Ticket #22460: error.log

--->  Computing dependencies for py26-numpy
--->  Building py26-numpy
Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  libraries mkl,vml,guide not found in /opt/local/lib
  NOT AVAILABLE

atlas_blas_threads_info:
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/opt/local/lib']
    language = c
    include_dirs = ['/opt/local/include']

/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/work/numpy-1.3.0/numpy/distutils/command/config.py:361: DeprecationWarning: 
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of get_output is deprecated: please do not 
use it anymore, and avoid configuration checks 
involving running executable on the target machine.
+++++++++++++++++++++++++++++++++++++++++++++++++

  DeprecationWarning)
customize NAGFCompiler
Could not locate executable f95
customize AbsoftFCompiler
Could not locate executable f90
Could not locate executable f77
customize IBMFCompiler
Could not locate executable xlf90
Could not locate executable xlf
customize IntelFCompiler
Could not locate executable ifort
Could not locate executable ifc
customize GnuFCompiler
Could not locate executable g77
customize Gnu95FCompiler
Could not locate executable gfortran
customize G95FCompiler
Found executable /opt/local/bin/g95
customize G95FCompiler
customize G95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

compile options: '-c'
gcc-mp-4.3: _configtest.c
/opt/local/bin/gcc-mp-4.3 _configtest.o -L/opt/local/lib -lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.8.3 built by root on Tue Nov 10 13:10:34 EST 2009:
   UNAME    : Darwin taupe.ebalto.jhmi.edu 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
   INSTFLG  : -1 0 -a 1
   ARCHDEFS : -DATL_OS_OSX -DATL_ARCH_Core2 -DATL_CPUMHZ=2330 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632
   F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
   CACHEEDGE: 8388608
   F77      : /opt/local/bin/gfortran-mp-4.3, version GNU Fortran (GCC) 4.3.4
   F77FLAGS : -O -fPIC -m32
   SMC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
   SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
   SKC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
   SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/opt/local/lib']
    language = c
    define_macros = [('ATLAS_INFO', '"\\"3.8.3\\""')]
    include_dirs = ['/opt/local/include']

lapack_opt_info:
lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib
  libraries mkl,vml,guide not found in /opt/local/lib
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries lapack_atlas not found in /opt/local/lib
numpy.distutils.system_info.atlas_threads_info
Setting PTATLAS=ATLAS
Setting PTATLAS=ATLAS
  FOUND:
    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/opt/local/lib']
    language = f77
    include_dirs = ['/opt/local/include']

customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize G95FCompiler
customize G95FCompiler using config
compiling '_configtest.c':

/* This file is generated from numpy/distutils/system_info.py */
void ATL_buildinfo(void);
int main(void) {
  ATL_buildinfo();
  return 0;
}
C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

compile options: '-c'
gcc-mp-4.3: _configtest.c
/opt/local/bin/gcc-mp-4.3 _configtest.o -L/opt/local/lib -llapack -lptf77blas -lptcblas -latlas -o _configtest
ATLAS version 3.8.3 built by root on Tue Nov 10 13:10:34 EST 2009:
   UNAME    : Darwin taupe.ebalto.jhmi.edu 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
   INSTFLG  : -1 0 -a 1
   ARCHDEFS : -DATL_OS_OSX -DATL_ARCH_Core2 -DATL_CPUMHZ=2330 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632
   F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
   CACHEEDGE: 8388608
   F77      : /opt/local/bin/gfortran-mp-4.3, version GNU Fortran (GCC) 4.3.4
   F77FLAGS : -O -fPIC -m32
   SMC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
   SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
   SKC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
   SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
success!
removing: _configtest.c _configtest.o _configtest
  FOUND:
    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
    library_dirs = ['/opt/local/lib']
    language = f77
    define_macros = [('ATLAS_INFO', '"\\"3.8.3\\""')]
    include_dirs = ['/opt/local/include']

