebook.net/gnu/gnu/gcc/gcc-4.6.3
--->  Attempting to fetch gcc-4.6.3.tar.bz2 from http://distfiles.macports.org/gcc46
--->  Attempting to fetch ecj-4.5.jar from http://distfiles.macports.org/gcc46
--->  Verifying checksum(s) for gcc46
--->  Extracting gcc46
--->  Configuring gcc46
--->  Building gcc46
--->  Staging gcc46 into destroot
--->  Installing gcc46 @4.6.3_2
--->  Activating gcc46 @4.6.3_2
--->  Cleaning gcc46
--->  Fetching distfiles for atlas
--->  Attempting to fetch atlas3.9.75.tar.bz2 from http://distfiles.macports.org/atlas
--->  Attempting to fetch lapack-3.4.0.tgz from http://distfiles.macports.org/atlas
--->  Verifying checksum(s) for atlas
--->  Extracting atlas
--->  Applying patches to atlas
--->  Configuring atlas
--->  Building atlas
--->  Staging atlas into destroot
--->  Installing atlas @3.9.75_0
--->  Activating atlas @3.9.75_0
--->  Cleaning atlas
--->  Computing dependencies for py25-numpy
--->  Cleaning py25-numpy
--->  Unable to uninstall py25-numpy @1.6.1_1+atlas+gcc44, the following ports depend on it:
--->  	py25-cairo @1.8.2_0
--->  	py25-cairo @1.8.2_1
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating py25-numpy @1.6.1_1+atlas+gcc44
--->  Unable to deactivate py25-numpy @1.6.1_1+atlas+gcc44, the following ports depend on it:
--->  	py25-cairo @1.8.2_1
Warning: Deactivate forced.  Proceeding despite dependencies.
--->  Cleaning py25-numpy
--->  Uninstalling py25-numpy @1.6.1_1+atlas+gcc44
--->  Cleaning py25-numpy
--->  Computing dependencies for py25-numpy
--->  Fetching distfiles for py25-numpy
--->  Verifying checksum(s) for py25-numpy
--->  Extracting py25-numpy
--->  Applying patches to py25-numpy
--->  Configuring py25-numpy
--->  Building py25-numpy
--->  Staging py25-numpy into destroot
--->  Installing py25-numpy @1.6.1_1+atlas+gcc44
--->  Activating py25-numpy @1.6.1_1+atlas+gcc44
--->  Cleaning py25-numpy
--->  Computing dependencies for py25-pygtksourceview
--->  Cleaning py25-pygtksourceview
--->  Unable to uninstall py25-pygtksourceview @2.6.0_0, the following ports depend on it:
--->  	gedit @2.26.3_0
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating py25-pygtksourceview @2.6.0_0
--->  Cleaning py25-pygtksourceview
--->  Uninstalling py25-pygtksourceview @2.6.0_0
--->  Cleaning py25-pygtksourceview
--->  Computing dependencies for py25-pygtksourceview
--->  Fetching distfiles for py25-pygtksourceview
--->  Verifying checksum(s) for py25-pygtksourceview
--->  Extracting py25-pygtksourceview
--->  Configuring py25-pygtksourceview
--->  Building py25-pygtksourceview
--->  Staging py25-pygtksourceview into destroot
--->  Installing py25-pygtksourceview @2.6.0_0
--->  Activating py25-pygtksourceview @2.6.0_0
--->  Cleaning py25-pygtksourceview
--->  Computing dependencies for py26-numpy
--->  Cleaning py26-numpy
--->  Computing dependencies for py26-pygtksourceview
--->  Cleaning py26-pygtksourceview
--->  Unable to uninstall py26-pygtksourceview @2.10.1_0, the following ports depend on it:
--->  	gedit @2.30.4_0
--->  	gedit @2.30.4_2
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating py26-pygtksourceview @2.10.1_0
--->  Cleaning py26-pygtksourceview
--->  Uninstalling py26-pygtksourceview @2.10.1_0
--->  Cleaning py26-pygtksourceview
--->  Computing dependencies for py26-pygtksourceview
--->  Fetching distfiles for py26-pygtksourceview
--->  Verifying checksum(s) for py26-pygtksourceview
--->  Extracting py26-pygtksourceview
--->  Configuring py26-pygtksourceview
--->  Building py26-pygtksourceview
--->  Staging py26-pygtksourceview into destroot
--->  Installing py26-pygtksourceview @2.10.1_0
--->  Activating py26-pygtksourceview @2.10.1_0
--->  Cleaning py26-pygtksourceview
--->  Computing dependencies for py27-numpy
--->  Cleaning py27-numpy
--->  Deactivating py27-numpy @1.6.1_1+atlas+gcc44
--->  Cleaning py27-numpy
--->  Uninstalling py27-numpy @1.6.1_1+atlas+gcc44
--->  Cleaning py27-numpy
--->  Computing dependencies for py27-numpy
--->  Fetching distfiles for py27-numpy
--->  Verifying checksum(s) for py27-numpy
--->  Extracting py27-numpy
--->  Applying patches to py27-numpy
--->  Configuring py27-numpy
--->  Building py27-numpy
--->  Staging py27-numpy into destroot
--->  Installing py27-numpy @1.6.1_1+atlas+gcc44
--->  Activating py27-numpy @1.6.1_1+atlas+gcc44
--->  Cleaning py27-numpy
--->  Computing dependencies for agave
--->  Cleaning agave
--->  Deactivating agave @0.4.7_0
--->  Cleaning agave
--->  Uninstalling agave @0.4.7_0
--->  Cleaning agave
--->  Computing dependencies for agave
--->  Fetching distfiles for agave
--->  Verifying checksum(s) for agave
--->  Extracting agave
--->  Applying patches to agave
--->  Configuring agave
--->  Building agave
--->  Staging agave into destroot
--->  Installing agave @0.4.7_0
--->  Activating agave @0.4.7_0
--->  Cleaning agave
--->  Updating database of binaries: 100.0%
--->  Scanning binaries for linking errors: 100.0%
--->  Found 7 broken file(s), matching files to ports
--->  Found 1 broken port(s), determining rebuild order
--->  Rebuilding in order
     py26-numpy @1.6.1 +atlas+gcc44
--->  Computing dependencies for py26-numpy
--->  Cleaning py26-numpy
--->  Scanning binaries for linking errors: 100.0%
--->  Found 7 broken file(s), matching files to ports
Error: Port py26-numpy is still broken after rebuiling it more than 3 times.
Error: Please run port -d -y rev-upgrade and use the output to report a bug.
Port py26-numpy still broken after rebuilding 3 time(s)
    while executing
"error "Port $portname still broken after rebuilding [expr $broken_port_counts($portname) - 1] time(s)""
    (procedure "revupgrade_scanandrebuild" line 256)
    invoked from within
"revupgrade_scanandrebuild broken_port_counts $opts"
    (procedure "macports::revupgrade" line 5)
    invoked from within
"macports::revupgrade $opts"
    (procedure "action_revupgrade" line 2)
    invoked from within
"action_revupgrade $action $portlist $opts"
    (procedure "action_upgrade" line 24)
    invoked from within
"$action_proc $action $portlist [array get global_options]"
    (procedure "process_cmd" line 95)
    invoked from within
"process_cmd $remaining_args"
    invoked from within
"if { [llength $remaining_args] > 0 } {

    # If there are remaining arguments, process those as a command
    set exit_status [process_cmd $remaining..."
    (file "/opt/local/bin/port" line 4784)
mike:~ michaelshaw$