Opened 9 years ago

Closed 9 years ago

#33892 closed submission (fixed)

yorick-hdf5 (new port) - Hierarchical Data Format 5 interface for Yorick

Reported by: paumard Owned by: neverpanic (Clemens Lang)
Priority: Normal Milestone:
Component: ports Version: 2.0.4
Keywords: Cc:
Port:

Description

Hi,

As often with Yorick plug-ins, a check file is available in the tarball. You can get it online from:

https://github.com/frigaut/yorick-hdf5/blob/0.8.0/check.i

and run it with:

yorick -batch check.i

Regards, Thibaut.

Attachments (1)

Portfile (1.5 KB) - added by paumard 9 years ago.
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Download all attachments as: .zip

Change History (5)

Changed 9 years ago by paumard

Attachment: Portfile added

add license information

comment:1 Changed 9 years ago by neverpanic (Clemens Lang)

Owner: changed from macports-tickets@… to cal@…
Status: newassigned

Commited in r92400. The test however, segfaults on me:

========================================================================
========== IMPORTANT COMPATIBILITY NOTE ABOUT HDF5 FILES ===============
=========== GENERATED WITH YORICK HDF5 PLUGIN V < 0.6.2  ===============
========================================================================

Please read if you have hdf5 files generated with the yorick hdf5 plugin
version 0.6.1 or earlier. These version were affected by a bug that 
affected the compatibility of yorick generated data files with external
I/O programs (HDF utilities and other external resources using the HDF5
general I/O librairies). Namely, multi-dimensional arrays generated
with the yorick HDF5 plugin appeared to external hdf5 resources with
swapped dimensions (but not swapped elements). For instance, a 2x3 array
as:
           1    2
           3    4
           5    6
ERROR (VM idle or lost) Segmentation violation interrupt (SIGSEGV)
WARNING aborting on recursive calls to YError
yorick: quitting on error in batch mode

comment:2 Changed 9 years ago by paumard

Thanks.

It works for me. I'll try asking a friend running Lion to test. A backtrace would be helpful.

Regards, Thibaut.

comment:3 Changed 9 years ago by paumard

OK, upstream seems to be aware of that and will commit a fix within a few days.

comment:4 Changed 9 years ago by neverpanic (Clemens Lang)

Resolution: fixed
Status: assignedclosed

OK, feel free to open a new ticket for the update assigning it to me.

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