Opened 7 years ago

Closed 7 years ago

#54759 closed defect (fixed)

bedtools @2.26.0 build error

Reported by: ikizhvatov (Ilya Kizhvatov) Owned by: arjanvandervelde (Arjan van der Velde)
Priority: Normal Milestone:
Component: ports Version:
Keywords: Cc:
Port: bedtools

Description 

sudo port install bedtools

fails on macOS Sierra 10.12.6. Log attached.

Attachments (3)

main.log​ (177.6 KB) - added by ikizhvatov (Ilya Kizhvatov) 7 years ago.
Log file
sphinx-err-4RllEW.log​ (1016 bytes) - added by ikizhvatov (Ilya Kizhvatov) 7 years ago.
Sphinx error log
patch-docs-conf.py.diff​ (1.1 KB) - added by arjanvandervelde (Arjan van der Velde) 7 years ago.
patch for docs/conf.py

Download all attachments as: .zip

Change History (8)

Changed 7 years ago by ikizhvatov (Ilya Kizhvatov)

Attachment: main.log​ added

Log file

Changed 7 years ago by ikizhvatov (Ilya Kizhvatov)

Attachment: sphinx-err-4RllEW.log​ added

Sphinx error log

comment:1 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)

I’ve created a pull request for this.

​https://github.com/arq5x/bedtools2/pull/566

— Arjan

comment:2 Changed 7 years ago by mf2k (Frank Schima)

Cc: vandervelde.ag@… removed
Owner: set to arjanvandervelde
Status: new → assigned

Changed 7 years ago by arjanvandervelde (Arjan van der Velde)

Attachment: patch-docs-conf.py.diff​ added

patch for docs/conf.py

comment:3 in reply to:  2 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)

Replying to mf2k:

Hi Frank. Would you be able to add the patch to the port? Thanks!

-- Arjan

comment:4 Changed 7 years ago by arjanvandervelde (Arjan van der Velde)

nevermind :) i'm submitting a pull request for this port.

​https://github.com/macports/macports-ports/pull/751

comment:5 Changed 7 years ago by mf2k (Frank Schima)

Resolution: → fixed
Status: assigned → closed

changeset:35d2e8cc27fc2e06f15321316588c4379499b785/macports-ports

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