Ticket #17470 (closed defect: fixed)
py25-biopython should depend on py25-hashlib
| Reported by: | sillyfox@… | Owned by: | mww@… |
|---|---|---|---|
| Priority: | Normal | Milestone: | |
| Component: | ports | Version: | 1.6.0 |
| Keywords: | Cc: | ||
| Port: | py25-biopython |
Description
while installing py25-biopython, i ran into the following error:
File "/private/tmp/foo.py", line 14, in <module>
from Bio.PDB.StructureBuilder import *
File "/opt/local/lib/python2.5/site-packages/Bio/PDB/__init__.py", line 31, in <module>
from Polypeptide import PPBuilder, CaPPBuilder, is_aa, standard_aa_names
File "/opt/local/lib/python2.5/site-packages/Bio/PDB/Polypeptide.py", line 11, in <module>
from Bio.SCOP.Raf import to_one_letter_code
File "/opt/local/lib/python2.5/site-packages/Bio/SCOP/__init__.py", line 47, in <module>
from Bio import SeqIO
File "/opt/local/lib/python2.5/site-packages/Bio/SeqIO/__init__.py", line 152, in <module>
import InsdcIO #EMBL and GenBank
File "/opt/local/lib/python2.5/site-packages/Bio/SeqIO/InsdcIO.py", line 7, in <module>
from Bio.GenBank.Scanner import GenBankScanner, EmblScanner
File "/opt/local/lib/python2.5/site-packages/Bio/GenBank/__init__.py", line 53, in <module>
from Bio.EUtils import DBIds, DBIdsClient
File "/opt/local/lib/python2.5/site-packages/Bio/EUtils/DBIdsClient.py", line 86, in <module>
import parse, Mixins, Config, ThinClient, Datatypes
File "/opt/local/lib/python2.5/site-packages/Bio/EUtils/ThinClient.py", line 531, in <module>
import urllib, urllib2, cStringIO
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/urllib2.py", line 91, in <module>
import hashlib
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/hashlib.py", line 133, in <module>
md5 = __get_builtin_constructor('md5')
File "/opt/local/Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/hashlib.py", line 60, in __get_builtin_constructor
import _md5
ImportError: No module named _md5
installing py25-hashlib solved the problem.
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