| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | # $Id: Portfile 72870 2010-10-29 07:09:11Z ryandesign@macports.org $ |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | |
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| 6 | name tophat |
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| 7 | version 1.2.0 |
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| 8 | categories science biology |
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| 9 | platforms darwin |
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| 10 | maintainers gmail.com:haroldpimentel openmaintainer |
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| 11 | |
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| 12 | description a fast splice junction mapper for RNA-Seq reads |
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| 13 | |
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| 14 | long_description TopHat is ${description}. It aligns RNA-Seq reads to \ |
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| 15 | mammalian-sized genomes using the ultra high-throughput \ |
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| 16 | short read aligner Bowtie, and then analyzes the mapping \ |
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| 17 | results to identify splice junctions between exons. |
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| 18 | |
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| 19 | homepage http://tophat.cbcb.umd.edu/ |
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| 20 | master_sites ${homepage}downloads/ |
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| 21 | |
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| 22 | checksums sha1 0e697b16c64fa12180b93ecf87fdf25f722973a5 \ |
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| 23 | rmd160 da62ddc6b2bf8deeda19a95965b1ff2cfd4b95b2 |
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| 24 | |
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| 25 | use_parallel_build no |
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| 26 | |
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| 27 | depends_lib port:zlib \ |
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| 28 | port:samtools \ |
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| 29 | port:bowtie |
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| 30 | |
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| 31 | # samtools and bowtie are not universal |
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| 32 | universal_variant no |
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