Opened 8 years ago

Closed 8 years ago

#50273 closed defect (fixed)

atlas build fails

Reported by: cjohnson@… Owned by: Veence (Vincent)
Priority: Normal Milestone:
Component: ports Version: 2.3.4
Keywords: Cc: orcioni@…
Port: atlas

Description (last modified by ryandesign (Ryan Carsten Schmidt))

xcode version 7C68 -- OS X (10.11.2)
New machine (new MAC user) -- have done 

  sudo port selfupdate
  sudo port upgrade outdated

Everything worked until the installation of atlas

Can not get past this error with the build of atlas

Here is the log file: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log 

version:1
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 503
:debug:main Executing org.macports.main (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.archivefetch (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.fetch (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.checksum (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.extract (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.patch (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.configure (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Sat Jan  9 12:07:59 PST 2016
:notice:build --->  Building atlas
:debug:build Executing org.macports.build (atlas)
:debug:build port disallows a parallel build
:debug:build Environment: 
CC='/usr/bin/clang'
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
CXX='/usr/bin/clang++'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.11'
:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build'
:debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build 
:info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top build
:info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build cd bin/ ; /Applications/Xcode.app/Contents/Developer/usr/bin/make xatlas_build
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build make[2]: `xatlas_build' is up to date.
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build make[2]: `IArchDef.grd' is up to date.
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -s ATL_buildinfo.o
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib
:info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1 ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib
:info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make dgen
:info:build make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make Make_drot
:info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[6]: `Make_drot' is up to date.
:info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make_drot lib
:info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[6]: Nothing to be done for `lib'.
:info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make Make_daxpby
:info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[6]: `Make_daxpby' is up to date.
:info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make_daxpby lib
:info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[6]: Nothing to be done for `lib'.
:info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make Make_dcpsc
:info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1 ; /Applications/Xcode.app/Contents/Developer/usr/bin/make dinstall_cpsc
:info:build make[7]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1'
:info:build rm -f GEN/*
:info:build ./xcpscsrch -p d
:info:build TST: make dcpsctest urout=cpsc1_x0y0.c opt=" -X 4 1 -1 2 -3 -Y 4 1 -1 3 -2" 
:info:build make[8]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1'
:info:build rm -f dcpsc.c dcpsc.o xdcpsctst
:info:build cp /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//tune/blas/level1/CPSC/cpsc1_x0y0.c dcpsc.c
:info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=3100 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=3100 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma  -DDREAL -c dcpsc.c
:info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=3100 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=3100 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma  -o xdcpsctst dcpsctest.o \
:info:build           ATL_dcpsc_stub.o dcpsc.o /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/lib/libtstatlas.a -lpthread -lm
:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin/ATLrun.sh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1 xdcpsctst -n 777 -X 4 1 -1 2 -3 -Y 4 1 -1 3 -2
:info:build   ITST         N     alpha  incX  incY    TEST
:info:build ======  ========  ========  ====  ====  ======
:info:build      0       777      1.00     1     1  PASSED
:info:build      1       777     -1.00     1     1  PASSED
:info:build      2       777      0.90     1     1  PASSED
:info:build      3       777      1.00     1    -1  PASSED
:info:build      4       777     -1.00     1    -1  PASSED
:info:build      5       777      0.90     1    -1  PASSED
:info:build      6       777      1.00     1     3  PASSED
:info:build      7       777     -1.00     1     3  PASSED
:info:build      8       777      0.90     1     3  PASSED
:info:build      9       777      1.00     1    -2  PASSED
:info:build     10       777     -1.00     1    -2  PASSED
:info:build     11       777      0.90     1    -2  PASSED
:info:build     12       777      1.00    -1     1  PASSED
:info:build     13       777     -1.00    -1     1  PASSED
:info:build     14       777      0.90    -1     1  PASSED
:info:build     15       777      1.00    -1    -1  PASSED
:info:build     16       777     -1.00    -1    -1  PASSED
:info:build     17       777      0.90    -1    -1  PASSED
:info:build     18       777      1.00    -1     3  PASSED
:info:build     19       777     -1.00    -1     3  PASSED
:info:build     20       777      0.90    -1     3  PASSED
:info:build     21       777      1.00    -1    -2  PASSED
:info:build     22       777     -1.00    -1    -2  PASSED
:info:build     23       777      0.90    -1    -2  PASSED
:info:build     24       777      1.00     2     1  PASSED
:info:build     25       777     -1.00     2     1  PASSED
:info:build     26       777      0.90     2     1  PASSED
:info:build     27       777      1.00     2    -1  PASSED
:info:build     28       777     -1.00     2    -1  PASSED
:info:build     29       777      0.90     2    -1  PASSED
:info:build     30       777      1.00     2     3  PASSED
:info:build     31       777     -1.00     2     3  PASSED
:info:build     32       777      0.90     2     3  PASSED
:info:build     33       777      1.00     2    -2  PASSED
