atlas install fails on mavericks 10.9.2 - command execution failed

[macports@…]

Hello,

atlas fails to install on my mavericks 10.9.2 mac with a command execution failed

This is trying to install with clang-3.3, but I have also tried the +clang option without success.

The error occurs during the applying patches stage:

--->  Applying patches to atlas
Error: org.macports.patch for port atlas returned: command execution failed
Please see the log file for port atlas for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port atlas failed

Log file attached.

Any help very gratefully appreciated

[macports@…]

atlas install log file

[dbevans (David B. Evans)]

Please use WikiFormatting when submitting tickets to make terminal output more readable.

[dbevans (David B. Evans)]

The actual error is this:

376	:debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/atlas/atlas3.10.1.tar.bz2' | /usr/bin/gnutar --no-same-owner -xkf - || true'
377	:debug:extract Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/atlas/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/atlas/atlas3.10.1.tar.bz2' | /usr/bin/gnutar --no-same-owner -xkf - || true
378	:info:extract sh: /usr/bin/gnutar: No such file or directory

This indicates an improperly updated MacPorts installation after moving to Mavericks.

Please read the wiki:MavericksProblems concerning Updating MacPorts Base and follow wiki:Migration.