version:1 :debug:main epoch: in tree: 0 installed: 0 :debug:main cmake 3.3.2_1 exists in the ports tree :debug:main cmake 3.3.2_1 is the latest installed :debug:main cmake 3.3.2_1 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cmake :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! cmake 3.3.2_1 >= cmake 3.3.2_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main curl 7.45.0_0 exists in the ports tree :debug:main curl 7.45.0_0 +ssl is the latest installed :debug:main curl 7.45.0_0 +ssl is active :debug:main Merging existing variants '+ssl' into variants :debug:main new fully merged portvariants: ssl + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant ssl provides ssl :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! curl 7.45.0_0 >= curl 7.45.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main zlib 1.2.8_0 exists in the ports tree :debug:main zlib 1.2.8_0 is the latest installed :debug:main zlib 1.2.8_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main openssl 1.0.2d_0 exists in the ports tree :debug:main openssl 1.0.2d_0 is the latest installed :debug:main openssl 1.0.2d_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! openssl 1.0.2d_0 >= openssl 1.0.2d_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main curl-ca-bundle 7.45.0_0 exists in the ports tree :debug:main curl-ca-bundle 7.45.0_0 is the latest installed :debug:main curl-ca-bundle 7.45.0_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! curl-ca-bundle 7.45.0_0 >= curl-ca-bundle 7.45.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main expat 2.1.0_0 exists in the ports tree :debug:main expat 2.1.0_0 is the latest installed :debug:main expat 2.1.0_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main bzip2 1.0.6_0 exists in the ports tree :debug:main bzip2 1.0.6_0 is the latest installed :debug:main bzip2 1.0.6_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2 :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main libarchive 3.1.2_1 exists in the ports tree :debug:main libarchive 3.1.2_1 is the latest installed :debug:main libarchive 3.1.2_1 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/libarchive :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libarchive 3.1.2_1 >= libarchive 3.1.2_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main libxml2 2.9.2_2 exists in the ports tree :debug:main libxml2 2.9.2_2 is the latest installed :debug:main libxml2 2.9.2_2 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2 :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main libiconv 1.14_0 exists in the ports tree :debug:main libiconv 1.14_0 is the latest installed :debug:main libiconv 1.14_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main xz 5.2.2_0 exists in the ports tree :debug:main xz 5.2.2_0 is the latest installed :debug:main xz 5.2.2_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! xz 5.2.2_0 >= xz 5.2.2_0 :debug:main epoch: in tree: 2 installed: 2 :debug:main gettext 0.19.6_0 exists in the ports tree :debug:main gettext 0.19.6_0 is the latest installed :debug:main gettext 0.19.6_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang < 211.10.1} :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gettext 0.19.6_0 >= gettext 0.19.6_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main ncurses 6.0_0 exists in the ports tree :debug:main ncurses 6.0_0 is the latest installed :debug:main ncurses 6.0_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ncurses 6.0_0 >= ncurses 6.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main lzo2 2.09_0 exists in the ports tree :debug:main lzo2 2.09_0 is the latest installed :debug:main lzo2 2.09_0 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/lzo2 :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! lzo2 2.09_0 >= lzo2 2.09_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main maloc 1.5_2 exists in the ports tree :debug:main maloc 1.5_2 is the latest installed :debug:main maloc 1.5_2 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/maloc :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! maloc 1.5_2 >= maloc 1.5_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main readline 6.3.003_1 exists in the ports tree :debug:main readline 6.3.003_1 is the latest installed :debug:main readline 6.3.003_1 is active :debug:main Merging existing variants '' into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/readline :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! readline 6.3.003_1 >= readline 6.3.003_1 :msg:main ---> Computing dependencies for apbs:info:main .:debug:main Searching for dependency: cmake :debug:main Found Dependency: receipt exists for cmake :debug:main Searching for dependency: maloc :debug:main Found Dependency: receipt exists for maloc :debug:main Searching for dependency: readline :debug:main Found Dependency: receipt exists for readline :msg:main :debug:main Executing org.macports.main (apbs) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:fetch fetch phase started at Mon Nov 9 20:54:10 EST 2015 :notice:fetch ---> Fetching distfiles for apbs :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-1 :debug:fetch Executing proc-pre-org.macports.fetch-fetch-2 :debug:fetch Executing org.macports.fetch (apbs) :debug:fetch Privilege de-escalation not attempted as not running as root. :debug:checksum checksum phase started at Mon Nov 9 20:54:10 EST 2015 :notice:checksum ---> Verifying checksums for apbs :debug:checksum Executing org.macports.checksum (apbs) :info:checksum ---> Checksumming apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz :debug:checksum Calculated (rmd160) is 5c4d583e12deb3fbc2b5a8031882311cbfd22c7e :debug:checksum Correct (rmd160) checksum for apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz :debug:checksum Calculated (sha256) is f98ce6a51d8f813e1b4fa626c054ddbf7a985403ca30f890733cb1abf2bd6e05 :debug:checksum Correct (sha256) checksum for apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz :debug:checksum Privilege de-escalation not attempted as not running as root. :debug:extract extract phase started at Mon Nov 9 20:54:12 EST 2015 :notice:extract ---> Extracting apbs :debug:extract Executing org.macports.extract (apbs) :info:extract ---> Extracting apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' :debug:extract Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' :debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' | /usr/bin/tar -xf -' :debug:extract Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' | /usr/bin/tar -xf - :debug:extract euid/egid changed to: 0/0 :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work to macports :debug:extract euid/egid changed to: 502/501 :debug:extract Executing proc-post-org.macports.extract-extract-0 :debug:extract Privilege de-escalation not attempted as not running as root. :debug:patch patch phase started at Mon Nov 9 20:54:16 EST 2015 :debug:patch Executing org.macports.patch (apbs) :debug:patch Privilege de-escalation not attempted as not running as root. :debug:configure configure phase started at Mon Nov 9 20:54:16 EST 2015 :notice:configure ---> Configuring apbs :debug:configure Using compiler 'Xcode Clang' :debug:configure Executing proc-pre-org.macports.configure-configure-0 :debug:configure Executing proc-pre-org.macports.configure-configure-1 :debug:configure Executing proc-pre-org.macports.configure-configure-2 :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: maloc readline cmake :debug:configure Executing org.macports.configure (apbs) :debug:configure Environment: CC='/usr/bin/clang' CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS' CFLAGS='-pipe -Os -arch x86_64' CPATH='/opt/local/include' CPPFLAGS='-I/opt/local/include' CXX='/usr/bin/clang++' CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' F77FLAGS='-m64' F90FLAGS='-pipe -Os -m64' FCFLAGS='-pipe -Os -m64' FFLAGS='-pipe -Os' INSTALL='/usr/bin/install -c' LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' OBJC='/usr/bin/clang' OBJCFLAGS='-pipe -Os -arch x86_64' OBJCXX='/usr/bin/clang++' OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DENABLE_OPENMP:BOOL=OFF -DENABLE_BEM=OFF -DENABLE_MPI:BOOL=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.10" -DCMAKE_OSX_SYSROOT="/" ./apbs' :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DENABLE_OPENMP:BOOL=OFF -DENABLE_BEM=OFF -DENABLE_MPI:BOOL=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.10" -DCMAKE_OSX_SYSROOT="/" ./apbs :info:configure -- The C compiler identification is AppleClang 6.1.0.6020053 :info:configure -- The CXX compiler identification is AppleClang 6.1.0.6020053 :info:configure CMake Warning at /opt/local/share/cmake-3.3/Modules/Platform/Darwin.cmake:197 (message): :info:configure The SDK Library/Frameworks path :info:configure :info:configure //Library/Frameworks :info:configure :info:configure is not set up correctly on this system. This is known to occur when :info:configure installing Xcode 3.2.6: :info:configure :info:configure http://bugs.python.org/issue14018 :info:configure :info:configure The problem may cause build errors that report missing system frameworks. :info:configure Fix your SDK symlinks to resolve this issue and avoid this warning. :info:configure Call Stack (most recent call first): :info:configure /opt/local/share/cmake-3.3/Modules/CMakeSystemSpecificInformation.cmake:36 (include) :info:configure CMakeLists.txt:46 (project) :info:configure :info:configure :info:configure -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang :info:configure -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -- works :info:configure -- Detecting C compiler ABI info :info:configure -- Detecting C compiler ABI info - done :info:configure -- Detecting C compile features :info:configure -- Detecting C compile features - done :info:configure -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ :info:configure -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -- works :info:configure -- Detecting CXX compiler ABI info :info:configure -- Detecting CXX compiler ABI info - done :info:configure -- Detecting CXX compile features :info:configure -- Detecting CXX compile features - done :info:configure -- Setting project paths :info:configure -- Setting lookup paths for headers and libraries :info:configure -- Computing machine epsilon values :info:configure -- Floating point epsilon is 2.220446e-16 :info:configure -- Double precision epsilon is 2.220446e-16 :info:configure -- Looking for time :info:configure -- Looking for time - found :info:configure -- Looking for rand :info:configure -- Looking for rand - found :info:configure -- Looking for srand :info:configure -- Looking for srand - found :info:configure CMake Warning at CMakeLists.txt:232 (message): :info:configure Did not find fetk :info:configure :info:configure :info:configure -- External maloc library was found: /opt/local/lib/libmaloc.dylib :info:configure -- Looking for include file maloc/maloc.h :info:configure -- Looking for include file maloc/maloc.h - found :info:configure -- External maloc headers found :info:configure -- Inline functions enabled :info:configure libs: -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow-lmaloc-lm :info:configure -- Adding apbs_generic :info:configure -- With source files nosh.c;mgparm.c;femparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c :info:configure -- With external header files nosh.h;mgparm.h;femparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h :info:configure -- With internal header files :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm :info:configure -- Added apbs_generic :info:configure -- Adding apbs_pmgc :info:configure -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c :info:configure -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h :info:configure -- With internal header files :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm :info:configure -- Added apbs_pmgc :info:configure -- Adding apbs_mg :info:configure -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c :info:configure -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h :info:configure -- With internal header files :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm;apbs_generic;apbs_pmgc :info:configure -- Added apbs_mg :info:configure -- Adding apbs_geoflow :info:configure -- With source files cpbconcz2.cpp;modules.cpp;pbsolvercz.cpp;solvationsub.cpp;subfunction.cpp;surfconcz.cpp :info:configure -- With external header files cpbconcz2.h :info:configure -- With internal header files :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm :info:configure -- Added apbs_geoflow :info:configure -- :info:configure -- :info:configure -- -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm apbs_generic;apbs_pmgc;apbs_mg;apbs_geoflow :info:configure -- :info:configure -- -std=c99 :info:configure -- Supplemental tools enabled :info:configure -- Building mesh :info:configure -- libraries: apbs_generic;apbs_mg;apbs_pmgc :info:configure -- Building manip :info:configure -- libraries: apbs_generic;apbs_mg;apbs_pmgc :info:configure -- Configuring done :info:configure -- Generating done :info:configure -- Build files have been written to: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 :debug:configure Privilege de-escalation not attempted as not running as root. :debug:build build phase started at Mon Nov 9 20:54:54 EST 2015 :notice:build ---> Building apbs :debug:build Executing org.macports.build (apbs) :debug:build Environment: CC_PRINT_OPTIONS='YES' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS' CPATH='/opt/local/include' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.10' :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON' :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /opt/local/bin/cmake -H/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs -B/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 --check-build-system CMakeFiles/Makefile.cmake 0 :info:build /opt/local/bin/cmake -E cmake_progress_start /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/CMakeFiles /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/CMakeFiles/progress.marks :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/geoflow/CMakeFiles/apbs_geoflow.dir/build.make src/geoflow/CMakeFiles/apbs_geoflow.dir/depend :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/depend.internal". :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/depend.internal". :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". :info:build Scanning dependencies of target apbs_geoflow :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/geoflow/CMakeFiles/apbs_geoflow.dir/build.make src/geoflow/CMakeFiles/apbs_geoflow.dir/build :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build [ 2%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o :info:build [ 2%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o :info:build [ 5%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o :info:build [ 4%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/modules.cpp.o :info:build [ 5%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/cpbconcz2.cpp :info:build [ 6%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/subfunction.cpp :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/solvationsub.cpp :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/surfconcz.cpp :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/pbsolvercz.cpp :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/modules.