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#73424 reopened defect

py312-numpy "Illegal instruction"

Reported by:	dyne2meter	Owned by:	michaelld (Michael Dickens)
Priority:	Normal	Milestone:
Component:	ports	Version:	2.11.6
Keywords:	highsierra	Cc:	reneeotten (Renee Otten)
Port:	py-numpy

Description

py312-numpy (and also py313-numpy) are broken in my installation. I get "Illegal instruction" and a crash when I try to import numpy. My variant is +openblas +gfortran and my system is legacy (10.13 High Sierra). I changed to a different variant, but the issue remains.

Attachments (2)

Python_2026-01-25-090425_MacPro.crash (46.7 KB) - added by dyne2meter 7 months ago.: Crash log
patch-weak-Xcode8++.diff (1.0 KB) - added by ballapete (Peter "Pete" Dyballa) 6 months ago.: Patch to fix '-Wl,-no_weak_imports'

Download all attachments as: .zip

Change History (15)

comment:1 Changed 7 months ago by ryandesign (Ryan Carsten Schmidt)

Cc:	reneeotten added
Keywords:	highsierra added; numpy removed
Milestone:	MacPorts 2.12.0
Owner:	set to michaelld
Status:	new → assigned

Can you attach the crash log? It should be in ~/Library/Logs/DiagnosticReports

Changed 7 months ago by dyne2meter

Attachment:	Python_2026-01-25-090425_MacPro.crash added

Crash log

comment:2 Changed 7 months ago by reneeotten (Renee Otten)

I see mentions of the Accelerate framework, I don’t think that should be the case if you select the openblas variant… Did you install from source or got a binary from the buildbots? I am not behind a computer but think that on 10.13 is where in the Portfile there is code regarding which BLAS/LAPACK framework to use. If you didn’t build from source, could you please try that and see if the problem persists (also what are the default variants when you do port info py312-numpy on your machine)?

I’ll take a look once I am behind a computer.

comment:3 Changed 7 months ago by reneeotten (Renee Otten)

sorry, I see now you’re on 10.13; the Accelerate framework should only ever be used on macOS 13 and above.

comment:4 Changed 7 months ago by dyne2meter

This does not work. (Built from source with port -s install...)

Process:               Python [75116]
Path:                  /opt/local/Library/Frameworks/Python.framework/Versions/3.12/Resources/Python.app/Contents/MacOS/Python
Identifier:            Python
Version:               3.12.12 (3.12.12)
Code Type:             X86-64 (Native)
Parent Process:        tcsh [75112]
Responsible:           Python [75116]
User ID:               501

Date/Time:             2026-01-26 10:59:34.343 +0100
OS Version:            Mac OS X 10.13.6 (17G14042)
Report Version:        12
Anonymous UUID:        BAE50E32-D1DD-6A80-B2E0-7EDCB6ED1DC7

Sleep/Wake UUID:       0009A084-DCE8-4B38-BFAE-D1D8645E7E25

Time Awake Since Boot: 15000000 seconds
Time Since Wake:       14000 seconds

System Integrity Protection: disabled

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_BAD_INSTRUCTION (SIGILL)
Exception Codes:       0x0000000000000001, 0x0000000000000000
Exception Note:        EXC_CORPSE_NOTIFY

Termination Signal:    Illegal instruction: 4
Termination Reason:    Namespace SIGNAL, Code 0x4
Terminating Process:   exc handler [0]

Application Specific Information:
/opt/local/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/numpy/_core/_multiarray_umath.cpython-312-darwin.so

