Opened 3 weeks ago

Last modified 3 weeks ago

#74159 new defect

R-app @1.82_2 fails rev-upgrade check then fails to rebuild

Reported by: msrski59 Owned by:
Priority: Normal Milestone:
Component: ports Version: 2.12.5
Keywords: Sequoia Cc: kjellpk (Kjell Konis), i0ntempest
Port: R-app

Description (last modified by msrski59)

On Sequoia 15.7.7 with Xcode and Command Line Tools 26.3

After running upgrade outdated rev-upgrade flagged R-app as broken:

--->  Scanning binaries for linking errors
Could not open /opt/local/Library/Frameworks/R.framework/Versions/4.5/Resources/lib/libR.dylib: Error opening or reading file (referenced from /Applications/MacPorts/R.app/Contents/MacOS/R)
--->  Found 1 broken file, matching files to ports       
--->  Found 1 broken port, determining rebuild order
--->  Rebuilding in order
     R-app @1.82_2

The rebuild failed after SDK 'macosx15.4' could not be found and warnings were generated about unsupported headermap styles.

I cleaned R-app and ran rev-upgrade again, and the build failed again with the same issues.

I uninstalled R-app and then reinstalled it. The build failed with the same issues.

I am attaching the logs from the first build failure and the failed reinstall. They are slightly different.

Attachments (3)

main.log (13.5 KB) - added by msrski59 3 weeks ago.
log of rev-upgrade rebuild failure
main2.log (13.5 KB) - added by msrski59 3 weeks ago.
log of reinstall build failure
main_monterey.log (438.0 KB) - added by msrski59 3 weeks ago.
log of monterey build failure

Download all attachments as: .zip

Change History (10)

Changed 3 weeks ago by msrski59

Attachment: main.log added

log of rev-upgrade rebuild failure

Changed 3 weeks ago by msrski59

Attachment: main2.log added

log of reinstall build failure

comment:1 Changed 3 weeks ago by msrski59

This might relate to #73727 from March. I experienced a build failure of R-app @1.82_2, and the log referenced a missing SDK with warnings about headermap styles. After two days of cleaning and trying again, R-app mysteriously built without issue. When I reported this the ticket was properly closed. The issues seem to be too close for just a coincidence.

Last edited 3 weeks ago by msrski59 (previous) (diff)

comment:2 Changed 3 weeks ago by msrski59

When I reported the build failure in #73727, I noted that R-app built without issue on my older desktop running Monterey. That is not the case this time.

On Monterey 12.7.6 with Xcode and Command Line Tools 14.2:

Same issue as above. After running upgrade outdated today rev-upgrade flagged R-app as broken with the same message as above. rev-upgrade's attempted rebuild failed. Cleaning and re-running rev-upgrade gave the same result.

I uninstalled R-app and reinstalled. Same result -- build failure.

On Monterey the builds throw an error about an implicit declaration of function SETLEVELS being invalid. This does not appear in the Sequoia build logs, so I am attaching a Monterey build log for comparison.

Last edited 3 weeks ago by msrski59 (previous) (diff)

Changed 3 weeks ago by msrski59

Attachment: main_monterey.log added

log of monterey build failure

comment:3 Changed 3 weeks ago by msrski59

Description: modified (diff)

comment:4 Changed 3 weeks ago by msrski59

Description: modified (diff)

comment:5 Changed 3 weeks ago by i0ntempest

Upstream did not release a new source tarball for R-app that is compatible with R 4.6. Until they do that this port is effectively defunct and I recommend uninstalling it.

comment:6 Changed 3 weeks ago by i0ntempest <i0ntempest@…>

In 370ef5cf41e8d7e52069ba0d15925768db88c35c/macports-ports (master):

R-app: set known_fail until new source releases

See: #74159

comment:7 in reply to:  5 Changed 3 weeks ago by msrski59

Replying to i0ntempest:

Upstream did not release a new source tarball for R-app that is compatible with R 4.6. Until they do that this port is effectively defunct and I recommend uninstalling it.

Understood. Thanks for the info.

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