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.cpp :info:build Scanning dependencies of target apbs_generic :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build [ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/nosh.c :info:build Scanning dependencies of target apbs_pmgc :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/nosh.c:432:9: warning: implicit declaration of function 'BEMparm_copy' is invalid in C99 [-Wimplicit-function-declaration] :info:build BEMparm_copy(thee->bemparm, source->bemparm); :info:build ^ :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build [ 9%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o :info:build 1 warning generated. :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildAd.c :info:build [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/mgparm.c :info:build [ 11%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildBd.c :info:build [ 12%] Building C object src/generic/CMakeFiles/apbs_generic.dir/femparm.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/femparm.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/femparm.c :info:build [ 13%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildGd.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildGd.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildGd.c :info:build [ 15%] Building C object src/generic/CMakeFiles/apbs_generic.dir/pbeparm.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/pbeparm.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/pbeparm.c :info:build [ 16%] Building C object src/generic/CMakeFiles/apbs_generic.dir/bemparm.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/bemparm.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/bemparm.c :info:build [ 17%] Building C object src/generic/CMakeFiles/apbs_generic.dir/geoflowparm.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/geoflowparm.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/geoflowparm.c :info:build [ 18%] Building C object src/generic/CMakeFiles/apbs_generic.dir/apolparm.c.o :info:build cd 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/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_pmgc.dir/mypdec.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/mypdec.c :info:build [ 43%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/newtond.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch 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&& /opt/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_pmgc.dir/link.txt --verbose=ON :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_pmgc.a CMakeFiles/apbs_pmgc.dir/buildAd.c.o CMakeFiles/apbs_pmgc.dir/buildBd.c.o CMakeFiles/apbs_pmgc.dir/buildGd.c.o CMakeFiles/apbs_pmgc.dir/buildPd.c.o CMakeFiles/apbs_pmgc.dir/cgd.c.o CMakeFiles/apbs_pmgc.dir/gsd.c.o CMakeFiles/apbs_pmgc.dir/matvecd.c.o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o CMakeFiles/apbs_pmgc.dir/mypdec.c.o CMakeFiles/apbs_pmgc.dir/newtond.c.o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o CMakeFiles/apbs_pmgc.dir/powerd.c.o CMakeFiles/apbs_pmgc.dir/smoothd.c.o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib 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"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg/CMakeFiles/apbs_mg.dir/depend.internal". :info:build [ 50%] Linking CXX static library ../../apbs/lib/libapbs_geoflow.a :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /opt/local/bin/cmake -P CMakeFiles/apbs_geoflow.dir/cmake_clean_target.cmake :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_geoflow.dir/link.txt --verbose=ON :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_geoflow.a CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o CMakeFiles/apbs_geoflow.dir/modules.cpp.o CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o :info:build Scanning dependencies of target apbs_mg :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build 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-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vopot.c :info:build [ 55%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmg.c.o :info:build [ 55%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmgp.c :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmg.c :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c:229:13: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { :info:build ~~~^ ~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c:229:25: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { :info:build ~~~^ ~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c:229:37: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { :info:build ~~~^ ~ :info:build 3 warnings generated. :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib ../../apbs/lib/libapbs_geoflow.a :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmg.c:2927:25: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] :info:build switch (thee->chargeSrc) { :info:build ^ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmg.c:3080:25: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] :info:build