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
building py_modules sources
building library "npymath" sources
building extension "numpy.core._sort" sources
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
numpy/core/code_generators/genapi.py:9: DeprecationWarning: the md5 module is deprecated; use hashlib instead
  import md5
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.multiarray" sources
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h' to sources.
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/src/scalartypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/arraytypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h']
building extension "numpy.core.umath" sources
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h' to sources.
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/src' to include_dirs.
numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/src/scalartypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/arraytypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/umath_funcs.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/umath_loops.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core.scalarmath" sources
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
executing numpy/core/code_generators/generate_numpy_api.py
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h' to sources.
executing numpy/core/code_generators/generate_ufunc_api.py
  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h' to sources.
numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h']
building extension "numpy.core._dotblas" sources
  adding 'numpy/core/blasdot/_dotblas.c' to sources.
building extension "numpy.core.umath_tests" sources
building extension "numpy.lib._compiled_base" sources
building extension "numpy.numarray._capi" sources
building extension "numpy.fft.fftpack_lite" sources
building extension "numpy.linalg.lapack_lite" sources
  adding 'numpy/linalg/lapack_litemodule.c' to sources.
  adding 'numpy/linalg/python_xerbla.c' to sources.
building extension "numpy.random.mtrand" sources
/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/work/numpy-1.3.0/numpy/distutils/command/config.py:39: DeprecationWarning: 
+++++++++++++++++++++++++++++++++++++++++++++++++
Usage of try_run is deprecated: please do not 
use it anymore, and avoid configuration checks 
involving running executable on the target machine.
+++++++++++++++++++++++++++++++++++++++++++++++++

  DeprecationWarning)
customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize G95FCompiler
customize G95FCompiler using config
C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

compile options: '-Inumpy/core/src -Inumpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c'
gcc-mp-4.3: _configtest.c
/opt/local/bin/gcc-mp-4.3 _configtest.o -o _configtest
_configtest
failure.
removing: _configtest.c _configtest.o _configtest
building data_files sources
running build_py
copying numpy/version.py -> build/lib.macosx-10.5-i386-2.6/numpy
copying build/src.macosx-10.5-i386-2.6/numpy/__config__.py -> build/lib.macosx-10.5-i386-2.6/numpy
copying build/src.macosx-10.5-i386-2.6/numpy/distutils/__config__.py -> build/lib.macosx-10.5-i386-2.6/numpy/distutils
running build_clib
customize UnixCCompiler
customize UnixCCompiler using build_clib
running build_ext
customize UnixCCompiler
customize UnixCCompiler using build_ext
customize NAGFCompiler
customize AbsoftFCompiler
customize IBMFCompiler
customize IntelFCompiler
customize GnuFCompiler
customize Gnu95FCompiler
customize G95FCompiler
customize G95FCompiler
customize G95FCompiler using build_ext
building 'numpy.linalg.lapack_lite' extension
compiling C sources
C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes

compile options: '-DATLAS_INFO="\"3.8.3\"" -I/opt/local/include -Inumpy/core/include -Ibuild/src.macosx-10.5-i386-2.6/numpy/core/include/numpy -Inumpy/core/src -Inumpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c'
/opt/local/bin/g95 -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python build/temp.macosx-10.5-i386-2.6/numpy/linalg/lapack_litemodule.o build/temp.macosx-10.5-i386-2.6/numpy/linalg/python_xerbla.o -L/opt/local/lib -Lbuild/temp.macosx-10.5-i386-2.6 -llapack -lptf77blas -lptcblas -latlas -o build/lib.macosx-10.5-i386-2.6/numpy/linalg/lapack_lite.so
/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/liblapack.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/libptf77blas.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/libptcblas.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/libatlas.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: for architecture: (null) file: -lm is not an object file (not allowed in a library)
/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
/opt/local/bin/odlibtool: for architecture: (null) file: -lmx is not an object file (not allowed in a library)
/opt/local/bin/odlibtool: for architecture i386 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: for architecture: (null) file: -lSystem is not an object file (not allowed in a library)
/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/liblapack.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/libptf77blas.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/libptcblas.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: object: /opt/local/lib/libatlas.dylib malformed object (unknown load command 8)
/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: for architecture: (null) file: -lm is not an object file (not allowed in a library)
/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
/opt/local/bin/odlibtool: for architecture: (null) file: -lmx is not an object file (not allowed in a library)
/opt/local/bin/odlibtool: for architecture i386 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
/opt/local/bin/odlibtool: for architecture: (null) file: -lSystem is not an object file (not allowed in a library)
/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
error: Command "/opt/local/bin/g95 -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python build/temp.macosx-10.5-i386-2.6/numpy/linalg/lapack_litemodule.o build/temp.macosx-10.5-i386-2.6/numpy/linalg/python_xerbla.o -L/opt/local/lib -Lbuild/temp.macosx-10.5-i386-2.6 -llapack -lptf77blas -lptcblas -latlas -o build/lib.macosx-10.5-i386-2.6/numpy/linalg/lapack_lite.so" failed with exit status 1
Warning: the following items did not execute (for py26-numpy): org.macports.activate org.macports.build org.macports.destroot org.macports.install