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   _multiarray_umath.cpython-312-darwin.so	0x0000000107e8b9fd std::__1::pair<std::__1::__hash_iterator<std::__1::__hash_node<std::__1::__hash_value_type<int, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> >, void*>*>, bool> std::__1::__hash_table<std::__1::__hash_value_type<int, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> >, std::__1::__unordered_map_hasher<int, std::__1::__hash_value_type<int, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> >, std::__1::hash<int>, std::__1::equal_to<int>, true>, std::__1::__unordered_map_equal<int, std::__1::__hash_value_type<int, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> >, std::__1::equal_to<int>, std::__1::hash<int>, true>, std::__1::allocator<std::__1::__hash_value_type<int, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> > > >::__emplace_unique_key_args<int, std::__1::pair<int const, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> > const&>(int const&, std::__1::pair<int const, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> > const&&&) + 33
1   _multiarray_umath.cpython-312-darwin.so	0x0000000107e8b9b3 std::__1::unordered_map<int, std::__1::function<_object* (tagPyArrayObject*, unsigned char)>, std::__1::hash<int>, std::__1::equal_to<int>, std::__1::allocator<std::__1::pair<int const, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> > > >::unordered_map(std::initializer_list<std::__1::pair<int const, std::__1::function<_object* (tagPyArrayObject*, unsigned char)> > >) + 59
2   _multiarray_umath.cpython-312-darwin.so	0x0000000107e8c740 _GLOBAL__sub_I_unique.cpp + 888
3   dyld                          	0x000000010f9dfac6 ImageLoaderMachO::doModInitFunctions(ImageLoader::LinkContext const&) + 420
4   dyld                          	0x000000010f9dfcf6 ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) + 40
5   dyld                          	0x000000010f9db218 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const*, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 330
6   dyld                          	0x000000010f9da34e ImageLoader::processInitializers(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 134
7   dyld                          	0x000000010f9da3e2 ImageLoader::runInitializers(ImageLoader::LinkContext const&, ImageLoader::InitializerTimingList&) + 74
8   dyld                          	0x000000010f9ce3e5 dyld::runInitializers(ImageLoader*) + 82
9   dyld                          	0x000000010f9d70a8 dlopen + 527
10  libdyld.dylib                 	0x00007fff68264d86 dlopen + 86
11  org.python.python             	0x00000001071f1a37 _PyImport_FindSharedFuncptr + 139
12  org.python.python             	0x000000010719f977 _PyImport_LoadDynamicModuleWithSpec + 660
13  org.python.python             	0x000000010719ee9f _imp_create_dynamic + 268
14  org.python.python             	0x0000000107064326 cfunction_vectorcall_FASTCALL.llvm.5D53419B + 106
15  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
16  org.python.python             	0x00000001070041c3 object_vacall + 303
17  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
18  org.python.python             	0x000000010719b7bf PyImport_ImportModuleLevelObject + 1234
19  org.python.python             	0x000000010712766e builtin___import__ + 211
20  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
21  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
22  org.python.python             	0x00000001070041c3 object_vacall + 303
23  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
24  org.python.python             	0x000000010719b5ca PyImport_ImportModuleLevelObject + 733
25  org.python.python             	0x0000000107137a09 _PyEval_EvalFrameDefault + 40343
26  org.python.python             	0x000000010712da8f PyEval_EvalCode + 300
27  org.python.python             	0x0000000107128e69 builtin_exec + 548
28  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
