R-framework @2.15.1: ld fails to link a test executable in ./configure

[elijah.epifanov@…]

less /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_R-framework/R-framework/main.log

:info:configure checking for gcc... /opt/local/bin/llvm-gcc-4.2
:info:configure checking whether the C compiler works... no
:info:configure configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_R-framework/R-framework/work/R-2.15.1':
:info:configure configure: error: C compiler cannot create executables
:info:configure See `config.log' for more details
:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_R-framework/R-framework/work/R-2.15.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-R-framework --enable-R-shlib --enable-BLAS-shlib --enable-openmp --with-readline --with-aqua --with-libpng --with-ICU --with-included-gettext --without-blas --without-lapack --with-x --with-jpeglib --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib --with-cairo --with-recommended-packages --with-tcltk --with-tcl-config=/opt/local/lib/tclConfig.sh --with-tk-config=/opt/local/lib/tkConfig.sh 
:info:configure Exit code: 77
:error:configure org.macports.configure for port R-framework returned: configure failure: command execution failed
:debug:configure Error code: NONE
:debug:configure Backtrace: configure failure: command execution failed
    while executing
"$procedure $targetname"
:info:configure Warning: targets not executed for R-framework: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install
:notice:configure Please see the log file for port R-framework for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_R-framework/R-framework/main.log

[elijah.epifanov@…]

Cc Me!

[ryandesign (Ryan Carsten Schmidt)]

Please attach the config.log.

[elijah.epifanov@…]

Cc Me!

[jmroot (Joshua Root)]

configure:6092: checking whether the C compiler works
configure:6114: /opt/local/bin/llvm-gcc-4.2 -pipe -O2 -m64 -I/opt/local/include -L/opt/local/lib -L/opt/local/lib/llvm-gcc42 -lgfortran conftest.c  >&5
ld: file is universal (2 slices) but does not contain a(n) x86_64 slice: /usr/lib/crt1.10.6.o for architecture x86_64
collect2: ld returned 1 exit status
configure:6118: $? = 1
configure:6156: result: no

What does lipo -info /usr/lib/crt1.10.6.o say? I don't have 10.8, but on 10.7 I get:

Architectures in the fat file: /usr/lib/crt1.10.6.o are: x86_64 i386

and I would imagine it should have the same archs on 10.8.

[kjellpk (Kjell Konis)]

Maintainer here: I am unable to reproduce this. My only guess (i.e., jmr's comment) is that /usr/lib/crt1.10.6.o is somehow borked on the affected machine.

Also, on Mountain Lion:

$ lipo -info /usr/lib/crt1.10.6.o
Architectures in the fat file: /usr/lib/crt1.10.6.o are: i386 x86_64

[egor7@…]

I have experienced the same problem. I've done all migration steps, but my result is the same:

:info:configure checking for gcc... /opt/local/bin/llvm-gcc-4.2
:info:configure checking whether the C compiler works... no

[larryv (Lawrence Velázquez)]

Replying to egor7@…:

I have experienced the same problem. I've done all migration steps, but my result is the same:

:info:configure checking for gcc... /opt/local/bin/llvm-gcc-4.2
:info:configure checking whether the C compiler works... no

Does your config.log show the same problem as elijah.epifanov’s?

[kjellpk (Kjell Konis)]

Maintainer here: there's actually a bigger problem now. The llvm-gcc42 port no longer provides a fortran compiler. Bug #37647 has a patch making gcc45 the default compiler and removing the llvm-gcc42 variant (along with fixing a few other minor things). This bug can be closed.

[larryv (Lawrence Velázquez)]

I’ve removed +llvm_gcc42 in r103614.