Opened 5 years ago

Closed 4 years ago

#59250 closed defect (fixed)

OpenBLAS 0.3.7_0 build failed on Catalina

Reported by: eldams (Damien Nouvel) Owned by: NicosPavlov
Priority: Normal Milestone:
Component: ports Version: 2.6.1
Keywords: Cc: eldams (Damien Nouvel), michaelld (Michael Dickens), hapaguy (Brian Kurt Fujikawa), MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)
Port: OpenBLAS

Description (last modified by eldams (Damien Nouvel))

The OpenBLAS build failed :
Error: Failed to build OpenBLAS: command execution failed
Looks like something is wrong with utests kernel_regress...
Segmentation fault 11
See atached logs

Attachments (3)

main.log​ (2.9 MB) - added by eldams (Damien Nouvel) 5 years ago.
main
make.log​ (152.2 KB) - added by eldams (Damien Nouvel) 5 years ago.
make build log error
main.2.log​ (2.9 MB) - added by hapaguy (Brian Kurt Fujikawa) 4 years ago.
New main.log from hapaguy (Brian Kurt Fujikawa)

Change History (16)

Changed 5 years ago by eldams (Damien Nouvel)

Attachment: main.log​ added

main

Changed 5 years ago by eldams (Damien Nouvel)

Attachment: make.log​ added

make build log error

comment:1 Changed 5 years ago by eldams (Damien Nouvel)

Cc: eldams added

comment:2 Changed 5 years ago by eldams (Damien Nouvel)

Description: modified (diff)

comment:3 Changed 5 years ago by jmroot (Joshua Root)

Cc: michaelld added
Milestone: MacPorts 2.7.0
Port: OpenBLAS added

comment:4 Changed 5 years ago by jmroot (Joshua Root)

May be a duplicate of #59248.

comment:5 Changed 5 years ago by eldams (Damien Nouvel)

it now compiles
thanks guys :) !

comment:6 Changed 5 years ago by cjones051073 (Chris Jones)

Resolution: → fixed
Status: assigned → closed

comment:7 Changed 4 years ago by hapaguy (Brian Kurt Fujikawa)

I am running macOS 10.15.1 and using Xcode 11.2. I tried to build OpenBLAS @0.3.7 with 

$ sudo port -sv install OpenBLAS +gcc9 +lapack

The build fails due to a segfault: 

:info:build OPENBLAS_NUM_THREADS=1 OMP_NUM_THREADS=1 ./sblat2 < ./sblat2.dat
:info:build Program received signal SIGSEGV: Segmentation fault - invalid memory reference.
:info:build Backtrace for this error:
:info:build #0  0x10da65564
:info:build #1  0x10da64c86
:info:build #2  0x7fff6dc39b1c
:info:build /bin/sh: line 1: 70219 Segmentation fault: 11  OPENBLAS_NUM_THREADS=1 OMP_NUM_THREADS=1 ./sblat2 < ./sblat2.dat
:info:build make[1]: *** [level2] Error 139
:info:build make[1]: *** Waiting for unfinished jobs....

(please see attached main.log). This segfault error is similar to that reported above.

I was able to successfully build OpenBLAS @0.3.7 on another Mac - the only difference (in addition to the order of installing other ports) is that I was running Xcode 11.1.

Changed 4 years ago by hapaguy (Brian Kurt Fujikawa)

Attachment: main.2.log​ added

New main.log from hapaguy (Brian Kurt Fujikawa)

comment:8 Changed 4 years ago by hapaguy (Brian Kurt Fujikawa)

Resolution: fixed
Status: closed → reopened

comment:9 Changed 4 years ago by hapaguy (Brian Kurt Fujikawa)

Cc: hapaguy added

comment:10 Changed 4 years ago by MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)

Cc: MarcusCalhoun-Lopez added

comment:11 Changed 4 years ago by MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)

The error is likely due to the fact that, while the error was fixed in Xcode 11.2, the port is not actually using Xcode.
It is using the command line tools, which still has the bug.
A recent ​pull request gets around this by using Xcode instead of the command line tools.
Once the pull request is merged, the problem should go away again.

comment:12 Changed 4 years ago by hapaguy (Brian Kurt Fujikawa)

Thanks, Apple released command line tools 11.2 today, and that appears to fix the OpenBLAS segfault issue - I can successfully build OpenBLAS @0.3.7 now.

comment:13 Changed 4 years ago by MarcusCalhoun-Lopez (Marcus Calhoun-Lopez)

Resolution: → fixed
Status: reopened → closed

This problem should be ​fixed again.

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