Opened 22 months ago

Last modified 22 months ago

#57466 assigned defect

upgrade outdated always rebuilds on hdfeos5

Reported by: basmac Owned by: tenomoto (Takeshi Enomoto)
Priority: Normal Milestone:
Component: ports Version: 2.5.4
Keywords: Cc: Dave-Allured (Dave Allured)
Port: hdfeos5

Description (last modified by mf2k (Frank Schima))

Hi, building on clean Mojave, I regularly do a port self update and upgrade outdated. Every time I get broken port hdfeos5, even though it has been rebuilt multiple times. It does not affect the build, just annoying here is the example this morning -

bash-3.2# port selfupdate
--->  Updating MacPorts base sources using rsync
MacPorts base version 2.5.4 installed,
MacPorts base version 2.5.4 downloaded.
--->  Updating the ports tree
--->  MacPorts base is already the latest version

The ports tree has been updated. To upgrade your installed ports, you should run
  port upgrade outdated
bash-3.2# port list outdated
Warning: The 'list' action only shows the currently available version of each port. To see installed versions, use the 'installed' action.
gstreamer1-gst-plugins-base    @1.14.4         gnome/gstreamer1-gst-plugins-base
libgcrypt                      @1.8.4          devel/libgcrypt
py-matplotlib                  @3.0.1          python/py-matplotlib
SuiteSparse_AMD                @2.4.6          math/SuiteSparse
SuiteSparse_BTF                @1.2.6          math/SuiteSparse
SuiteSparse_CAMD               @2.4.6          math/SuiteSparse
SuiteSparse_CCOLAMD            @2.9.6          math/SuiteSparse
SuiteSparse_CHOLMOD            @3.0.12         math/SuiteSparse
SuiteSparse_COLAMD             @2.9.6          math/SuiteSparse
SuiteSparse_config             @5.3.0          math/SuiteSparse
SuiteSparse_CSparse            @5.3.0          math/SuiteSparse
SuiteSparse_CXSparse           @3.2.0          math/SuiteSparse
SuiteSparse_GraphBLAS          @2.0.3          math/SuiteSparse
SuiteSparse_KLU                @1.3.8          math/SuiteSparse
SuiteSparse_LDL                @2.2.6          math/SuiteSparse
SuiteSparse_Mongoose           @2.0.2          math/SuiteSparse
SuiteSparse_RBio               @2.2.6          math/SuiteSparse
SuiteSparse_SPQR               @2.0.8          math/SuiteSparse
SuiteSparse_UMFPACK            @5.7.7          math/SuiteSparse
bash-3.2# port upgrade outdated
--->  Computing dependencies for gstreamer1-gst-plugins-base
--->  Fetching archive for gstreamer1-gst-plugins-base
--->  Attempting to fetch gstreamer1-gst-plugins-base-1.14.4_1+ogg+x11.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/gstreamer1-gst-plugins-base
--->  Attempting to fetch gstreamer1-gst-plugins-base-1.14.4_1+ogg+x11.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/gstreamer1-gst-plugins-base
--->  Installing gstreamer1-gst-plugins-base @1.14.4_1+ogg+x11
--->  Cleaning gstreamer1-gst-plugins-base
--->  Computing dependencies for gstreamer1-gst-plugins-base
--->  Deactivating gstreamer1-gst-plugins-base @1.14.4_0+ogg+x11
--->  Cleaning gstreamer1-gst-plugins-base
--->  Activating gstreamer1-gst-plugins-base @1.14.4_1+ogg+x11
--->  Cleaning gstreamer1-gst-plugins-base
--->  Computing dependencies for libgcrypt
--->  Fetching archive for libgcrypt
--->  Attempting to fetch libgcrypt-1.8.4_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/libgcrypt
--->  Attempting to fetch libgcrypt-1.8.4_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/libgcrypt
--->  Installing libgcrypt @1.8.4_0
--->  Cleaning libgcrypt
--->  Computing dependencies for libgcrypt
--->  Deactivating libgcrypt @1.8.3_0
--->  Cleaning libgcrypt
--->  Activating libgcrypt @1.8.4_0
--->  Cleaning libgcrypt
--->  Computing dependencies for py-matplotlib
--->  Fetching archive for py-matplotlib
--->  Attempting to fetch py-matplotlib-3.0.1_0.darwin_18.noarch.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/py-matplotlib
