Ticket #45746: numpy.txt

~ vm$ sudo port upgrade  py27-numpy
--->  Computing dependencies for py27-numpy
--->  Fetching archive for py27-numpy
--->  Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/py27-numpy
--->  Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/py27-numpy
--->  Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-numpy
--->  Fetching distfiles for py27-numpy
--->  Attempting to fetch numpy-1.9.1.tar.gz from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/py-numpy
--->  Attempting to fetch numpy-1.9.1.tar.gz from http://nue.de.distfiles.macports.org/macports/distfiles/py-numpy
--->  Attempting to fetch numpy-1.9.1.tar.gz from http://lil.fr.distfiles.macports.org/py-numpy
--->  Attempting to fetch numpy-1.9.1.tar.gz from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/py-numpy
--->  Attempting to fetch numpy-1.9.1.tar.gz from http://her.gr.distfiles.macports.org/mirrors/macports/mpdistfiles/py-numpy
--->  Attempting to fetch numpy-1.9.1.tar.gz from https://github.com/numpy/numpy/tarball/v1.9.1
--->  Verifying checksums for py27-numpy                                             
--->  Extracting py27-numpy
--->  Applying patches to py27-numpy
--->  Configuring py27-numpy
--->  Building py27-numpy
Error: org.macports.build for port py27-numpy returned: command execution failed
Please see the log file for port py27-numpy for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log
Error: Unable to upgrade port: 1
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
~ vm$ 
~ vm$ 
~ vm$     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log
-bash: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log: Permission denied
~ vm$ cat     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log
version:1
:msg:main --->  Computing dependencies for py27-numpy:info:main .:debug:main py27-numpy has no conflicts
:debug:main Searching for dependency: python27
:debug:main Found Dependency: receipt exists for python27
:debug:main Searching for dependency: fftw-3
:debug:main Found Dependency: receipt exists for fftw-3
:debug:main Searching for dependency: py27-nose
:debug:main Found Dependency: receipt exists for py27-nose
:debug:main Searching for dependency: py27-cython
:debug:main Found Dependency: receipt exists for py27-cython
:msg:main 
:debug:main Executing org.macports.main (py27-numpy)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 20
:debug:main euid changed to: 502
:debug:archivefetch archivefetch phase started at Sun Nov  2 23:22:15 CET 2014
:msg:archivefetch --->  Fetching archive for py27-numpy
:debug:archivefetch Executing org.macports.archivefetch (py27-numpy)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 502/20
:info:archivefetch --->  py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch --->  Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/py27-numpy
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
:msg:archivefetch --->  Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/py27-numpy
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
:msg:archivefetch --->  Attempting to fetch py27-numpy-1.9.1_0.darwin_14.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-numpy
:debug:archivefetch Fetching archive failed:: The requested URL returned error: 404 Not Found
:debug:archivefetch Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Sun Nov  2 23:22:17 CET 2014
:notice:fetch --->  Fetching distfiles for py27-numpy
:debug:fetch Executing org.macports.fetch (py27-numpy)
:info:fetch --->  numpy-1.9.1.tar.gz doesn't seem to exist in /opt/local/var/macports/distfiles/py-numpy
:notice:fetch --->  Attempting to fetch numpy-1.9.1.tar.gz from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/py-numpy
:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
:notice:fetch --->  Attempting to fetch numpy-1.9.1.tar.gz from http://nue.de.distfiles.macports.org/macports/distfiles/py-numpy
:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
:notice:fetch --->  Attempting to fetch numpy-1.9.1.tar.gz from http://lil.fr.distfiles.macports.org/py-numpy
:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
:notice:fetch --->  Attempting to fetch numpy-1.9.1.tar.gz from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/py-numpy
:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
:notice:fetch --->  Attempting to fetch numpy-1.9.1.tar.gz from http://her.gr.distfiles.macports.org/mirrors/macports/mpdistfiles/py-numpy
:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
:notice:fetch --->  Attempting to fetch numpy-1.9.1.tar.gz from https://github.com/numpy/numpy/tarball/v1.9.1
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Sun Nov  2 23:22:23 CET 2014
:notice:checksum --->  Verifying checksums for py27-numpy
:debug:checksum Executing org.macports.checksum (py27-numpy)
:info:checksum --->  Checksumming numpy-1.9.1.tar.gz
:debug:checksum Calculated (rmd160) is c043ce0045166762e36c513458abc499d36bbcf5
:debug:checksum Correct (rmd160) checksum for numpy-1.9.1.tar.gz
:debug:checksum Calculated (sha256) is 504b7cbc3b47df592d683e0f3b992cfa4d29338f8d23fca07f040164018b607f
:debug:checksum Correct (sha256) checksum for numpy-1.9.1.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as root.
