Opened 4 years ago

Closed 3 years ago

#62341 closed defect (fixed)

hdf4: macOS arm64 version produces wrong results

Reported by: svniemeijer (Sander Niemeijer) Owned by: tenomoto (Takeshi Enomoto)
Priority: Normal Milestone:
Component: ports Version:
Keywords: arm64 haspatch Cc: ryandesign (Ryan Carsten Schmidt)
Port: hdf4

Description

When running the following program against any of the files from https://nsidc.org/data/NISE

#include <assert.h>
#include <stdio.h>
#include "hdf.h"
#include "mfhdf.h"

int main(int argc, char *argv[])
{
    int32 sd_id, sds_id, rank, dimsizes[H4_MAX_VAR_DIMS], data_type, num_attributes, i;
    char sds_name[H4_MAX_NC_NAME + 1];
    int result;

    sd_id = SDstart("NISE_SSMISF18_20210111.HDFEOS", DFACC_READ);
    sds_id = SDselect(sd_id, 0);
    result = SDgetinfo(sds_id, sds_name, &rank, dimsizes, &data_type, &num_attributes);
    assert(result == 0);
    for (i = 0; i < rank; i++)
    {
        printf("%d\n", dimsizes[i]);
    }
    return 0;
}

On x86_64 this gives 721 (twice). But on arm64 it gives -788398080 (twice).

The data is rank 2, 721 x 721. So the x86_64 output is correct.

It looks like the arm64 build of HDF4 is incorrectly treating the platform as big endian.

Change History (4)

comment:1 Changed 4 years ago by mf2k (Frank Schima)

In the future, please fill in the Port field and add the port maintainer(s) to Cc (port info --maintainers hdf4), if any.

comment:2 Changed 4 years ago by mf2k (Frank Schima)

Owner: set to tenomoto
Port: hdf4 added
Status: newassigned
Summary: macOS arm64 version of hdf4 produces wrong resultshdf4: macOS arm64 version produces wrong results

comment:3 in reply to:  description Changed 3 years ago by ryandesign (Ryan Carsten Schmidt)

Cc: ryandesign added
Keywords: arm64 haspatch added

Replying to svniemeijer:

When running the following program against any of the files from https://nsidc.org/data/NISE

#include <assert.h>
#include <stdio.h>
#include "hdf.h"
#include "mfhdf.h"

int main(int argc, char *argv[])
{
    int32 sd_id, sds_id, rank, dimsizes[H4_MAX_VAR_DIMS], data_type, num_attributes, i;
    char sds_name[H4_MAX_NC_NAME + 1];
    int result;

    sd_id = SDstart("NISE_SSMISF18_20210111.HDFEOS", DFACC_READ);
    sds_id = SDselect(sd_id, 0);
    result = SDgetinfo(sds_id, sds_name, &rank, dimsizes, &data_type, &num_attributes);
    assert(result == 0);
    for (i = 0; i < rank; i++)
    {
        printf("%d\n", dimsizes[i]);
    }
    return 0;
}

To compile this program, I saved it as test.c and ran:

cc -o test test.c -I/opt/local/include -L/opt/local/lib -lmfhdf -ldf

On x86_64 this gives 721 (twice).

I agree, I got the same output on macOS 10.15.7 on x86_64.

But on arm64 it gives -788398080 (twice).

I agree, I got the same output on macOS 11.6.5 on arm64.

The data is rank 2, 721 x 721. So the x86_64 output is correct.

It looks like the arm64 build of HDF4 is incorrectly treating the platform as big endian.

On both x86_64 and arm64, configure output says:

checking whether byte ordering is bigendian... no

so that seems right, but it appears that this result isn't actually used everywhere (or perhaps anywhere). Instead, many places in the code decide what to do based on CPU-specific defines, and an arm64 define is not included, resulting in the wrong decision being made.

Debian and Fedora each have different patchsets for fixing this compatibility problem with arm64 and the other systems they support.

I built my own patch focused just on adding arm64 support for macOS and it worked for me: your test program now returns the right result on arm64 and the test suite also comes much closer to passing on arm64.

https://github.com/macports/macports-ports/pull/14595

comment:4 Changed 3 years ago by ryandesign (Ryan Carsten Schmidt)

Resolution: fixed
Status: assignedclosed

In 96e97e5126e54fbddf51ca1049fe8d773f1f9f1a/macports-ports (master):

hdf4: Fix test and runtime failures on arm64

Closes: #62341

Note: See TracTickets for help on using tickets.