| 1 | # $Id: $ |
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| 2 | |
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| 3 | PortSystem 1.0 |
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| 4 | PortGroup perl5 1.0 |
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| 5 | perl5.setup eval 2.2.5 |
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| 6 | categories perl biology |
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| 7 | maintainers rpz@cse.wustl.edu |
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| 8 | description Perl module for parameter estimation with hidden Markov models. |
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| 9 | long_description iPE is parameter estimation software for generalized hidden Markov models. \ |
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| 10 | For information and documentation, see http://genes.cse.wustl.edu. |
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| 11 | |
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| 12 | homepage http://mblab.wustl.edu |
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| 13 | master_sites http://mblab.wustl.edu/software/download/ |
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| 14 | |
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| 15 | configure {} |
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| 16 | build {} |
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| 17 | test {} |
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| 18 | |
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| 19 | destroot.cmd {} |
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| 20 | destroot { |
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| 21 | set installvendorlib [perl5.extract_config installvendorlib] |
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| 22 | file mkdir ${destroot}${installvendorlib} |
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| 23 | xinstall -m 0644 -W ${worksrcpath} Eval.pm GTF.pm ${destroot}${installvendorlib} |
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| 24 | xinstall -m 0755 -W ${worksrcpath} combine_eval_reports.pl eval.pl evaluate_gtf.pl filter_badlist.pl filter_gtfs.pl get_distribution.pl get_general_stats.pl get_overlap_stats.pl gff3_to_gtf.pl graph_gtfs.pl make_intron_lenght_vs_performance_graph.pl validate_gtf.pl validate_splice_sites.pl ${destroot}${prefix}/bin |
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| 25 | } |
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| 26 | |
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| 27 | |
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| 28 | platforms darwin |
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| 29 | |
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| 30 | checksums md5 b113a04814cdc6fbf2824a5ca6e3a7c9 |
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| 31 | |
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| 32 | depends_lib-append port:p5-xml-checker port:p5-xml-libxml |
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