switch (thee->chargeSrc) :info:build ^ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmg.c:3658:17: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] :info:build switch (thee->chargeSrc) { :info:build ^ :info:build 3 warnings generated. :info:build [ 56%] Linking C static library ../../apbs/lib/libapbs_mg.a :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /opt/local/bin/cmake -P CMakeFiles/apbs_mg.dir/cmake_clean_target.cmake :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_mg.dir/link.txt --verbose=ON :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_mg.a CMakeFiles/apbs_mg.dir/vgrid.c.o CMakeFiles/apbs_mg.dir/vmgrid.c.o CMakeFiles/apbs_mg.dir/vopot.c.o CMakeFiles/apbs_mg.dir/vpmg.c.o CMakeFiles/apbs_mg.dir/vpmgp.c.o :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib ../../apbs/lib/libapbs_mg.a :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build [ 56%] Built target apbs_mg :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/benchmark.dir/build.make tools/mesh/CMakeFiles/benchmark.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2mol.dir/build.make tools/mesh/CMakeFiles/dx2mol.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dx2uhbd.dir/build.make tools/mesh/CMakeFiles/dx2uhbd.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/dx2uhbd.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd 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"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". :info:build Scanning dependencies of target del2dx :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/del2dx.dir/build.make tools/mesh/CMakeFiles/del2dx.dir/build :info:build make[2]: Entering directory 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-I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/dxmath.dir/dxmath.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/dxmath.c :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o 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"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=ON :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first 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/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/mergedx2.c:12:9: warning: 'MAX_INPUT' macro redefined [-Wmacro-redefined] :info:build #define MAX_INPUT 512 :info:build ^ :info:build /usr/include/sys/syslimits.h:82:9: note: previous definition is here :info:build #define MAX_INPUT 1024 /* max bytes in terminal input */ :info:build ^ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/mergedx2.c:372:7: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { :info:build ~~~^ ~ :info:build 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-Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/mergedx.dir/mergedx.c.o -o ../../apbs/tools/bin/mergedx ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib :info:build Scanning dependencies of target mgmesh :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/build :info:build [ 70%] Linking C executable ../../apbs/tools/bin/dx2uhbd :info:build cd 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/opt/local/bin/cmake -E cmake_link_script CMakeFiles/dxmath.dir/link.txt --verbose=ON :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/analysis.dir/link.txt --verbose=ON :info:build 4 warnings generated. :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/dx2uhbd.dir/dx2uhbd.c.o -o ../../apbs/tools/bin/dx2uhbd ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/dx2mol.dir/dx2mol.c.o -o ../../apbs/tools/bin/dx2mol ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib :info:build 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:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/manip 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"/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/coulomb.dir/depend.internal". :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/coulomb.dir/depend.internal". :info:build Scanning dependencies of target tensor2dx :info:build make[2]: Leaving directory 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/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src 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/opt/local/bin/cmake -E cmake_link_script CMakeFiles/smooth.dir/link.txt --verbose=ON :info:build [ 95%] Linking C executable ../../apbs/tools/bin/born :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/born.dir/link.txt --verbose=ON :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/value.dir/value.c.o -o ../../apbs/tools/bin/value ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a 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/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/multivalue.dir/multivalue.c.o -o ../../apbs/tools/bin/multivalue ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/uhbd_asc2bin.dir/uhbd_asc2bin.c.o -o ../../apbs/tools/bin/uhbd_asc2bin ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/smooth.dir/smooth.c.o -o ../../apbs/tools/bin/smooth ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a 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