:info:build     34       777     -1.00     2    -2  PASSED
:info:build     35       777      0.90     2    -2  PASSED
:info:build     36       777      1.00    -3     1  PASSED
:info:build     37       777     -1.00    -3     1  PASSED
:info:build     38       777      0.90    -3     1  PASSED
:info:build     39       777      1.00    -3    -1  PASSED
:info:build     40       777     -1.00    -3    -1  PASSED
:info:build     41       777      0.90    -3    -1  PASSED
:info:build     42       777      1.00    -3     3  PASSED
:info:build     43       777     -1.00    -3     3  PASSED
:info:build     44       777      0.90    -3     3  PASSED
:info:build     45       777      1.00    -3    -2  PASSED
:info:build     46       777     -1.00    -3    -2  PASSED
:info:build     47       777      0.90    -3    -2  PASSED
:info:build ALL CPSC SANITY TESTS PASSED.
:info:build 
:info:build make[8]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1'
:info:build TST: make dcpsctest urout=cpsc1_x1y1.c opt="" 
:info:build make[8]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1'
:info:build rm -f dcpsc.c dcpsc.o xdcpsctst
:info:build cp /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//tune/blas/level1/CPSC/cpsc1_x1y1.c dcpsc.c
:info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=3100 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=3100 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma  -DDREAL -c dcpsc.c
:info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=3100 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=3100 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma  -o xdcpsctst dcpsctest.o \
:info:build           ATL_dcpsc_stub.o dcpsc.o /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/lib/libtstatlas.a -lpthread -lm
:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin/ATLrun.sh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1 xdcpsctst -n 777 
:info:build   ITST         N     alpha  incX  incY    TEST
:info:build ======  ========  ========  ====  ====  ======
:info:build      0       777      1.00     1     1  PASSED
:info:build      1       777     -1.00     1     1  PASSED
:info:build      2       777      0.90     1     1  PASSED
:info:build ALL CPSC SANITY TESTS PASSED.
:info:build 
:info:build make[8]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1'
:info:build NO GENERAL CASE SURVIVED!!  ABORTING!!
:info:build   ID  incX  incY  alpha  beta  ROUT
:info:build ====  ====  ====  =====  ====  =============
:info:build    1     0     0     2     2  cpsc1_x0y0.c
:info:build    2     1     1     2     2  cpsc1_x1y1.c
:info:build 
:info:build   ID  incX  incY  alpha  beta  ROUT
:info:build ====  ====  ====  =====  ====  =============
:info:build    1     0     0     2     2  cpsc1_x0y0.c
:info:build    2     1     1     2     2  cpsc1_x1y1.c
:info:build 
:info:build    incX  incY  alpha  beta    ID  ROUTINE
:info:build    ====  ====  =====  ====  ====  ==================
:info:build       0     0      2     2    -1  UNKNOWN
:info:build       1     1      2     2    -1  UNKNOWN
:info:build 
:info:build make[7]: *** [dinstall_cpsc] Error 255
:info:build make[7]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/blas/level1'
:info:build make[6]: *** [Make_dcpsc] Error 2
:info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[5]: *** [dgen] Error 2
:info:build make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[4]: *** [dlib] Error 2
:info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/blas/level1'
:info:build make[3]: *** [lib.grd] Error 2
:info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil'
:info:build make[2]: *** [IStage1] Error 2
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build ERROR 703 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR DETAILS.
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build ; /Applications/Xcode.app/Contents/Developer/usr/bin/make error_report
:info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top error_report
:info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
:info:build /usr/bin/clang -v 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
:info:build Apple LLVM version 7.0.2 (clang-700.1.81)
:info:build Target: x86_64-apple-darwin15.2.0
:info:build Thread model: posix
:info:build /usr/bin/clang -V 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
:info:build clang: error: argument to '-V' is missing (expected 1 value)
:info:build clang: error: no input files
:info:build make[4]: [error_report] Error 1 (ignored)
:info:build /usr/bin/clang --version 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
:info:build tar cf error_Corei364AVXMAC.tar Make.inc bin/INSTALL_LOG/*
:info:build bzip2 error_Corei364AVXMAC.tar
:info:build bzip2: Output file error_Corei364AVXMAC.tar.bz2 already exists.
:info:build make[4]: *** [error_report] Error 1
:info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make[3]: *** [error_report] Error 2
:info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make[2]: *** [error_report] Error 2
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cat: ../../CONFIG/error.txt: No such file or directory
:info:build cat: ../../CONFIG/error.txt: No such file or directory
:info:build 
:info:build 
:info:build BEGIN STAGE 1-0-0: SYSTEM PROBE/AUX COMPILE at 12:07
:info:build make[1]: *** [build] Error 255
:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make: *** [build] Error 2
:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build 
:info:build Exit code: 2
:error:build org.macports.build for port atlas returned: command execution failed
:debug:build Error code: CHILDSTATUS 92633 2
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"portbuild::build_main org.macports.build"
    ("eval" body line 1)
    invoked from within
"eval $procedure $targetname"
:info:build Warning: targets not executed for atlas: org.macports.activate org.macports.build org.macports.destroot org.macports.install
:error:build Failed to install atlas
:debug:build Registry error: libnetpbm not registered as installed & active.
    invoked from within
"registry_active $subport"
    invoked from within
"$workername eval registry_active \$subport"
:notice:build Please see the log file for port atlas for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log

Attachments (2)

main.log.gz​ (523.3 KB) - added by orcioni@… 8 years ago.
main.log
main.log.2.gz​ (25.9 KB) - added by orcioni@… 8 years ago.