29  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
30  org.python.python             	0x00000001070041c3 object_vacall + 303
31  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
32  org.python.python             	0x000000010719b7bf PyImport_ImportModuleLevelObject + 1234
33  org.python.python             	0x000000010712766e builtin___import__ + 211
34  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
35  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
36  org.python.python             	0x00000001070041c3 object_vacall + 303
37  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
38  org.python.python             	0x000000010719b5ca PyImport_ImportModuleLevelObject + 733
39  org.python.python             	0x0000000107137a09 _PyEval_EvalFrameDefault + 40343
40  org.python.python             	0x000000010712da8f PyEval_EvalCode + 300
41  org.python.python             	0x0000000107128e69 builtin_exec + 548
42  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
43  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
44  org.python.python             	0x00000001070041c3 object_vacall + 303
45  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
46  org.python.python             	0x000000010719b7bf PyImport_ImportModuleLevelObject + 1234
47  org.python.python             	0x000000010712766e builtin___import__ + 211
48  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
49  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
50  org.python.python             	0x00000001070041c3 object_vacall + 303
51  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
52  org.python.python             	0x000000010719b7bf PyImport_ImportModuleLevelObject + 1234
53  org.python.python             	0x0000000107137a09 _PyEval_EvalFrameDefault + 40343
54  org.python.python             	0x000000010712da8f PyEval_EvalCode + 300
55  org.python.python             	0x0000000107128e69 builtin_exec + 548
56  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
57  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
58  org.python.python             	0x00000001070041c3 object_vacall + 303
59  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
60  org.python.python             	0x000000010719b7bf PyImport_ImportModuleLevelObject + 1234
61  org.python.python             	0x0000000107137a09 _PyEval_EvalFrameDefault + 40343
62  org.python.python             	0x000000010712da8f PyEval_EvalCode + 300
63  org.python.python             	0x0000000107128e69 builtin_exec + 548
64  org.python.python             	0x0000000107064404 cfunction_vectorcall_FASTCALL_KEYWORDS.llvm.5D53419B + 98
65  org.python.python             	0x000000010713cb1b _PyEval_EvalFrameDefault + 61097
66  org.python.python             	0x00000001070041c3 object_vacall + 303
67  org.python.python             	0x0000000107003fe3 PyObject_CallMethodObjArgs + 236
68  org.python.python             	0x000000010719b7bf PyImport_ImportModuleLevelObject + 1234
69  org.python.python             	0x0000000107137a09 _PyEval_EvalFrameDefault + 40343
70  org.python.python             	0x000000010712da8f PyEval_EvalCode + 300
71  org.python.python             	0x00000001071c87dc run_eval_code_obj.llvm.BA0689E + 83
72  org.python.python             	0x00000001071c6ddf run_mod.llvm.BA0689E + 107
73  org.python.python             	0x00000001071c57ea PyRun_InteractiveOneObjectEx + 996
74  org.python.python             	0x00000001071c4bfa _PyRun_InteractiveLoopObject + 575
75  org.python.python             	0x00000001071c4952 _PyRun_AnyFileObject + 134
76  org.python.python             	0x00000001071c5386 PyRun_AnyFileExFlags + 58
77  org.python.python             	0x00000001071f25e7 Py_RunMain + 2625
78  org.python.python             	0x00000001071f2ad0 pymain_main + 485
79  org.python.python             	0x00000001071f2c4d Py_BytesMain + 42
80  libdyld.dylib                 	0x00007fff68263015 start + 1

