qrupdate @1.1.2_2: build fails finding libtatlas

[mndavidoff (Monte Davidoff)]

After upgrading atlas, installing qrupdate fails because libtatlas cannot be found.

$ port installed atlas
The following ports are currently installed:
  atlas @3.10.2_0+gcc48 (active)
$ sudo port -vs install qrupdate
...
libtool -o ../libqrupdate.a caxcpy.o cch1dn.o cch1up.o cchdex.o cchinx.o cchshx.o cgqvec.o cqhqr.o cqr1up.o cqrdec.o cqrder.o cqrinc.o cqrinr.o cqrot.o cqrqh.o cqrshc.o cqrtv1.o dch1dn.o dch1up.o dchdex.o dchinx.o dchshx.o dgqvec.o dqhqr.o dqr1up.o dqrdec.o dqrder.o dqrinc.o dqrinr.o dqrot.o dqrqh.o dqrshc.o dqrtv1.o sch1dn.o sch1up.o schdex.o schinx.o schshx.o sgqvec.o sqhqr.o sqr1up.o sqrdec.o sqrder.o sqrinc.o sqrinr.o sqrot.o sqrqh.o sqrshc.o sqrtv1.o zaxcpy.o zch1dn.o zch1up.o zchdex.o zchinx.o zchshx.o zgqvec.o zqhqr.o zqr1up.o zqrdec.o zqrder.o zqrinc.o zqrinr.o zqrot.o zqrqh.o zqrshc.o zqrtv1.o clu1up.o dlu1up.o slu1up.o zlu1up.o clup1up.o dlup1up.o slup1up.o zlup1up.o
make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src'
gfortran-mp-4.8 -m64 -fimplicit-none -O3 -funroll-loops   -dynamiclib -o ../libqrupdate.dylib -install_name /opt/local/lib/libqrupdate.1.dylib caxcpy.o cch1dn.o cch1up.o cchdex.o cchinx.o cchshx.o cgqvec.o cqhqr.o cqr1up.o cqrdec.o cqrder.o cqrinc.o cqrinr.o cqrot.o cqrqh.o cqrshc.o cqrtv1.o dch1dn.o dch1up.o dchdex.o dchinx.o dchshx.o dgqvec.o dqhqr.o dqr1up.o dqrdec.o dqrder.o dqrinc.o dqrinr.o dqrot.o dqrqh.o dqrshc.o dqrtv1.o sch1dn.o sch1up.o schdex.o schinx.o schshx.o sgqvec.o sqhqr.o sqr1up.o sqrdec.o sqrder.o sqrinc.o sqrinr.o sqrot.o sqrqh.o sqrshc.o sqrtv1.o zaxcpy.o zch1dn.o zch1up.o zchdex.o zchinx.o zchshx.o zgqvec.o zqhqr.o zqr1up.o zqrdec.o zqrder.o zqrinc.o zqrinr.o zqrot.o zqrqh.o zqrshc.o zqrtv1.o clu1up.o dlu1up.o slu1up.o zlu1up.o clup1up.o dlup1up.o slup1up.o zlup1up.o \
		-L/opt/local/lib -ltatlas -L/opt/local/lib -llapack
ld: library not found for -ltatlas
collect2: error: ld returned 1 exit status
make[1]: *** [../libqrupdate.dylib] Error 1
make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_qrupdate/qrupdate/work/qrupdate-1.1.2/src'
...

[jqm12@…]

Same happens here. Please provide a fix. Thanks.

[jqm12@…]

Is there any quick workaround for this issue? Thanks

[gnw3]

Cc Me!

[gnw3]

Replying to jqm12@…:

Is there any quick workaround for this issue? Thanks

The new atlas @3.10.2_0+gcc48 doesn't build the threaded library (libtatlas.dylib). in {{{$(port file atlas)}} there is a cryptic comment that may be hint:

    # Threading relies on OpenMP if gcc compilers are selected
    # Does not seem to work reliably. Disabled.

The previous version of atlas did provide threaded libraries, but I don't know if they have unreliability that I haven't encountered or if it is the newer version that is not reliable.

$ sudo port activate atlas @3.10.1_5+gcc48
--->  Computing dependencies for atlas
--->  Activating atlas @3.10.1_5+gcc48
--->  Cleaning atlas
$ ls /opt/local/lib/lib*atlas*
19072 /opt/local/lib/libatlas.a		28456 /opt/local/lib/libtatlas.dylib*
28216 /opt/local/lib/libsatlas.dylib*

[mndavidoff (Monte Davidoff)]

This issue appears to be fixed by atlas @3.10.2_1 (r122764). It's all right with me to close this ticket.

$ port installed atlas qrupdate
The following ports are currently installed:
  atlas @3.10.2_1+gcc48 (active)
  qrupdate @1.1.2_2+atlas+gcc48 (active)