bowtie doesn't build on ML

[mesh89@…]

Trying to install bowtie 0.12.7 gives me this output

--->  Computing dependencies for bowtie
--->  Fetching archive for bowtie
--->  Attempting to fetch bowtie-0.12.7_0.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/bowtie
--->  Attempting to fetch bowtie-0.12.7_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/bowtie
--->  Attempting to fetch bowtie-0.12.7_0.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/bowtie
--->  Fetching distfiles for bowtie
--->  Verifying checksum(s) for bowtie
--->  Extracting bowtie
--->  Configuring bowtie
--->  Building bowtie
Error: org.macports.build for port bowtie returned: command execution failed
Please see the log file for port bowtie for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_bowtie/bowtie/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port bowtie failed

Attaching log

[mf2k (Frank Schima)]

In the future, please fill in the Port field and Cc the port maintainer(s).

[ci42]

It seems that bowtie doesn't like clang. See the attached patch.

[jmroot (Joshua Root)]

Actually fixing the invalid code would be better (clang is usually right when it complains about something).

[ci42]

Committed suggested patch in r100342 (maintainer timeout).

Opened a issue upstream: ​http://sourceforge.net/tracker/?func=detail&aid=3594088&group_id=236897&atid=1101606

[ci42]

Version 0.12.9 fixes the build issues with clang (see #37335).