Opened 3 years ago

Last modified 2 years ago

#53997 assigned defect

ncarg 6.4 el cap build fails

Reported by: basmac Owned by: tenomoto (Takeshi Enomoto)
Priority: Normal Milestone:
Component: ports Version: 2.4.1
Keywords: Cc: Dave-Allured (Dave Allured)
Port: ncarg

Description (last modified by ryandesign (Ryan Schmidt))

ncarg 6.4 builds fine on Sierra but ncl fails on El Cap.
attached El Cap log.

Attachments (1)

ncarg.log (3.1 MB) - added by basmac 3 years ago.
port -d install ncarg

Change History (8)

Changed 3 years ago by basmac

Attachment: ncarg.log added

port -d install ncarg

comment:1 Changed 3 years ago by basmac

NB. ncl 6.4 passes all the tests that 6.3 fails, on Sierra.

comment:2 Changed 3 years ago by mf2k (Frank Schima)

Cc: takeshi@… removed
Keywords: ncarg 6.4 removed
Owner: set to tenomoto
Status: newassigned

comment:3 Changed 3 years ago by ryandesign (Ryan Schmidt)

Description: modified (diff)

comment:4 Changed 3 years ago by tenomoto (Takeshi Enomoto)

I don't have El Capitan, but I was able to reproduce the problem on Mavericks. There are two problems.

  1. ezmapdemo, tdpackdemo and nnlag don't get libncarg_gks/awi/ggkwdr_stub.o linked. For each binary yMakefile needs a patch.
  2. In ncarg2d/src/libncarg_gks/cdrivers and ni/src/lib/hlu, headers are included with <> rather than "". So those already installed are used. There are too many files to patch. So I decided to force deactivate the old version before build. This problem caused the failure of libhlu.a, which is essential for ncl. I'll report this problem upstream.

Done in [df8fcee84fc6dea6bcfc17c831f43b0decc40ea7/macports-ports] If you can build ncarg with ncl successfully, I will close this ticket.

comment:5 Changed 3 years ago by basmac

Trying to rebuild ncarg, but getting errors in autopen and dirac....

comment:6 Changed 3 years ago by basmac

ncarg and ncl build now using 6.4 as I removed autogen and dirac.
On tests thought that were fixed on 6.4 (bar.ncl) our local build works and the macports build fails.
bash-3.2# /usr/local/bin/ncl /home/bmcinnes/test_regrid_grid.ncl
 Copyright (C) 1995-2017 - All Rights Reserved
 University Corporation for Atmospheric Research
 NCAR Command Language Version 6.4.0
 The use of this software is governed by a License Agreement.
 See http://www.ncl.ucar.edu/ for more details.
(0)	Regrid option is on.
(0)	Plot option is off.
(0)	defining data array

Variable: data
Type: float
Total Size: 259200 bytes
            64800 values
Number of Dimensions: 2
Dimensions and sizes:	[lat | 180] x [lon | 360]
Coordinates:
            lat: [-89.5..89.5]
            lon: [ 0..359]
(0)	Regridding!
(0)	defining new lat and lon arrays
(0)	defining options for regridding
(0)	Regridding using method = neareststod

Variable: dataout
Type: float
Total Size: 1036800 bytes
            259200 values
Number of Dimensions: 2
Dimensions and sizes:	[lat | 360] x [lon | 720]
Coordinates:
            lat: [-89.75..89.75]
            lon: [   0..359.5]
Number Of Attributes: 3
  missing_value :	9.96921e+36
  remap :	remapped via ESMF_regrid_with_weights: Nearest source to destination
  _FillValue :	9.96921e+36
bash-3.2# /opt/local/bin/ncl /home/bmcinnes/test_regrid_grid.ncl
 Copyright (C) 1995-2017 - All Rights Reserved
 University Corporation for Atmospheric Research
 NCAR Command Language Version 6.4.0
 The use of this software is governed by a License Agreement.
 See http://www.ncl.ucar.edu/ for more details.
(0)	Regrid option is on.
(0)	Plot option is off.
(0)	defining data array

Variable: data
Type: float
Total Size: 259200 bytes
            64800 values
Number of Dimensions: 2
Dimensions and sizes:	[lat | 180] x [lon | 360]
Coordinates:
            lat: [-89.5..89.5]
            lon: [ 0..359]
(0)	Regridding!
(0)	defining new lat and lon arrays
(0)	defining options for regridding
(0)	Regridding using method = neareststod
fatal:Variable (Opt) is undefined
fatal:["Execute.c":8640]:Execute: Error occurred at or near line 1613 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl

fatal:["Execute.c":8640]:Execute: Error occurred at or near line 1847 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl

fatal:["Execute.c":8640]:Execute: Error occurred at or near line 3910 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl

fatal:["Execute.c":8640]:Execute: Error occurred at or near line 4042 in file $NCARG_ROOT/lib/ncarg/nclscripts/esmf/ESMF_regridding.ncl

fatal:["Execute.c":8640]:Execute: Error occurred at or near line 69 in file /home/bmcinnes/test_regrid_grid.ncl

bash-3.2#

bash-3.2# /opt/local/bin/ncl /home/bmcinnes/bar.ncl

Copyright (C) 1995-2017 - All Rights Reserved University Corporation for Atmospheric Research NCAR Command Language Version 6.4.0 The use of this software is governed by a License Agreement. See http://www.ncl.ucar.edu/ for more details.

Variable: nc_file_type Type: string Total Size: 8 bytes

1 values

Number of Dimensions: 1 Dimensions and sizes: [1] Coordinates: (0) netcdf3 fatal:Variable (nc_file_type) is undefined fatal:["Execute.c":8640]:Execute: Error occurred at or near line 10 in file /home/bmcinnes/bar.ncl

fatal:["Execute.c":8640]:Execute: Error occurred at or near line 16 in file /home/bmcinnes/bar.ncl

bash-3.2# /usr/local/bin/ncl /home/bmcinnes/bar.ncl

Copyright (C) 1995-2017 - All Rights Reserved University Corporation for Atmospheric Research NCAR Command Language Version 6.4.0 The use of this software is governed by a License Agreement. See http://www.ncl.ucar.edu/ for more details.

Variable: nc_file_type Type: string Total Size: 8 bytes

1 values

Number of Dimensions: 1 Dimensions and sizes: [1] Coordinates: (0) netcdf3

Variable: nc_file_type Type: string Total Size: 8 bytes

1 values

Number of Dimensions: 1 Dimensions and sizes: [1] Coordinates: (0) netcdf4

Variable: nc_file_type Type: string Total Size: 8 bytes

1 values

Number of Dimensions: 1 Dimensions and sizes: [1] Coordinates: (0) netcdf3 bash-3.2#

bash-3.2# cat /home/bmcinnes/bar.ncl

procedure curvilinear_to_SCRIP(Opt[1]:logical) begin

if (isatt(Opt,"NetCDFType").and.\

str_lower(Opt@NetCDFType).eq."netcdf4") then

setfileoption("nc","Format","netcdf4") nc_file_type = "netcdf4"

else

nc_file_type = "netcdf3"

end if print(nc_file_type)

end ; of curvilinear_to_SCRIP(...) begin

Opt = True curvilinear_to_SCRIP(Opt) Opt@NetCDFType = "netcdf4" curvilinear_to_SCRIP(Opt) Opt@NetCDFType = "netcdf3" curvilinear_to_SCRIP(Opt)

end

bash-3.2#

comment:7 Changed 2 years ago by Dave-Allured (Dave Allured)

Cc: Dave-Allured added
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