--->  Attempting to fetch py-matplotlib-3.0.1_0.darwin_18.noarch.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/py-matplotlib
--->  Installing py-matplotlib @3.0.1_0
--->  Cleaning py-matplotlib
--->  Computing dependencies for py-matplotlib
--->  Deactivating py-matplotlib @3.0.0_0
--->  Cleaning py-matplotlib
--->  Activating py-matplotlib @3.0.1_0
--->  Cleaning py-matplotlib
--->  Fetching archive for SuiteSparse_config
--->  Attempting to fetch SuiteSparse_config-5.3.0_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_config
--->  Attempting to fetch SuiteSparse_config-5.3.0_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_config
--->  Installing SuiteSparse_config @5.3.0_0
--->  Cleaning SuiteSparse_config
--->  Deactivating SuiteSparse_config @7.0_0
--->  Cleaning SuiteSparse_config
--->  Activating SuiteSparse_config @5.3.0_0
--->  Cleaning SuiteSparse_config
--->  Computing dependencies for SuiteSparse_AMD
--->  Fetching archive for SuiteSparse_AMD
--->  Attempting to fetch SuiteSparse_AMD-2.4.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_AMD
--->  Attempting to fetch SuiteSparse_AMD-2.4.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_AMD
--->  Installing SuiteSparse_AMD @2.4.6_0
--->  Cleaning SuiteSparse_AMD
--->  Computing dependencies for SuiteSparse_AMD
--->  Deactivating SuiteSparse_AMD @7.0_0
--->  Cleaning SuiteSparse_AMD
--->  Activating SuiteSparse_AMD @2.4.6_0
--->  Cleaning SuiteSparse_AMD
--->  Computing dependencies for SuiteSparse_BTF
--->  Fetching archive for SuiteSparse_BTF
--->  Attempting to fetch SuiteSparse_BTF-1.2.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_BTF
--->  Attempting to fetch SuiteSparse_BTF-1.2.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_BTF
--->  Installing SuiteSparse_BTF @1.2.6_0
--->  Cleaning SuiteSparse_BTF
--->  Computing dependencies for SuiteSparse_BTF
--->  Deactivating SuiteSparse_BTF @7.0_0
--->  Cleaning SuiteSparse_BTF
--->  Activating SuiteSparse_BTF @1.2.6_0
--->  Cleaning SuiteSparse_BTF
--->  Computing dependencies for SuiteSparse_CAMD
--->  Fetching archive for SuiteSparse_CAMD
--->  Attempting to fetch SuiteSparse_CAMD-2.4.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CAMD
--->  Attempting to fetch SuiteSparse_CAMD-2.4.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CAMD
--->  Installing SuiteSparse_CAMD @2.4.6_0
--->  Cleaning SuiteSparse_CAMD
--->  Computing dependencies for SuiteSparse_CAMD
--->  Deactivating SuiteSparse_CAMD @7.0_0
--->  Cleaning SuiteSparse_CAMD
--->  Activating SuiteSparse_CAMD @2.4.6_0
--->  Cleaning SuiteSparse_CAMD
--->  Computing dependencies for SuiteSparse_CCOLAMD
--->  Fetching archive for SuiteSparse_CCOLAMD
--->  Attempting to fetch SuiteSparse_CCOLAMD-2.9.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CCOLAMD
--->  Attempting to fetch SuiteSparse_CCOLAMD-2.9.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CCOLAMD
--->  Installing SuiteSparse_CCOLAMD @2.9.6_0
--->  Cleaning SuiteSparse_CCOLAMD
--->  Computing dependencies for SuiteSparse_CCOLAMD
--->  Deactivating SuiteSparse_CCOLAMD @7.0_0
--->  Cleaning SuiteSparse_CCOLAMD
--->  Activating SuiteSparse_CCOLAMD @2.9.6_0
--->  Cleaning SuiteSparse_CCOLAMD
--->  Computing dependencies for SuiteSparse_COLAMD
--->  Fetching archive for SuiteSparse_COLAMD
--->  Attempting to fetch SuiteSparse_COLAMD-2.9.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_COLAMD
--->  Attempting to fetch SuiteSparse_COLAMD-2.9.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_COLAMD
--->  Installing SuiteSparse_COLAMD @2.9.6_0
--->  Cleaning SuiteSparse_COLAMD
--->  Computing dependencies for SuiteSparse_COLAMD
--->  Deactivating SuiteSparse_COLAMD @7.0_0
--->  Cleaning SuiteSparse_COLAMD
--->  Activating SuiteSparse_COLAMD @2.9.6_0
--->  Cleaning SuiteSparse_COLAMD
--->  Computing dependencies for SuiteSparse_CHOLMOD
--->  Fetching archive for SuiteSparse_CHOLMOD
