Opened 5 years ago

Closed 5 years ago

Last modified 5 years ago

#57764 closed defect (fixed)

Installing Bowtie2

Reported by: buzbarstow Owned by: gaberoo@…
Priority: Normal Milestone:
Component: ports Version:
Keywords: Cc: buzbarstow, MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)
Port: bowtie2

Description (last modified by jmroot (Joshua Root))

Hi ports,

I'm having trouble installing Bowtie2 on my Mac (OSX 10.14.1). I'm getting the error: 

Error: Failed to build bowtie2: command execution failed
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bowtie2/bowtie2/main.log for details.
Error: Follow https://guide.macports.org/#project.tickets to report a bug.
Error: Processing of port bowtie2 failed

All the best, and many thanks,

-Buz

Attachments (1)

main.log​ (70.3 KB) - added by emilioxavier (Emilio Xavier Esposito) 5 years ago.

Download all attachments as: .zip

Change History (5)

comment:1 Changed 5 years ago by jmroot (Joshua Root)

Description: modified (diff)
Owner: set to gaberoo@…
Port: bowtie2 added
Status: new → assigned

Please attach the main.log mentioned in the error message.

Changed 5 years ago by emilioxavier (Emilio Xavier Esposito)

Attachment: main.log​ added

comment:2 Changed 5 years ago by emilioxavier (Emilio Xavier Esposito)

Hi
I have the same type of error for the installation of bowtie2 on macOS 10.14.2. 

Error: Failed to build bowtie2: command execution failed
Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bowtie2/bowtie2/main.log for details.
Error: Follow https://guide.macports.org/#project.tickets to report a bug.
Error: Processing of port bowtie2 failed

I have uploaded the main.log file for the 10.14.2 install error. Please let me know if you need additional information.

Thank you
Emilio

comment:3 Changed 5 years ago by MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)

Resolution: → fixed
Status: assigned → closed

In a7089906d5fb76f38822761c47a4a135f11e49fc/macports-ports (master):

bowtie2: avoid comparing pointer and int with >

Fixes #57764
No revbump since port either builds correctly or not at all.

comment:4 Changed 5 years ago by MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)

Cc: MarcusCalhoun-Lopez added
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