# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 # $Id$ PortSystem 1.0 name intrinsic-noise-analyzer version 0.4.1 categories science platforms darwin maintainers gmail.com:hmatuschek description The intrinsic noise analyzer for biochemical reaction networks. long_description iNA is a computational tool for quantitative analysis of fluctuations in \ biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to \ the stochastic nature of chemical reactions and cannot be ignored when some molecules are \ present in very low copy numbers only, as is the case in living cells. The SBML-based software \ computes statistical measures such as means and standard deviations of concentrations within a \ given accuracy. This is carried out automatically using the system size expansion whose leading \ order term is the popular Linear Noise Approximation. The results of the analysis can be tested \ against the computationally much more expensive stochastic simulation algorithm. license GPL-2 homepage http://code.google.com/p/intrinsic-noise-analyzer master_sites http://intrinsic-noise-analyzer.googlecode.com/files/ checksums md5 b45e3e0b2ac26b2dc6d3025f3b34acea \ sha1 359cbb9847b7b0ba6ea9038b97ea70303120818c \ rmd160 a441f30ea8d32e0788e00615e531094e011e2895 depends_lib port:libsbml \ port:qt4-mac \ port:GiNaC \ port:llvm-3.2 depends_build port:cmake configure.cmd cmake configure.pre_args -DCMAKE_INSTALL_PREFIX=${prefix} configure.args -DCMAKE_VERBOSE_MAKEFILE=ON \ -DCMAKE_COLOR_MAKEFILE=OFF \ -DCMAKE_BUILD_TYPE=Release \ -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON \ -DCMAKE_INSTALL_NAME_DIR=${prefix}/lib \ -DCMAKE_SYSTEM_PREFIX_PATH=\"${prefix}\;/usr\" configure.args-append ../ina_src # Phase modifications # Move source into ina_src; configure & build (out-of-source) in ${workpath} post-extract { # Rename extracted directory move ${workpath}/${name}-${version} ${workpath}/ina_src } post-patch { file mkdir ${workpath}/${name}-${version} }