Opened 5 years ago
Closed 5 years ago
#57699 closed defect (fixed)
py-astropy: segfault in astropy.wcs.WCS
| Reported by: | lpsinger (Leo Singer) | Owned by: | robitaille |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | |
| Keywords: | Cc: | ||
| Port: | py-astropy |
Description
I get a segmentation fault when attempting to read almost any WCS header. Here's an example using one of the test files from the astropy/wcs/tests/data.
$ python -c 'from astropy.io import fits; from astropy import wcs; wcs.WCS(fits.open("j94f05bgq_flt.fits")[0])'
WARNING: FITSFixedWarning: The WCS transformation has more axes (2) than the image it is associated with (0) [astropy.wcs.wcs]
Segmentation fault: 11
I am using Python 3.7 on macOS 10.14.1, py37-astropy @3.0.5_0, and wcslib @6.2_0.
Change History (4)
comment:1 Changed 5 years ago by lpsinger (Leo Singer)
comment:2 Changed 5 years ago by lpsinger (Leo Singer)
| Owner: | set to robitaille |
|---|---|
| Status: | new → assigned |
comment:3 Changed 5 years ago by lpsinger (Leo Singer)
A similar segfault is reported in https://github.com/astropy/astropy/issues/7929.
comment:4 Changed 5 years ago by lpsinger (Leo Singer)
| Resolution: | → fixed |
|---|---|
| Status: | assigned → closed |
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Here's the stack trace:
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystem_platform.dylib 0x00007fff7c8f5712 _platform_strlen + 18 1 org.python.python 0x000000010611c089 PyUnicode_FromString + 14 2 org.python.python 0x00000001060f8ab4 PyDict_SetItemString + 24 3 _wcs.cpython-37m-darwin.so 0x000000010915b344 PyWcsprm_fix + 1300 4 org.python.python 0x00000001060d6b88 _PyMethodDef_RawFastCallKeywords + 545 5 org.python.python 0x00000001060db4f2 _PyMethodDescr_FastCallKeywords + 82 6 org.python.python 0x000000010616c02c call_function + 801 7 org.python.python 0x00000001061646a8 _PyEval_EvalFrameDefault + 4751 8 org.python.python 0x000000010616c88e _PyEval_EvalCodeWithName + 1835 9 org.python.python 0x00000001060d60b8 _PyFunction_FastCallKeywords + 225 10 org.python.python 0x000000010616bffc call_function + 753 11 org.python.python 0x00000001061647d6 _PyEval_EvalFrameDefault + 5053 12 org.python.python 0x000000010616c88e _PyEval_EvalCodeWithName + 1835 13 org.python.python 0x00000001060d5d21 _PyFunction_FastCallDict + 441 14 org.python.python 0x00000001060d6e51 _PyObject_Call_Prepend + 150 15 org.python.python 0x0000000106114798 slot_tp_init + 80 16 org.python.python 0x0000000106111464 type_call + 178 17 org.python.python 0x00000001060d5f59 _PyObject_FastCallKeywords + 359 18 org.python.python 0x000000010616bff5 call_function + 746 19 org.python.python 0x00000001061646c1 _PyEval_EvalFrameDefault + 4776 20 org.python.python 0x000000010616c88e _PyEval_EvalCodeWithName + 1835 21 org.python.python 0x0000000106163391 PyEval_EvalCode + 42 22 org.python.python 0x0000000106191b15 run_mod + 54 23 org.python.python 0x0000000106190c5b PyRun_StringFlags + 120 24 org.python.python 0x0000000106190bb2 PyRun_SimpleStringFlags + 69 25 org.python.python 0x00000001061a78ed pymain_main + 4134 26 org.python.python 0x00000001061a850b _Py_UnixMain + 75 27 libdyld.dylib 0x00007fff7c70f08d start + 1 Thread 0 crashed with X86 Thread State (64-bit): rax: 0x000000010a2257b0 rbx: 0x0000000000000000 rcx: 0x0000000000000000 rdx: 0x0000000000000000 rdi: 0x0000000000000000 rsi: 0x0000000000000000 rbp: 0x00007ffee9b4a650 rsp: 0x00007ffee9b4a650 r8: 0x65676e616863206f r9: 0x000000000000000f r10: 0x0000000106698cd8 r11: 0x00000000010c425f r12: 0x00007fc5d5962410 r13: 0x0000000109119808 r14: 0x000000010a2257b0 r15: 0x000000010932b2d0 rip: 0x00007fff7c8f5712 rfl: 0x0000000000010246 cr2: 0x0000000000000000 Logical CPU: 0 Error Code: 0x00000004 Trap Number: 14 Binary Images: 0x1060b4000 - 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