Opened 9 years ago

Closed 21 months ago

#49159 closed defect (wontfix)

hdf5 @1.8.15-patch1_0+gcc5+mpich test fails

Reported by: dstrubbe (David Strubbe) Owned by: mascguy (Christopher Nielsen)
Priority: Normal Milestone:
Component: ports Version: 2.3.4
Keywords: Cc: eborisch (Eric A. Borisch), Dave-Allured (Dave Allured), potmj (Michael Pot)
Port: hdf5 mpich

Description

The test phase fails for hdf5 +gcc5 +mpich -cxx. This is not one of the "experimental" variants that the port warns about. The failure seems to lead to test failures in the dependents netcdf, netcdf-fortran, and octopus. I found that +gcc5 and +gcc5 +cxx both were successful, but +gcc5 +mpich +cxx also failed. Unfortunately the test log does not provide much information about the problem; I'm not sure if there are more details to be found anywhere else. The file hdf5/work/hdf5-1.8.15-patch1/test/testhdf5.chklog just has the part below, which is from the main.log. I am using XCode 6.4 on OSX 10.10.5 Yosemite.

/Applications/Xcode.app/Contents/Developer/usr/bin/make  check-TESTS
===Serial tests in test begin Wed Oct  7 12:19:44 EDT 2015===
============================
Testing  testhdf5 
============================
 testhdf5  Test Log
============================
Command terminated abnormally.
       11.57 real         0.03 user         0.03 sys
make[4]: *** [testhdf5.chkexe_] Error 1
make[3]: *** [build-check-s] Error 2
make[2]: *** [test] Error 2
make[1]: *** [check-am] Error 2
make: *** [check-recursive] Error 1
Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.8.15-patch1" && /usr/bin/make check 
Exit code: 2
Error: org.macports.test for port hdf5 returned: command execution failed

Change History (7)

comment:1 Changed 3 years ago by mascguy (Christopher Nielsen)

Cc: mascguy added

comment:2 Changed 3 years ago by mascguy (Christopher Nielsen)

Cc: mascguy removed
Owner: changed from mamoll to mascguy
Status: newassigned

comment:3 Changed 3 years ago by mascguy (Christopher Nielsen)

Cc: eborisch added

comment:4 Changed 3 years ago by mascguy (Christopher Nielsen)

This still looks like an issue, even with a newer gcc, like gcc 7.

Interestingly enough, though, I'm not seeing that failure when utilizing openmpi as the MPI provider.

comment:5 Changed 2 years ago by Dave-Allured (Dave Allured)

Cc: Dave-Allured added

comment:6 Changed 2 years ago by potmj (Michael Pot)

Cc: potmj added

comment:7 Changed 21 months ago by mascguy (Christopher Nielsen)

Resolution: wontfix
Status: assignedclosed

There's not much we can do to fix, without someone spending significant time digging into this.

If runtime issues are occurring, then we can take another look. Otherwise let's close.

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