Fail to install Atlas on Mac Lion

[shengcer@…]

I did a clean install of Snow leopard, and then I updated to Mac lion. The procedure I was using to install macport on lion was:

sudo mkdir -p /opt/mports
cd /opt/mports
sudo svn checkout http://svn.macports.org/repository/macports/trunk

cd trunk/base
sudo ./configure --enable-readline
sudo make install
sudo make distclean

And then I was trying to use macport to install py27-numpy

sudo port install py27-numpy

everything was fine until the installation hit the failure of installing one of dependencies, atlas

--->  Computing dependencies for py27-numpy
--->  Dependencies to be installed: atlas fftw-3 py27-nose py27-distribute python27 db46 gdbm openssl zlib python_select readline sqlite3
--->  Building atlas
Error: Target org.macports.build returned: shell command failed (see log for details)
Error: Failed to install atlas
Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
Error: The following dependencies were not installed: atlas fftw-3 py27-nose py27-distribute python27 db46 gdbm openssl zlib python_select readline sqlite3
Error: Status 1 encountered during processing.

[shengcer@…]

This is the log file

[ecbrown (Eric Brown)]

Cc Me!

[Veence (Vincent)]

There are some issues related to Atlas and Lion. I’ll to have a look and fix what can be fixed, but the newest versions are difficult to compile, even on 10.6…

[shengcer@…]

I used macport to install py26-numpy on my two MBP's (snow leopard) months ago w/o a problem. So I guess this should be exclusively problematic on lion, isn't that true?

Replying to vince@…:

There are some issues related to Atlas and Lion. I’ll to have a look and fix what can be fixed, but the newest versions are difficult to compile, even on 10.6…

[shengcer@…]

Cc Me!

[nerdling (Jeremy Lavergne)]

duplicate: #30300

[Alberto.Verga@…]

Replying to shengcer@…:

I did a clean install of Snow leopard, and then I updated to Mac lion. The procedure I was using to install macport on lion was:

sudo mkdir -p /opt/mports cd /opt/mports sudo svn checkout ​http://svn.macports.org/repository/macports/trunk

cd trunk/base sudo ./configure --enable-readline sudo make install sudo make distclean

And then I was trying to use macport to install py27-numpy sudo port install py27-numpy

everything was fine until the installation hit the failure of installing one of dependencies, atlas

---> Computing dependencies for py27-numpy ---> Dependencies to be installed: atlas fftw-3 py27-nose py27-distribute python27 db46 gdbm openssl zlib python_select readline sqlite3 ---> Building atlas Error: Target org.macports.build returned: shell command failed (see log for details) Error: Failed to install atlas Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log Error: The following dependencies were not installed: atlas fftw-3 py27-nose py27-distribute python27 db46 gdbm openssl zlib python_select readline sqlite3 Error: Status 1 encountered during processing.

After installing Lion I started a clean port installation (I removed /opt/local). Then I installed gcc44 and tried:
*sudo port install atlas but it failed with:

:info:build    BEGIN STAGE 2-3-2: CacheEdge DETECTION at 17:20
:info:build make -f Makefile INSTALL_LOG/atlas_zdNKB.h pre=z 2>&1 | ./xatlas_tee INSTALL_LOG/zMMCACHEEDGE.LOG
:info:build make[1]: *** [build] Error 255
:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/atlas-3.9.37/build'
:info:build make: *** [build] Error 2

(extracted from the main.log file). I have Xcode version 4.1

1. Verga

[faisal.moledina@…]

Duplicate: #30280. See relevant zMMCACHEEDGE.log at that ticket.

[faisal.moledina@…]

Cc Me!