:debug:extract extract phase started at Sun Nov  2 23:22:24 CET 2014
:notice:extract --->  Extracting py27-numpy
:debug:extract Executing org.macports.extract (py27-numpy)
:info:extract --->  Extracting numpy-1.9.1.tar.gz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/py-numpy/numpy-1.9.1.tar.gz'
:debug:extract Environment: 
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.10'
:debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/py-numpy/numpy-1.9.1.tar.gz' | /usr/bin/tar -xf -'
:debug:extract Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/py-numpy/numpy-1.9.1.tar.gz' | /usr/bin/tar -xf - 
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work to macports
:debug:extract euid/egid changed to: 502/20
:debug:extract Executing proc-post-org.macports.extract-extract-0
:debug:extract Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Sun Nov  2 23:22:24 CET 2014
:debug:patch Executing org.macports.patch (py27-numpy)
:notice:patch --->  Applying patches to py27-numpy
:info:patch --->  Applying patch-f2py_setup.py.diff
:debug:patch Environment: 
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.10'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0'
:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy/files/patch-f2py_setup.py.diff'
:info:patch patching file numpy/f2py/setup.py
:info:patch --->  Applying patch-fcompiler_g95.diff
:debug:patch Environment: 
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.10'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0'
:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy/files/patch-fcompiler_g95.diff'
:info:patch patching file numpy/distutils/fcompiler/__init__.py
:info:patch --->  Applying patch-numpy_core_setup.py.diff
:debug:patch Environment: 
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS'
CPATH='/opt/local/include'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.10'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0'
:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-numpy/files/patch-numpy_core_setup.py.diff'
:info:patch patching file numpy/core/setup.py
:debug:patch Executing proc-post-org.macports.patch-patch-0
:info:patch --->  Patching setup.py: s|@@MPORTS_PYTHON@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7|
:debug:patch Executing reinplace: /usr/bin/sed s|@@MPORTS_PYTHON@@|/opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7| < /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/numpy/f2py/setup.py >@ file11 2>@stderr
:debug:patch euid/egid changed to: 0/0
:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/numpy/f2py/setup.py to macports
:debug:patch euid/egid changed to: 502/20
:debug:patch euid/egid changed to: 0/0
:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/numpy/f2py/setup.py
:debug:patch euid/egid changed to: 502/20
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Sun Nov  2 23:22:24 CET 2014
:notice:configure --->  Configuring py27-numpy
:debug:configure Using compiler 'Xcode Clang'
:debug:configure Executing org.macports.configure (py27-numpy)
:debug:configure Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Sun Nov  2 23:22:24 CET 2014
:notice:build --->  Building py27-numpy
:debug:build Executing proc-pre-org.macports.build-build-0
:debug:build Executing org.macports.build (py27-numpy)
:debug:build Environment: 
ARCHFLAGS='-arch x86_64'
ATLAS='None'
BLAS='/usr/lib'
CC='/usr/bin/clang'
CC_PRINT_OPTIONS='YES'
CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/.CC_PRINT_OPTIONS'
CFLAGS='-arch x86_64'
CPATH='/opt/local/include'
CXX='/usr/bin/clang++'
CXXFLAGS='-arch x86_64'
F90FLAGS='-m64'
FCFLAGS='-m64'
FFLAGS='-m64'
LAPACK='/usr/lib'
LDFLAGS='-arch x86_64'
LIBRARY_PATH='/opt/local/lib'
MACOSX_DEPLOYMENT_TARGET='10.10'
OBJC='/usr/bin/clang'
OBJCFLAGS='-arch x86_64'
:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build'
:debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build 
:info:build Running from numpy source directory.
:info:build Traceback (most recent call last):
:info:build   File "/opt/local/bin/cython", line 9, in <module>
:info:build     load_entry_point('Cython==0.21.1', 'console_scripts', 'cython')()
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 637, in setuptools_main
:info:build     return main(command_line = 1)
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 654, in main
:info:build     result = compile(sources, options)
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 629, in compile
:info:build     return compile_multiple(source, options)
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 602, in compile_multiple
:info:build     context = options.create_context()
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 527, in create_context
:info:build     self.cplus, self.language_level, options=self)
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/Main.py", line 69, in __init__
:info:build     from . import Builtin, CythonScope
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/CythonScope.py", line 5, in <module>
:info:build     from .UtilityCode import CythonUtilityCode
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/UtilityCode.py", line 3, in <module>
:info:build     from .TreeFragment import parse_from_strings, StringParseContext
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/TreeFragment.py", line 20, in <module>
:info:build     from . import Parsing
:info:build   File "Cython/Compiler/Parsing.py", line 26, in init Cython.Compiler.Parsing (Cython/Compiler/Parsing.c:55936)
:info:build   File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/Cython/Compiler/ModuleNode.py", line 2922, in <module>
:info:build     capsule_utility_code = UtilityCode.load("Capsule")
:info:build   File "Cython/Compiler/Code.py", line 240, in Cython.Compiler.Code.UtilityCodeBase.load (Cython/Compiler/Code.c:7277)
:info:build     self.write("\n")
:info:build ValueError: More than one filename match found for utility code Capsule
:info:build Processing numpy/random/mtrand/mtrand.pyx
:info:build Traceback (most recent call last):
:info:build   File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 199, in <module>
:info:build     main()
:info:build   File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 195, in main
:info:build     find_process_files(root_dir)
:info:build   File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 187, in find_process_files
:info:build     process(cur_dir, fromfile, tofile, function, hash_db)
:info:build   File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 161, in process
:info:build     processor_function(fromfile, tofile)
:info:build   File "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1/tools/cythonize.py", line 72, in process_pyx
:info:build     raise Exception('Cython failed')
:info:build Exception: Cython failed
:info:build Cythonizing sources
:info:build Traceback (most recent call last):
:info:build   File "setup.py", line 251, in <module>
:info:build     setup_package()
:info:build   File "setup.py", line 239, in setup_package
:info:build     generate_cython()
:info:build   File "setup.py", line 191, in generate_cython
:info:build     raise RuntimeError("Running cythonize failed!")
:info:build RuntimeError: Running cythonize failed!
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/work/numpy-1.9.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build 
:info:build Exit code: 1
:error:build org.macports.build for port py27-numpy returned: command execution failed
:debug:build Error code: CHILDSTATUS 88402 1
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"portbuild::build_main org.macports.build"
    ("eval" body line 1)
    invoked from within
"eval $procedure $targetname"
:info:build Warning: targets not executed for py27-numpy: org.macports.install org.macports.build org.macports.destroot
:notice:build Please see the log file for port py27-numpy for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-numpy/py27-numpy/main.log