--->  Attempting to fetch SuiteSparse_CHOLMOD-3.0.12_0+accelerate.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CHOLMOD
--->  Attempting to fetch SuiteSparse_CHOLMOD-3.0.12_0+accelerate.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CHOLMOD
--->  Installing SuiteSparse_CHOLMOD @3.0.12_0+accelerate
--->  Cleaning SuiteSparse_CHOLMOD
--->  Computing dependencies for SuiteSparse_CHOLMOD
--->  Deactivating SuiteSparse_CHOLMOD @7.0_0+accelerate
--->  Cleaning SuiteSparse_CHOLMOD
--->  Activating SuiteSparse_CHOLMOD @3.0.12_0+accelerate
--->  Cleaning SuiteSparse_CHOLMOD
--->  Fetching archive for SuiteSparse_CSparse
--->  Attempting to fetch SuiteSparse_CSparse-5.3.0_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CSparse
--->  Attempting to fetch SuiteSparse_CSparse-5.3.0_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CSparse
--->  Installing SuiteSparse_CSparse @5.3.0_0
--->  Cleaning SuiteSparse_CSparse
--->  Deactivating SuiteSparse_CSparse @7.0_0
--->  Cleaning SuiteSparse_CSparse
--->  Activating SuiteSparse_CSparse @5.3.0_0
--->  Cleaning SuiteSparse_CSparse
--->  Computing dependencies for SuiteSparse_CXSparse
--->  Fetching archive for SuiteSparse_CXSparse
--->  Attempting to fetch SuiteSparse_CXSparse-3.2.0_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CXSparse
--->  Attempting to fetch SuiteSparse_CXSparse-3.2.0_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_CXSparse
--->  Installing SuiteSparse_CXSparse @3.2.0_0
--->  Cleaning SuiteSparse_CXSparse
--->  Computing dependencies for SuiteSparse_CXSparse
--->  Deactivating SuiteSparse_CXSparse @7.0_0
--->  Cleaning SuiteSparse_CXSparse
--->  Activating SuiteSparse_CXSparse @3.2.0_0
--->  Cleaning SuiteSparse_CXSparse
--->  Fetching archive for SuiteSparse_GraphBLAS
--->  Attempting to fetch SuiteSparse_GraphBLAS-2.0.3_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_GraphBLAS
--->  Attempting to fetch SuiteSparse_GraphBLAS-2.0.3_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_GraphBLAS
--->  Installing SuiteSparse_GraphBLAS @2.0.3_0
--->  Cleaning SuiteSparse_GraphBLAS
--->  Deactivating SuiteSparse_GraphBLAS @7.0_0
--->  Cleaning SuiteSparse_GraphBLAS
--->  Activating SuiteSparse_GraphBLAS @2.0.3_0
--->  Cleaning SuiteSparse_GraphBLAS
--->  Computing dependencies for SuiteSparse_KLU
--->  Fetching archive for SuiteSparse_KLU
--->  Attempting to fetch SuiteSparse_KLU-1.3.8_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_KLU
--->  Attempting to fetch SuiteSparse_KLU-1.3.8_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_KLU
--->  Installing SuiteSparse_KLU @1.3.8_0
--->  Cleaning SuiteSparse_KLU
--->  Computing dependencies for SuiteSparse_KLU
--->  Deactivating SuiteSparse_KLU @7.0_0
--->  Cleaning SuiteSparse_KLU
--->  Activating SuiteSparse_KLU @1.3.8_0
--->  Cleaning SuiteSparse_KLU
--->  Computing dependencies for SuiteSparse_LDL
--->  Fetching archive for SuiteSparse_LDL
--->  Attempting to fetch SuiteSparse_LDL-2.2.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_LDL
--->  Attempting to fetch SuiteSparse_LDL-2.2.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_LDL
--->  Installing SuiteSparse_LDL @2.2.6_0
--->  Cleaning SuiteSparse_LDL
--->  Computing dependencies for SuiteSparse_LDL
--->  Deactivating SuiteSparse_LDL @7.0_0
--->  Cleaning SuiteSparse_LDL
--->  Activating SuiteSparse_LDL @2.2.6_0
--->  Cleaning SuiteSparse_LDL
--->  Computing dependencies for SuiteSparse_Mongoose
--->  Fetching archive for SuiteSparse_Mongoose
--->  Attempting to fetch SuiteSparse_Mongoose-2.0.2_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_Mongoose
--->  Attempting to fetch SuiteSparse_Mongoose-2.0.2_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_Mongoose
--->  Installing SuiteSparse_Mongoose @2.0.2_0
--->  Cleaning SuiteSparse_Mongoose
--->  Computing dependencies for SuiteSparse_Mongoose
--->  Deactivating SuiteSparse_Mongoose @7.0_0
--->  Cleaning SuiteSparse_Mongoose
--->  Activating SuiteSparse_Mongoose @2.0.2_0