Thread 1:
0   libopenblas.0.dylib           	0x0000000108466b68 blas_thread_server + 216
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 2:
0   libopenblas.0.dylib           	0x0000000108466b68 blas_thread_server + 216
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 3:
0   libopenblas.0.dylib           	0x0000000108466b62 blas_thread_server + 210
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 4:
0   libopenblas.0.dylib           	0x0000000108466b68 blas_thread_server + 216
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 5:
0   libopenblas.0.dylib           	0x0000000108466b68 blas_thread_server + 216
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 6:
0   libopenblas.0.dylib           	0x0000000108466b68 blas_thread_server + 216
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 7:
0   libopenblas.0.dylib           	0x0000000108466b70 blas_thread_server + 224
1   libsystem_pthread.dylib       	0x00007fff6857b661 _pthread_body + 340
2   libsystem_pthread.dylib       	0x00007fff6857b50d _pthread_start + 377
3   libsystem_pthread.dylib       	0x00007fff6857abf9 thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x00007faa8a7019c0  rbx: 0x00000001081ac7f0  rcx: 0x00007ffee8c7b4f0  rdx: 0x00007ffee8c7b4f0
  rdi: 0x00000001081ac7f0  rsi: 0x00007ffee8c7b4f0  rbp: 0x00007ffee8c7b470  rsp: 0x00007ffee8c7b430
   r8: 0x00000000a8a701a1   r9: 0x0000000000000004  r10: 0x00000000fffffffe  r11: 0x00007faa8a700000
  r12: 0x0000000000000002  r13: 0x0000000000000005  r14: 0x0000000000000002  r15: 0x00007ffee8c7b4f0
  rip: 0x0000000107e8b9fd  rfl: 0x0000000000010202  cr2: 0x0000000108112094
  
