id,summary,reporter,owner,description,type,status,priority,milestone,component,version,resolution,keywords,cc,port 59895,atlas: xatlas_build segfaults,nolaaa,Veence,"I am trying to install an Astronomical package (source-extractor) which requires atlas to be pre-installed. I am running MacPorts 2.6.2 , Xcode 11.3, and gcc9. However, I keep getting an error that atlas fails to build. I also tried sudo port clean atlas but still get the same error. Here is the log of what I am doing: {{{ sudo port install source-extractor ---> Computing dependencies for source-extractor The following dependencies will be installed: atlas autoconf automake fftw-3 fftw-3-single libtool Continue? [Y/n]: ---> Fetching archive for atlas ---> Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from https://packages.macports.org/atlas ---> Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from http://aus.us.packages.macports.org/macports/packages/atlas ---> Attempting to fetch atlas-3.10.2_2.darwin_19.x86_64.tbz2 from http://kmq.jp.packages.macports.org/atlas ---> Fetching distfiles for atlas ---> Verifying checksums for atlas ---> Extracting atlas ---> Applying patches to atlas ---> Configuring atlas Selected C compiler: /usr/bin/clang Selected F77 compiler: gfortran9 Warning: reinplace s|-no-cpp-precomp||g didn't change anything in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/CONFIG/src/atlcomp.txt ---> Building atlas Error: Failed to build atlas: command execution failed Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log for details. Error: Follow https://guide.macports.org/#project.tickets to report a bug. Error: Processing of port source-extractor failed }}} Also here is the full report of this error in my /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.logfile: {{{ :debug:build build phase started at Fri Dec 27 13:51:19 PST 2019 :notice:build ---> Building atlas :debug:build Executing org.macports.build (atlas) :debug:build port disallows a parallel build :debug:build Environment: :debug:build CC='/usr/bin/clang' :debug:build CC_PRINT_OPTIONS='YES' :debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS' :debug:build CPATH='/opt/local/include' :debug:build CXX='/usr/bin/clang++' :debug:build DEVELOPER_DIR='/Library/Developer/CommandLineTools' :debug:build LIBRARY_PATH='/opt/local/lib' :debug:build MACOSX_DEPLOYMENT_TARGET='10.15' :debug:build SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk' :info:build Executing: cd ""/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"" && /usr/bin/make -w build :debug:build system: cd ""/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"" && /usr/bin/make -w build :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build /Library/Developer/CommandLineTools/usr/bin/make -f Make.top build :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build cd bin/ ; /Library/Developer/CommandLineTools/usr/bin/make xatlas_build :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_tee.c :info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma -o xatlas_tee atlas_tee.o :info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c :info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:38: :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] :info:build while (ln = GetJoinedLines(fpin)) :info:build ~~~^~~~~~~~~~~~~~~~~~~~~~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14: note: place parentheses around the assignment to silence this warning :info:build while (ln = GetJoinedLines(fpin)) :info:build ^ :info:build ( ) :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_r1parse.h:879:14: note: use '==' to turn this assignment into an equality comparison :info:build while (ln = GetJoinedLines(fpin)) :info:build ^ :info:build == :info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:39: :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] :info:build while (ln = GetJoinedLines(fpin)) :info:build ~~~^~~~~~~~~~~~~~~~~~~~~~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14: note: place parentheses around the assignment to silence this warning :info:build while (ln = GetJoinedLines(fpin)) :info:build ^ :info:build ( ) :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mvparse.h:914:14: note: use '==' to turn this assignment into an equality comparison :info:build while (ln = GetJoinedLines(fpin)) :info:build ^ :info:build == :info:build In file included from /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:40: :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] :info:build while (ln = GetJoinedLines(fpin)) :info:build ~~~^~~~~~~~~~~~~~~~~~~~~~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14: note: place parentheses around the assignment to silence this warning :info:build while (ln = GetJoinedLines(fpin)) :info:build ^ :info:build ( ) :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/atlas_mmparse.h:1011:14: note: use '==' to turn this assignment into an equality comparison :info:build while (ln = GetJoinedLines(fpin)) :info:build ^ :info:build == :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] :info:build for (i=0; str0[i] = str[i]; i++); :info:build ~~~~~~~~^~~~~~~~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22: note: place parentheses around the assignment to silence this warning :info:build for (i=0; str0[i] = str[i]; i++); :info:build ^ :info:build ( ) :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:148:22: note: use '==' to turn this assignment into an equality comparison :info:build for (i=0; str0[i] = str[i]; i++); :info:build ^ :info:build == :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:267:25: warning: length modifier 'L' results in undefined behavior or no effect with 'd' conversion specifier [-Wformat] :info:build sscanf(ln+i, ""%Ld"", &iret); :info:build ~^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:267:25: note: did you mean to use 'll'? :info:build sscanf(ln+i, ""%Ld"", &iret); :info:build ^ :info:build ll :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:281:30: warning: format specifies type 'unsigned long *' but the argument has type 'long long *' [-Wformat] :info:build sscanf(ln+i, ""%lx"", &iret); :info:build ~~~ ^~~~~ :info:build %llx :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:486:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(fp0, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:486:20: note: treat the string as an argument to avoid this :info:build fprintf(fp0, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:488:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(fp1, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:488:20: note: treat the string as an argument to avoid this :info:build fprintf(fp1, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:684:16: warning: 'tmpnam' is deprecated: This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tmpnam(3), it is highly recommended that you use mkstemp(3) instead. [-Wdeprecated-declarations] :info:build ATL_Cassert(tmpnam(tnam), ""GETTING TEMPFILE"", NULL); :info:build ^ :info:build /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/stdio.h:186:1: note: 'tmpnam' has been explicitly marked deprecated here :info:build __deprecated_msg(""This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tmpnam(3), it is highly recommended that you use mkstemp(3) instead."") :info:build ^ :info:build /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/sys/cdefs.h:191:48: note: expanded from macro '__deprecated_msg' :info:build #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg))) :info:build ^ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:779:29: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:779:29: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:783:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:783:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:839:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:839:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:857:32: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:857:32: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:884:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:884:23: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:899:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:899:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:925:29: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:925:29: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:958:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:958:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:973:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:973:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:979:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:979:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:983:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:983:23: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:996:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:996:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1029:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1029:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1064:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1064:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1102:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1102:20: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1113:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1113:20: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1124:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1124:20: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1132:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1132:20: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1147:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1147:26: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1165:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1165:20: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1175:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security] :info:build fprintf(stdout, ln); :info:build ^~ :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//bin/atlas_install.c:1175:20: note: treat the string as an argument to avoid this :info:build fprintf(stdout, ln); :info:build ^ :info:build ""%s"", :info:build 30 warnings generated. :info:build /usr/bin/clang -DL2SIZE=4194304 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//include/contrib -DAdd_ -DF77_INTEGER=int -DStringSunStyle -DATL_OS_OSX -DATL_ARCH_Corei3 -DATL_CPUMHZ=2900 -DATL_AVXMAC -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_USE64BITS -DATL_GAS_x8664 -DATL_DYLIBS -DPentiumCPS=2900 -DATL_FULL_LAPACK -DATL_NCPU=4 -O3 -fomit-frame-pointer -fPIC -march=native -mfma -o xatlas_build atlas_install.o :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1 :info:build /bin/sh: line 1: 66976 Segmentation fault: 11 ./xatlas_build -1 0 -a 1 -l 1 :info:build make[1]: *** [build] Error 139 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build make: *** [build] Error 2 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build Command failed: cd ""/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build"" && /usr/bin/make -w build :info:build Exit code: 2 :error:build Failed to build atlas: command execution failed :debug:build Error code: CHILDSTATUS 66962 2 :debug:build Backtrace: command execution failed :debug:build while executing :debug:build ""system {*}$notty {*}$nice $fullcmdstring"" :debug:build invoked from within :debug:build ""command_exec build"" :debug:build (procedure ""portbuild::build_main"" line 8) :debug:build invoked from within :debug:build ""$procedure $targetname"" :error:build See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_atlas/atlas/main.log for details. }}} ",defect,closed,Normal,,ports,2.6.2,duplicate,,,atlas