--->  Cleaning SuiteSparse_Mongoose
--->  Computing dependencies for SuiteSparse_RBio
--->  Fetching archive for SuiteSparse_RBio
--->  Attempting to fetch SuiteSparse_RBio-2.2.6_0.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_RBio
--->  Attempting to fetch SuiteSparse_RBio-2.2.6_0.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_RBio
--->  Installing SuiteSparse_RBio @2.2.6_0
--->  Cleaning SuiteSparse_RBio
--->  Computing dependencies for SuiteSparse_RBio
--->  Deactivating SuiteSparse_RBio @7.0_0
--->  Cleaning SuiteSparse_RBio
--->  Activating SuiteSparse_RBio @2.2.6_0
--->  Cleaning SuiteSparse_RBio
--->  Computing dependencies for SuiteSparse_SPQR
--->  Fetching archive for SuiteSparse_SPQR
--->  Attempting to fetch SuiteSparse_SPQR-2.0.8_0+accelerate.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_SPQR
--->  Attempting to fetch SuiteSparse_SPQR-2.0.8_0+accelerate.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_SPQR
--->  Installing SuiteSparse_SPQR @2.0.8_0+accelerate
--->  Cleaning SuiteSparse_SPQR
--->  Computing dependencies for SuiteSparse_SPQR
--->  Deactivating SuiteSparse_SPQR @7.0_0+accelerate
--->  Cleaning SuiteSparse_SPQR
--->  Activating SuiteSparse_SPQR @2.0.8_0+accelerate
--->  Cleaning SuiteSparse_SPQR
--->  Computing dependencies for SuiteSparse_UMFPACK
--->  Fetching archive for SuiteSparse_UMFPACK
--->  Attempting to fetch SuiteSparse_UMFPACK-5.7.7_0+accelerate.darwin_18.x86_64.tbz2 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_UMFPACK
--->  Attempting to fetch SuiteSparse_UMFPACK-5.7.7_0+accelerate.darwin_18.x86_64.tbz2.rmd160 from http://ywg.ca.packages.macports.org/mirror/macports/packages/SuiteSparse_UMFPACK
--->  Installing SuiteSparse_UMFPACK @5.7.7_0+accelerate
--->  Cleaning SuiteSparse_UMFPACK
--->  Computing dependencies for SuiteSparse_UMFPACK
--->  Deactivating SuiteSparse_UMFPACK @7.0_0+accelerate
--->  Cleaning SuiteSparse_UMFPACK
--->  Activating SuiteSparse_UMFPACK @5.7.7_0+accelerate
--->  Cleaning SuiteSparse_UMFPACK
--->  Scanning binaries for linking errors
--->  Found 2 broken files, matching files to ports
--->  Found 1 broken port, determining rebuild order
You can always run 'port rev-upgrade' again to fix errors.
The following ports will be rebuilt: hdfeos5 @1.16
Continue? [Y/n]: y
--->  Computing dependencies for hdfeos5
--->  Cleaning hdfeos5
--->  Scanning binaries for linking errors
--->  Found 2 broken files, matching files to ports
--->  Found 1 broken port, determining rebuild order
--->  Rebuilding in order
     hdfeos5 @1.16
--->  Computing dependencies for hdfeos5
--->  Fetching distfiles for hdfeos5
--->  Attempting to fetch HDF-EOS5.1.16.tar.Z from http://ywg.ca.distfiles.macports.org/mirror/macports/distfiles/hdfeos5
--->  Verifying checksums for hdfeos5
--->  Extracting hdfeos5
--->  Configuring hdfeos5
--->  Building hdfeos5
--->  Staging hdfeos5 into destroot
--->  Unable to uninstall hdfeos5 @1.16_0, the following ports depend on it:
--->  	ncarg @6.5.0_2+accelerate+gcc7
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating hdfeos5 @1.16_0
--->  Cleaning hdfeos5
--->  Uninstalling hdfeos5 @1.16_0
--->  Cleaning hdfeos5
--->  Computing dependencies for hdfeos5
--->  Installing hdfeos5 @1.16_0
--->  Activating hdfeos5 @1.16_0
--->  Cleaning hdfeos5
--->  Scanning binaries for linking errors
--->  No broken files found.
--->  No broken ports found.
bash-3.2# port rev-upgrade
--->  Scanning binaries for linking errors
--->  No broken files found.
--->  No broken ports found.
bash-3.2#

Change History (3)

comment:1 Changed 22 months ago by mf2k (Frank Schima)

Keywords: upgrade hdfeos5 removed
Owner: set to tenomoto
Status: newassigned

comment:2 Changed 22 months ago by mf2k (Frank Schima)

Description: modified (diff)

comment:3 Changed 22 months ago by Dave-Allured (Dave Allured)

Cc: Dave-Allured added
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