Logical CPU:     4
Error Code:      0x00000000
Trap Number:     6


Binary Images:
       0x106f7e000 -        0x106f7ffff +org.python.python (3.12.12 - 3.12.12) <B5FF5EBB-3370-36E7-B388-454DF2252BD5> /opt/local/Library/Frameworks/Python.framework/Versions/3.12/Resources/Python.app/Contents/MacOS/Python
       0x106f83000 -        0x10736fff7 +org.python.python (3.12.12, [c] 2001-2023 Python Software Foundation. - 3.12.12) <BC8F5DDF-8588-37A3-B2F6-7A7ABA758DF1> /opt/local/Library/Frameworks/Python.framework/Versions/3.12/Python
       0x1076fe000 -        0x10770fffb +libintl.8.dylib (0) <1BA67556-5F27-3F36-936D-0334AF92FC98> /opt/local/lib/libintl.8.dylib
       0x10771a000 -        0x10781aff3 +libiconv.2.dylib (0) <6A6F7404-D117-3D83-AFB3-96D7E614BF07> /opt/local/lib/libiconv.2.dylib
       0x107b0b000 -        0x107b36fff +gnureadline.cpython-312-darwin.so (0) <2D11FC8E-83C0-32F2-8092-C1AAD352DC5E> /opt/local/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/readline/gnureadline.cpython-312-darwin.so
       0x107b51000 -        0x107b8fff7 +libncurses.6.dylib (0) <5944C6AA-53CF-314C-9C66-5CC465E151C0> /opt/local/lib/libncurses.6.dylib
       0x107cc2000 -        0x107cc2fff +_opcode.cpython-312-darwin.so (0) <21BCF9ED-CD1E-3DD5-9375-8A8A4BD8DFC2> /opt/local/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/lib-dynload/_opcode.cpython-312-darwin.so
       0x107cc5000 -        0x10817bff7 +_multiarray_umath.cpython-312-darwin.so (0) <2B55920E-F575-397B-93AD-9589657B25D3> /opt/local/Library/Frameworks/Python.framework/Versions/3.12/lib/python3.12/site-packages/numpy/_core/_multiarray_umath.cpython-312-darwin.so
       0x10823f000 -        0x108d9bfe7 +libopenblas.0.dylib (0) <057E6276-89BC-3E04-84C6-F1B44BC76136> /opt/local/lib/libopenblas.0.dylib
       0x108e44000 -        0x108f8afef +libgfortran.5.dylib (0) <F188CB70-BD1E-38C2-8625-97CEFAC83ADC> /opt/local/lib/*/libgfortran.5.dylib
       0x108fab000 -        0x108fbffff +libgcc_s.1.1.dylib (1.1) <E635BA7F-4102-39AA-B0DF-D883ED7596E5> /opt/local/lib/*/libgcc_s.1.1.dylib
       0x108fc3000 -        0x108ff6ff7 +libquadmath.0.dylib (0) <BF7DFE48-E875-3ADA-811E-9927F7007C81> /opt/local/lib/*/libquadmath.0.dylib
       0x10f9c9000 -        0x10fa13adf  dyld (551.5) <CB9BFB56-4511-36F1-A546-891FF770C01C> /usr/lib/dyld
    0x7fff3c4cb000 -     0x7fff3c4cbfff  com.apple.Accelerate (1.11 - Accelerate 1.11) <2EF00EFE-06E8-3082-85C3-2988B422A19D> /System/Library/Frameworks/Accelerate.framework/Versions/A/Accelerate
    0x7fff3c4e4000 -     0x7fff3cc32ffb  com.apple.vImage (8.1 - ???) <56C275C1-459F-37CD-BF29-2E6D81C29E53> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vImage.framework/Versions/A/vImage
    0x7fff3cc33000 -     0x7fff3cdd3ff3  libBLAS.dylib (1211.50.2) <93259222-2D94-333D-A1EB-09C6FC4A64B4> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
    0x7fff3cdd4000 -     0x7fff3ce0efef  libBNNS.dylib (38.1) <0AAE0109-71D5-3B26-8401-3E62DDF97624> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBNNS.dylib
    0x7fff3ce0f000 -     0x7fff3d1e8ff7  libLAPACK.dylib (1211.50.2) <70781D0B-AEAD-33EB-9900-10DC30F37D61> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLAPACK.dylib
    0x7fff3d1e9000 -     0x7fff3d1ffff7  libLinearAlgebra.dylib (1211.50.2) <FB5A35EA-D636-3D69-AB53-B67E1EB8134C> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libLinearAlgebra.dylib
    0x7fff3d200000 -     0x7fff3d205ff3  libQuadrature.dylib (3) <E936BDAF-8492-34D9-8C5C-AFBFCDAD8318> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libQuadrature.dylib
    0x7fff3d206000 -     0x7fff3d286fff  libSparse.dylib (79.50.2) <0DC25CDD-F8C1-3D6E-B472-8B060708424F> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparse.dylib
    0x7fff3d287000 -     0x7fff3d299ff7  libSparseBLAS.dylib (1211.50.2) <994A7D7E-FA3B-3943-A59C-8150B9AF86BE> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libSparseBLAS.dylib
    0x7fff3d29a000 -     0x7fff3d40dfe7  libvDSP.dylib (622.50.5) <4BF310F4-31A3-3DA5-80E4-7F8014AD380B> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvDSP.dylib
    0x7fff3d40e000 -     0x7fff3d4c4fef  libvMisc.dylib (622.50.5) <88143A88-4FDE-35A1-85FE-54FF0C2A9E43> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib
    0x7fff3d4c5000 -     0x7fff3d4c5fff  com.apple.Accelerate.vecLib (3.11 - vecLib 3.11) <880DEF40-389A-3F56-ACA1-B62A5BC57E59> /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/vecLib
    0x7fff3e669000 -     0x7fff3e669fff  com.apple.ApplicationServices (48 - 50) <2B5B76E7-0AB2-31F9-BE58-B963BF1EC2E8> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices
    0x7fff3e66a000 -     0x7fff3e6d0fff  com.apple.ApplicationServices.ATS (377 - 445.5) <60176327-F757-308E-B61A-D43394E87CC5> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/ATS
    0x7fff3e769000 -     0x7fff3e88bff7  libFontParser.dylib (222.1.9) <FFF2AC1A-D4D2-3AD3-BFF2-F3649ECB02AC> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/ATS.framework/Versions/A/Resources/libFontParser.dylib
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External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 1
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 682686240
    thread_create: 0
    thread_set_state: 1014