Download all attachments as: .zip

Change History (19)

comment:1 Changed 8 years ago by ryandesign (Ryan Carsten Schmidt)

Description: modified (diff)
Owner: changed from macports-tickets@… to vince@…
Port: atlas added; octave removed
Summary: octave atlas build fails → atlas build fails

That log file is not from a ​clean build attempt. Please "sudo port clean atlas", try again, and attach (not paste) the entire (compressed) log to this ticket.

Changed 8 years ago by orcioni@…

Attachment: main.log.gz​ added

main.log

comment:2 Changed 8 years ago by orcioni@…

I made the command "sudo port clean atlas" and then "sudo port upgrade outdated", but always getting the same error.

In the attached mail.log file, I found this error: ":info:build clang: error: no such file or directory: '/opt/local/lib/gcc4.8/libgfortran.dylib'".

Since It is my first message, I think I attached the file in a wrong place. Sorry.

comment:3 Changed 8 years ago by orcioni@…

Cc: orcioni@… added

Cc Me!

comment:4 Changed 8 years ago by Veence (Vincent)

Yes, there is something fishy here. What do you get when you type in a Terminal: 

ls /opt/local/lib/*/libgfortran.*

Thanks!

comment:5 in reply to:  4 Changed 8 years ago by orcioni@…

Replying to vince@…:

Yes, there is something fishy here. What do you get when you type in a Terminal: 

ls /opt/local/lib/*/libgfortran.*

Thanks!

/opt/local/lib/gcc48/libgfortran.3.dylib

/opt/local/lib/gcc48/libgfortran.a

/opt/local/lib/gcc48/libgfortran.dylib

/opt/local/lib/gcc48/libgfortran.spec

/opt/local/lib/gcc5/libgfortran.3.dylib

/opt/local/lib/gcc5/libgfortran.a

/opt/local/lib/gcc5/libgfortran.dylib

/opt/local/lib/gcc5/libgfortran.spec

/opt/local/lib/libgcc/libgfortran.3.dylib

comment:6 Changed 8 years ago by orcioni@…

Please do not consider previous reply. I don't konw how to cancel it.

comment:7 Changed 8 years ago by orcioni@…

Here you can find the correct answer:

/opt/local/lib/gcc47/libgfortran.3.dylib /opt/local/lib/gcc48/libgfortran.a
/opt/local/lib/gcc47/libgfortran.a /opt/local/lib/gcc48/libgfortran.dylib
/opt/local/lib/gcc47/libgfortran.dylib /opt/local/lib/gcc48/libgfortran.spec
/opt/local/lib/gcc47/libgfortran.spec /opt/local/lib/libgcc/libgfortran.3.dylib
/opt/local/lib/gcc48/libgfortran.3.dylib

comment:8 Changed 8 years ago by orcioni@…

So the problem seems to be the dot in the path ? thanks!

comment:9 Changed 8 years ago by Veence (Vincent)

Yes. I am going to modify that.

Un attimino.

comment:10 Changed 8 years ago by Veence (Vincent)

Done in r144924. Please update in a few minutes and try again. Do: port -o install atlas. Don’t forget the -o, otherwise you’ll start from scratch and it’ll take hours. If you use the -o flag, you'll pick up when you left off, despite the new Portfile, so you will save a lot of time.

Changed 8 years ago by orcioni@…

Attachment: main.log.2.gz​ added

comment:11 Changed 8 years ago by orcioni@…

I'm sorry to say, but either with "sudo port -o install atlas" or "sudo port upgrade outdated", the error is always the same.
I updated macport, my Portfile seems correct, it begins with: "#$Id: Portfile 144924 2016-01-21 13:29:36Z vince@… $", and is localted in /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/atlas/Portfile. I attach the main.log. thanks!

Last edited 8 years ago by orcioni@… (previous) (diff)

comment:12 Changed 8 years ago by Veence (Vincent)

Yeah, I’m sorry, using the -o flag does not solve your problem, since the build is already configured.

You have two choices: either you start over building during the night (sudo port clean atlas; sudo port install atlas) or the hard way modifying the faulty path directly in the Makefile. Tell me what you prefer (I can help you if you plump for the second option).

comment:13 Changed 8 years ago by orcioni@…

OK, I'll start soon a remotely freshly building overnight. Now I'm home. I want also thank you very much for your help.

comment:14 Changed 8 years ago by Veence (Vincent)

Prego! Let me know if the build succeeds, so that I can close the bug.

comment:15 Changed 8 years ago by orcioni@…

Absolutely.

comment:16 Changed 8 years ago by orcioni@…

OK. The installation succeded.

"sudo port upgrade outdated" this morning started from curl-ca-bundle. Thanks

comment:17 Changed 8 years ago by Veence (Vincent)

Resolution: → fixed
Status: new → closed

Thanks. I’ll close the bug.

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