Ticket #35388: Portfile.2.diff

Portfile

@@ -6 +6 @@
 name                    arb
 epoch                   1
 version                 5.3
-revision                5
+revision                6
 categories              science
-maintainers             me.com:matt.cottrell 
+maintainers             mac.com:matt.cottrell 
 platforms               darwin
 
 description             ARB graphical DNA, RNA and amino acid sequence analysis tool
@@ -34 +34 @@
                         rmd160  d4b240da693f903d0e8bd59f4b1f1043b6935508
 
 depends_build           port:imake \
-                        port:makedepend
+                        port:makedepend \
+                        port:coreutils
 
 depends_lib             port:openmotif \
                         port:lynx \
-                        port:gsed \
                         port:sablotron \
                         port:glw \
                         port:glew \
@@ -54 +54 @@
                         patch-GDEHELP-Makefile.diff
                        
 configure               {
-                        reinplace "s| sed | gsed |g" ${worksrcpath}/GDEHELP/MENUS/align.menu \
-                                                     ${worksrcpath}/util/arb_check_build_env.pl \
-                                                     ${worksrcpath}/arb_install.sh \
-                                                     ${worksrcpath}/WINDOW/AW_status.cxx \
-                                                     ${worksrcpath}/SH/example_batch_probe_match.sh \
-                                                     ${worksrcpath}/GDEHELP/GDEmenus \
-                                                     ${worksrcpath}/GDEHELP/genhelp.sh \
-                                                     ${worksrcpath}/GDEHELP/genhelptree.sh \
-                                                     ${worksrcpath}/SOURCE_TOOLS/make_java_dependencies.sh \
-                                                     ${worksrcpath}/HELP_SOURCE/Makefile \
-                                                     ${worksrcpath}/AISC_COM/AISC/Makefile \
-                                                     ${worksrcpath}/GDEHELP/Makefile \
-                                                     ${worksrcpath}/HELP_SOURCE/genhelp/Makefile \
-                                                     ${worksrcpath}/GDEHELP/Makefile.helpfiles
                         file copy ${worksrcpath}/config.makefile.template ${worksrcpath}/config.makefile
                         file copy ${filespath}/arb_macsetup ${worksrcpath}/bin
                         reinplace "s|@@LIBPERLDIR@@|[exec ${prefix}/bin/perl -e "use Config; print \$Config{archlib};"]/CORE|g" ${worksrcpath}/PERL2ARB/DARWIN.PL
@@ -83 +69 @@
 
 build.env-append        PREFIX=${prefix} \
                         ARBHOME=${worksrcpath} \
-                        PATH=${worksrcpath}/bin:$env(PATH)
+                        PATH=${worksrcpath}/bin:${prefix}/libexec/gnubin:$env(PATH)
 
 # https://trac.macports.org/ticket/33756
 if {${configure.compiler} == "clang"} {
@@ -181 +167 @@
 
 ***********************************************************
 
+If you do not have X11 installed you should install the version supplied by MacPorts:
+
+sudo port install xorg-server quartz-wm
+
+or install XQuartz (http://xquartz.macosforge.org)
+
+or install the version supplied with OS X versions previous to Mountain Lion (10.8)
+
+***********************************************************
+
 A demo data base is located at ${prefix}/share/arb/demo.arb
 
 User generated macros, arb_tcp.dat and pt_servers have been preserved,