VM Region Summary:
ReadOnly portion of Libraries: Total=323.7M resident=0K(0%) swapped_out_or_unallocated=323.7M(100%)
Writable regions: Total=1.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=1.1G(100%)
 
                                VIRTUAL   REGION 
REGION TYPE                        SIZE    COUNT (non-coalesced) 
===========                     =======  ======= 
Kernel Alloc Once                    8K        2 
MALLOC                            28.6M       15 
MALLOC guard page                   32K        6 
MALLOC_LARGE (reserved)            384K        2         reserved VM address space (unallocated)
STACK GUARD                         32K        9 
Stack                             19.6M        9 
VM_ALLOCATE                       3088K        5 
VM_ALLOCATE (reserved)             1.0G        2         reserved VM address space (unallocated)
__DATA                            16.4M      193 
__FONT_DATA                          4K        2 
__LINKEDIT                       196.2M       15 
__TEXT                           127.5M      191 
__UNICODE                          560K        2 
shared memory                       12K        4 
===========                     =======  ======= 
TOTAL                              1.4G      443 
TOTAL, minus reserved VM space   392.0M      443

Last edited 7 months ago by dyne2meter (previous) (diff)

comment:5 Changed 7 months ago by reneeotten (Renee Otten)

sorry, but I don't think I'll be of any help here. Interpreting these crash-logs and figuring out what to do about it is above my pay-grade...

comment:6 Changed 7 months ago by dyne2meter

I appreciate your perspective; it's not a critical issue for me. The Sagemath 10.8 binary provided by the 3-manifolds project runs python-313 (and -312) seamlessly on my hardware, which tells me it is not a hardware issue with the processor instruction set (in my case, Xeon). I just thought somebody at macports might be interested in this. Maintaining the software for such an ancient platform is no mean feat. The macports version imports numpy and runs fine on Mojave (10.14). I use this HighSierra system because I was able to install 20 Gb of RAM in it, so I never have virtual memory issues.

comment:7 Changed 6 months ago by ballapete (Peter "Pete" Dyballa)

The solution is documented in https://github.com/numpy/numpy/issues/30844 and attached here.

Changed 6 months ago by ballapete (Peter "Pete" Dyballa)

Attachment:	patch-weak-Xcode8++.diff added

Patch to fix '-Wl,-no_weak_imports'

comment:8 Changed 6 months ago by reneeotten (Renee Otten)

Resolution:	→ fixed
Status:	assigned → closed

In ee2e8578565ef209bb4f266f0e67001540ad5721/macports-ports (master):

py-numpy: fix build on 10.6 and earlier

patch vendored meson; remove -no_weak_imports
Closes: #73424

comment:9 Changed 6 months ago by reneeotten (Renee Otten)

thanks Peter, I just committed the patch to remove this on older OSes. Thanks for bringing this upstream, and next time please add the relevant files to the ticket as well; from the meson.log the build issue was clear. With that fix applied, you are not seeing a crash anymore either?

comment:10 Changed 6 months ago by dyne2meter

What does this mean in the near term? Will there appear an updated py###-numpy with the patch? As of this post, the issue remains on my system.

comment:11 Changed 6 months ago by reneeotten (Renee Otten)

Port:	py-numpy added; py312-numpy removed
Resolution:	fixed
Status:	closed → reopened

the patch is already there, but I guess it actually doesn't fix this issue... It does fix the initial issue in 73097; I reference/closed this ticket with the commit since the patch was added here but perhaps Peter commented in the wrong ticket?

comment:12 Changed 5 months ago by dyne2meter

Does the issue have anything to do with X86_V2 baseline optimizations? That's the message I get on Catalina when I try to load py313-numpy when running python313. I tried to build from source on this installation but the installation failed. Would it help for me to upload the log from that failed build? None of the hardware I am using can handle X86_V2 -- as I understand it this optimization is used so that Apple Silicon systems can run code built for the x86_64 architecture. But my understanding could be pretty dim.

comment:13 Changed 4 months ago by dyne2meter

I solved the issue on my system by installing an older version of numpy. All releases after 2.3.5 crash on this platform, so I'm more confident that the X86_V2 baseline optimizations are what's causing it. In fact, the version of numpy in the Sage package manager that I use is 2.3.2, so I think with the next release or two from them, that won't work any more for me, unless they fiddle with the source, which they might do.

Anyway, you can close this ticket -- the resolution is "works as expected" on legacy systems -- it's my hardware, and not the OS.

Last edited 4 months ago by dyne2meter (previous) (diff)

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